UHGV-1940214

Genome information

Genome length 50,705 bps

CDS count 58

Completeness 75.16% (medium-quality)

geNomad score 0.9721

Prediction confidence Confident

Genome information
Genome ID	UHGV-1940214
vOTU ID	vOTU-040366
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300007853\|Ga0114093_100087\|provirus_42495_98224
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	75.16% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9721
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.64
Jumbo phage	No

Genome content
Genome length	50,705 bps
GC content	38.37%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	92.61%
Average CDS length	813.72 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1940214_2	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1940214_2	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1940214_2	UniRef90	UniRef90_A0A642B871	Serine/threonine protein kinase	NA
UHGV-1940214_2	eggNOG-mapper	484018.BACPLE_02410	RecT family	NA
UHGV-1940214_2	Pfam	PF03837	RecT family	RecT
UHGV-1940214_2	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1940214_2	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-1940214_3	eggNOG-mapper	1347393.HG726021_gene407	NA	NA
UHGV-1940214_4	PHROG	phrog_412	exonuclease VIII	DNA, RNA and nucleotide metabolism
UHGV-1940214_4	UniRef90	UniRef90_UPI0004B08063	PD-(D/E)XK nuclease-like domain-containing protein	NA
UHGV-1940214_4	eggNOG-mapper	1347393.HG726021_gene406	NA	NA
UHGV-1940214_4	Structural annotation	PF06023, MF_03030, TIGR01896, COG2887	NA	NA
UHGV-1940214_5	UniRef90	UniRef90_A0A840CR27	ElaB/YqjD/DUF883 family membrane-anchored ribosome-binding protein	NA
UHGV-1940214_5	eggNOG-mapper	484018.BACPLE_02413	NA	NA
UHGV-1940214_5	Structural annotation	PF11056	NA	NA
UHGV-1940214_7	eggNOG-mapper	484018.BACPLE_02415	NA	NA
UHGV-1940214_8	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-1940214_8	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1940214_8	UniRef90	UniRef90_A0A139KT10	Helicase protein	NA
UHGV-1940214_8	eggNOG-mapper	484018.BACPLE_02416	SNF2 family N-terminal domain	NA
UHGV-1940214_8	PADLOC	ZorD1_00003	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-1940214_8	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-1940214_8	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1940214_8	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-1940214_8	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-1940214_11	PHROG	phrog_24427	NA	unknown function
UHGV-1940214_11	eggNOG-mapper	1141663.OOC_13729	NA	NA
UHGV-1940214_13	PHROG	phrog_11227	protease	other
UHGV-1940214_13	eggNOG-mapper	411901.BACCAC_01210	NA	NA
UHGV-1940214_14	eggNOG-mapper	470145.BACCOP_01167	NA	NA
UHGV-1940214_15	PHROG	phrog_824	NA	unknown function
UHGV-1940214_15	UniRef90	UniRef90_A0A0J9FEX8	VRR-NUC domain-containing protein	NA
UHGV-1940214_15	eggNOG-mapper	484018.BACPLE_02423	VRR_NUC	NA
UHGV-1940214_15	Structural annotation	PF08774	NA	NA
UHGV-1940214_16	eggNOG-mapper	449673.BACSTE_00844	NA	NA
UHGV-1940214_17	UniRef90	UniRef90_UPI001C37A7A8	bacteriophage abortive infection AbiH family protein	NA
UHGV-1940214_17	eggNOG-mapper	999419.HMPREF1077_00265	Bacteriophage abortive infection AbiH	NA
UHGV-1940214_17	Pfam	PF14253	Bacteriophage abortive infection AbiH	AbiH
UHGV-1940214_17	Structural annotation	PF14253	NA	NA
UHGV-1940214_18	PHROG	phrog_26443	NA	unknown function
UHGV-1940214_18	UniRef90	UniRef90_UPI001931B9AF	SIR2 family protein	NA
UHGV-1940214_18	eggNOG-mapper	449673.BACSTE_00848	Bacteriophage abortive infection AbiH	NA
UHGV-1940214_18	Pfam	PF14253	Bacteriophage abortive infection AbiH	AbiH
UHGV-1940214_18	Structural annotation	MF_01968, NF001754, COG0846	NA	NA
UHGV-1940214_19	eggNOG-mapper	547042.BACCOPRO_00647	NA	NA
UHGV-1940214_20	PHROG	phrog_35356	NA	unknown function
UHGV-1940214_20	UniRef90	UniRef90_A0A6A2JRB6	Histidine kinase	NA
UHGV-1940214_20	eggNOG-mapper	411476.BACOVA_03952	NA	NA
UHGV-1940214_21	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1940214_21	PHROG	phrog_822	amidase	lysis
UHGV-1940214_21	UniRef90	UniRef90_A0A412G9U4	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1940214_21	eggNOG-mapper	1268240.ATFI01000007_gene395	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1940214_21	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1940214_21	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-1940214_21	Structural annotation	PF01510, MF_04111, NF008758, COG3023	NA	NA
UHGV-1940214_23	PHROG	phrog_15037	NA	unknown function
UHGV-1940214_23	UniRef90	UniRef90_UPI001EDCBA4D	phage holin family protein	NA
UHGV-1940214_23	eggNOG-mapper	1347393.HG726021_gene389	NA	NA
UHGV-1940214_23	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1940214_23	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1940214_25	eggNOG-mapper	484018.BACPLE_00652	NA	NA
UHGV-1940214_26	PHROG	phrog_22546	NA	unknown function
UHGV-1940214_26	eggNOG-mapper	470145.BACCOP_01120	Phage minor structural protein	NA
UHGV-1940214_26	COG	COG4926	Phage-related protein	NA
UHGV-1940214_26	Structural annotation	PF14594, PF03623, PF01441, TIGR01665, COG4379	NA	NA
UHGV-1940214_27	Structural annotation	NF012201	NA	NA
UHGV-1940214_28	UniRef90	UniRef90_A0A414WNR2	NA	NA
UHGV-1940214_28	eggNOG-mapper	411901.BACCAC_01123	NA	NA
UHGV-1940214_28	Pfam	PF14301	NA	DUF4376
UHGV-1940214_28	Structural annotation	PF14301	NA	NA
UHGV-1940214_29	UniRef90	UniRef90_UPI0019280671	NA	NA
UHGV-1940214_29	eggNOG-mapper	411901.BACCAC_01123	NA	NA
UHGV-1940214_29	Pfam	PF14301	NA	DUF4376
UHGV-1940214_29	Structural annotation	PF14301	NA	NA
UHGV-1940214_30	PHROG	phrog_17134	NA	unknown function
UHGV-1940214_30	eggNOG-mapper	1041808.G1EDU1_9CAUD	NA	NA
UHGV-1940214_31	PHROG	phrog_6305	tail protein	tail
UHGV-1940214_31	eggNOG-mapper	1235788.C802_00106	NA	NA
UHGV-1940214_31	Structural annotation	PF05709, PF20195, TIGR01633, COG4722	NA	NA
UHGV-1940214_32	PHROG	phrog_14295	NA	unknown function
UHGV-1940214_32	eggNOG-mapper	1122971.BAME01000151_gene6561	NA	NA
UHGV-1940214_32	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1940214_33	PHROG	phrog_32115	NA	unknown function
UHGV-1940214_33	UniRef90	UniRef90_A0A7J5NXU4	Phage tail tape measure protein	NA
UHGV-1940214_33	eggNOG-mapper	1347393.HG726031_gene3980	Phage-related minor tail protein	NA
UHGV-1940214_33	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1940214_33	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1940214_33	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1940214_33	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-1940214_35	eggNOG-mapper	484018.BACPLE_00657	NA	NA
UHGV-1940214_36	PHROG	phrog_6767	NA	unknown function
UHGV-1940214_36	eggNOG-mapper	484018.BACPLE_00660	NA	NA
UHGV-1940214_36	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1940214_37	PHROG	phrog_5597	NA	unknown function
UHGV-1940214_37	eggNOG-mapper	484018.BACPLE_00661	NA	NA
UHGV-1940214_37	Structural annotation	PF09646, COG3167	NA	NA
UHGV-1940214_38	PHROG	phrog_5377	NA	unknown function
UHGV-1940214_38	UniRef90	UniRef90_UPI00189E77B6	HK97 gp10 family phage protein	NA
UHGV-1940214_38	eggNOG-mapper	484018.BACPLE_00662	NA	NA
UHGV-1940214_38	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1940214_39	eggNOG-mapper	484018.BACPLE_00663	NA	NA
UHGV-1940214_39	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-1940214_40	eggNOG-mapper	484018.BACPLE_00664	NA	NA
UHGV-1940214_40	Structural annotation	PF20449	NA	NA
UHGV-1940214_41	PHROG	phrog_29	major head protein	head and packaging
UHGV-1940214_41	UniRef90	UniRef90_UPI0004AF883C	major capsid protein	NA
UHGV-1940214_41	eggNOG-mapper	1347393.HG726031_gene3972	Phage major capsid protein E	NA
UHGV-1940214_41	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-1940214_41	Structural annotation	PF03864, MF_04133, TIGR04387, COG4834	NA	NA
UHGV-1940214_42	PHROG	phrog_20501	NA	unknown function
UHGV-1940214_42	eggNOG-mapper	1347393.HG726031_gene3971	NA	NA
UHGV-1940214_43	eggNOG-mapper	484018.BACPLE_00667	NA	NA
UHGV-1940214_44	PHROG	phrog_35295	NA	unknown function
UHGV-1940214_44	UniRef90	UniRef90_A0A3A5TF03	Gln_amidase domain-containing protein	NA
UHGV-1940214_44	eggNOG-mapper	484018.BACPLE_00669	NA	NA
UHGV-1940214_45	PHROG	phrog_64	portal protein	head and packaging
UHGV-1940214_45	UniRef90	UniRef90_I9PUL9	SPP1 family phage portal protein	NA
UHGV-1940214_45	eggNOG-mapper	1347393.HG726031_gene3967	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1940214_45	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1940214_45	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1940214_47	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1940214_47	UniRef90	UniRef90_A0A416VUC6	Terminase large subunit	NA
UHGV-1940214_47	eggNOG-mapper	484018.BACPLE_00672	domain protein	NA
UHGV-1940214_47	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-1940214_47	COG	COG5410	NA	NA
UHGV-1940214_47	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-1940214_48	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-1940214_48	UniRef90	UniRef90_A0A1E9CD04	Terminase	NA
UHGV-1940214_48	eggNOG-mapper	484018.BACPLE_00673	transposase activity	NA
UHGV-1940214_48	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-1940214_48	Structural annotation	PF07141	NA	NA
UHGV-1940214_49	UniRef90	UniRef90_A0A7J5NT56	KAP NTPase domain-containing protein	NA
UHGV-1940214_49	eggNOG-mapper	679937.Bcop_1525	KAP family P-loop domain	NA
UHGV-1940214_49	Pfam	PF07693	KAP family P-loop domain	KAP_NTPase
UHGV-1940214_49	COG	COG4928	Predicted P-loop ATPase, KAP-like	NA
UHGV-1940214_49	Structural annotation	PF07693, NF041923, COG1474	NA	NA
UHGV-1940214_50	eggNOG-mapper	1121097.JCM15093_3229	NA	NA
UHGV-1940214_50	Structural annotation	PF16509, TIGR02985, COG1595	NA	NA
UHGV-1940214_51	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1940214_51	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1940214_51	UniRef90	UniRef90_A0A415M3J1	Replicative DNA helicase	NA
UHGV-1940214_51	eggNOG-mapper	1077285.AGDG01000032_gene4386	Participates in initiation and elongation during chromosome replication	NA
UHGV-1940214_51	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-1940214_51	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1940214_51	NCBIFam	TIGR00665.1	replicative DNA helicase	NA
UHGV-1940214_51	COG	COG0305	Replicative DNA helicase	NA
UHGV-1940214_51	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1940214_52	PHROG	phrog_3277	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1940214_52	UniRef90	UniRef90_A0A415M3J3	ATP-binding protein	NA
UHGV-1940214_52	eggNOG-mapper	1121097.JCM15093_3228	DNA-dependent DNA replication	NA
UHGV-1940214_52	COG	COG1484	DNA replication protein DnaC	NA
UHGV-1940214_53	PHROG	phrog_23776	NA	unknown function
UHGV-1940214_53	UniRef90	UniRef90_UPI001D0921D0	helix-turn-helix domain-containing protein	NA
UHGV-1940214_53	eggNOG-mapper	1347393.HG726021_gene366	DnaD domain protein	NA
UHGV-1940214_53	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1940214_53	Structural annotation	PF01978, MF_01819, NF040939, COG5625	NA	NA
UHGV-1940214_54	PHROG	phrog_8470	NA	unknown function
UHGV-1940214_54	UniRef90	UniRef90_UPI00189C6D95	PcfJ domain-containing protein	NA
UHGV-1940214_54	eggNOG-mapper	484018.BACPLE_00684	NA	NA
UHGV-1940214_54	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-1940214_54	Structural annotation	PF14284	NA	NA
UHGV-1940214_55	PHROG	phrog_7445	NA	unknown function
UHGV-1940214_55	UniRef90	UniRef90_UPI001E4D67EF	PcfK-like family protein	NA
UHGV-1940214_55	eggNOG-mapper	484018.BACPLE_00685	PcfK-like protein	NA
UHGV-1940214_55	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-1940214_55	Structural annotation	PF14058	NA	NA
UHGV-1940214_56	KOfam	K02338	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	NA
UHGV-1940214_56	PHROG	phrog_947	DNA polymerase processivity factor	DNA, RNA and nucleotide metabolism
UHGV-1940214_56	UniRef90	UniRef90_A0A412GH07	Beta sliding clamp	NA
UHGV-1940214_56	eggNOG-mapper	484018.BACPLE_00686	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria	NA
UHGV-1940214_56	Pfam	PF00712	DNA polymerase III beta subunit, N-terminal domain	DNA_pol3_beta
UHGV-1940214_56	Pfam	PF02767	DNA polymerase III beta subunit, central domain	DNA_pol3_beta_2
UHGV-1940214_56	Pfam	PF02768	DNA polymerase III beta subunit, C-terminal domain	DNA_pol3_beta_3
UHGV-1940214_56	NCBIFam	TIGR00663.1	DNA polymerase III subunit beta	NA
UHGV-1940214_56	COG	COG0592	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	NA
UHGV-1940214_56	Structural annotation	PF02768, PF00712, PF02767, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-1940214_57	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1940214_57	PHROG	phrog_1	integrase	integration and excision
UHGV-1940214_57	UniRef90	UniRef90_A0A5M5D4U9	Phage integrase SAM-like domain-containing protein	NA
UHGV-1940214_57	eggNOG-mapper	1235803.C825_05373	Belongs to the 'phage' integrase family	NA
UHGV-1940214_57	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-1940214_57	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-1940214_57	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1940214_57	Structural annotation	PF13102, PF17293, MF_01808, NF007246, COG4973	NA	NA
UHGV-1940214_58	UniRef90	UniRef90_A0A174LBH8	Methyltransferase	NA
UHGV-1940214_58	eggNOG-mapper	411901.BACCAC_00612	methyltransferase activity	NA
UHGV-1940214_58	COG	COG0500	SAM-dependent methyltransferase	NA