UHGV-1941993

Genome information

Genome length 36,604 bps

CDS count 61

Completeness 83.49% (medium-quality)

geNomad score 0.9554

Prediction confidence Confident

Genome information
Genome ID	UHGV-1941993
vOTU ID	vOTU-017611
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300014541\|Ga0134391_100169\|provirus_1_44467
BioSample	SAMN03922465
Country	Germany
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.49% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9554
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	66.41
Jumbo phage	No

Genome content
Genome length	36,604 bps
GC content	46.34%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	89.43%
Average CDS length	541.08 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1941993_4	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-1941993_4	PHROG	phrog_894	endolysin	lysis
UHGV-1941993_4	UniRef90	UniRef90_A0A1Q6R3X6	Peptidase_M15_3 domain-containing protein	NA
UHGV-1941993_4	eggNOG-mapper	868595.Desca_1639	Peptidase M15A	NA
UHGV-1941993_4	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-1941993_4	COG	COG3108	NA	NA
UHGV-1941993_4	Structural annotation	PF08291, NF000086, COG3108	NA	NA
UHGV-1941993_5	UniRef90	UniRef90_R6X5E0	Holin domain protein	NA
UHGV-1941993_5	eggNOG-mapper	936573.HMPREF1147_1740	Bacteriophage holin family	NA
UHGV-1941993_5	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1941993_5	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1941993_6	PHROG	phrog_2837	tail protein	tail
UHGV-1941993_6	UniRef90	UniRef90_R6WJZ0	NA	NA
UHGV-1941993_6	eggNOG-mapper	1286631.X805_38770	NA	NA
UHGV-1941993_6	Pfam	PF14301	NA	DUF4376
UHGV-1941993_6	Structural annotation	PF14301	NA	NA
UHGV-1941993_8	PHROG	phrog_13589	NA	unknown function
UHGV-1941993_8	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-1941993_9	eggNOG-mapper	428125.CLOLEP_01433	NA	NA
UHGV-1941993_10	eggNOG-mapper	910314.HMPREF9220_1078	NA	NA
UHGV-1941993_10	Structural annotation	PF16407, NF032891, COG5456	NA	NA
UHGV-1941993_12	PHROG	phrog_2427	NA	unknown function
UHGV-1941993_13	PHROG	phrog_1101	tail protein	tail
UHGV-1941993_13	UniRef90	UniRef90_R6X5E9	Phage-tail_3 domain-containing protein	NA
UHGV-1941993_13	eggNOG-mapper	592028.GCWU000321_01390	Putative phage tail protein	NA
UHGV-1941993_13	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-1941993_13	COG	COG1511	NA	NA
UHGV-1941993_13	Structural annotation	PF13550, PF02010, MF_04116, NF040662, NF040520, COG4733	NA	NA
UHGV-1941993_14	KOfam	K13695	nlpC; probable lipoprotein NlpC	NA
UHGV-1941993_14	PHROG	phrog_329	minor tail protein	tail
UHGV-1941993_14	UniRef90	UniRef90_R6XZ04	Cell wall-associated hydrolase	NA
UHGV-1941993_14	eggNOG-mapper	1041139.KB902735_gene6042	COG0791 Cell wall-associated hydrolases (invasion-associated proteins)	NA
UHGV-1941993_14	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-1941993_14	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1941993_14	Structural annotation	PF00877, TIGR02219, COG0791	NA	NA
UHGV-1941993_15	PHROG	phrog_778	tail assembly protein	tail
UHGV-1941993_15	UniRef90	UniRef90_R6WK00	NA	NA
UHGV-1941993_15	eggNOG-mapper	910314.HMPREF9220_1085	NA	NA
UHGV-1941993_15	Pfam	PF09931	NA	DUF2163
UHGV-1941993_15	COG	COG5449	NA	NA
UHGV-1941993_15	Structural annotation	PF09931, TIGR01600, COG4672	NA	NA
UHGV-1941993_16	PHROG	phrog_2913	glycoside hydrolase	other
UHGV-1941993_16	UniRef90	UniRef90_X8H6S9	PF09343 family protein	NA
UHGV-1941993_16	eggNOG-mapper	592028.GCWU000321_01387	NA	NA
UHGV-1941993_16	Pfam	PF09343	NA	DUF2460
UHGV-1941993_16	COG	COG5448	NA	NA
UHGV-1941993_16	Structural annotation	PF09343, TIGR02217, COG5448	NA	NA
UHGV-1941993_17	PHROG	phrog_12798	NA	unknown function
UHGV-1941993_17	UniRef90	UniRef90_G4Q4D2	Putative tail length tape measure protein	NA
UHGV-1941993_17	eggNOG-mapper	568816.Acin_1908	tape measure	NA
UHGV-1941993_17	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1941993_17	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1941993_17	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-1941993_18	PHROG	phrog_12798	NA	unknown function
UHGV-1941993_18	eggNOG-mapper	568816.Acin_1908	tape measure	NA
UHGV-1941993_18	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-1941993_19	eggNOG-mapper	1123288.SOV_2c03530	NA	NA
UHGV-1941993_20	eggNOG-mapper	568816.Acin_1910	NA	NA
UHGV-1941993_20	Structural annotation	PF19591	NA	NA
UHGV-1941993_21	PHROG	phrog_1407	major tail protein	tail
UHGV-1941993_21	UniRef90	UniRef90_R6X5G0	Phage major tail protein TP901-1 family	NA
UHGV-1941993_21	eggNOG-mapper	568816.Acin_1911	Phage tail tube protein	NA
UHGV-1941993_21	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-1941993_21	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-1941993_21	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-1941993_21	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1941993_22	PHROG	phrog_176	tail terminator	connector
UHGV-1941993_22	UniRef90	UniRef90_A0A7X7UA87	NA	NA
UHGV-1941993_22	eggNOG-mapper	457415.HMPREF1006_00470	NA	NA
UHGV-1941993_22	Pfam	PF11367	NA	DUF3168
UHGV-1941993_22	Structural annotation	PF16807, COG5003	NA	NA
UHGV-1941993_23	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1941993_23	UniRef90	UniRef90_G9PX80	HK97 gp10 family phage protein	NA
UHGV-1941993_23	eggNOG-mapper	568816.Acin_1913	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1941993_23	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1941993_23	COG	COG5005	NA	NA
UHGV-1941993_23	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1941993_24	PHROG	phrog_25	head closure Hc1	connector
UHGV-1941993_24	UniRef90	UniRef90_A0A1H2ZKH2	Phage head-tail adaptor, putative, SPP1 family	NA
UHGV-1941993_24	eggNOG-mapper	568816.Acin_1914	Phage head-tail joining protein	NA
UHGV-1941993_24	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1941993_24	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1941993_24	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1941993_25	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-1941993_25	UniRef90	UniRef90_UPI001C0625D6	head-tail connector protein	NA
UHGV-1941993_25	eggNOG-mapper	861450.HMPREF0080_02048	Phage gp6-like head-tail connector protein	NA
UHGV-1941993_25	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1941993_25	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1941993_25	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1941993_26	UniRef90	UniRef90_A0A2A8H876	Phage major capsid protein (Fragment)	NA
UHGV-1941993_26	eggNOG-mapper	397290.C810_00421	phage major capsid protein, HK97 family	NA
UHGV-1941993_26	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1941993_26	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1941993_26	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1941993_27	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1941993_28	KOfam	K06904	NA	NA
UHGV-1941993_28	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1941993_28	UniRef90	UniRef90_UPI00137097EC	HK97 family phage prohead protease	NA
UHGV-1941993_28	eggNOG-mapper	1235755.ANAM01000006_gene2374	Caudovirus prohead serine protease	NA
UHGV-1941993_28	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1941993_28	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1941993_28	COG	COG3740	Phage head maturation protease	NA
UHGV-1941993_28	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1941993_29	PHROG	phrog_12	portal protein	head and packaging
UHGV-1941993_29	UniRef90	UniRef90_UPI001CFCE6F1	phage portal protein	NA
UHGV-1941993_29	eggNOG-mapper	1094508.Tsac_2426	Portal protein	NA
UHGV-1941993_29	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1941993_29	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1941993_29	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1941993_30	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1941993_30	UniRef90	UniRef90_A0A174PIP2	Phage terminase-like protein, large subunit	NA
UHGV-1941993_30	eggNOG-mapper	1382358.JHVN01000024_gene1704	Phage Terminase	NA
UHGV-1941993_30	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1941993_30	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1941993_30	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1941993_30	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1941993_31	PHROG	phrog_1066	NA	unknown function
UHGV-1941993_31	eggNOG-mapper	1341151.ASZU01000004_gene265	NA	NA
UHGV-1941993_31	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-1941993_32	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1941993_32	UniRef90	UniRef90_C6CWZ5	HNH endonuclease	NA
UHGV-1941993_32	eggNOG-mapper	324057.Pjdr2_1538	HNH endonuclease	NA
UHGV-1941993_32	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1941993_32	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1941993_33	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1941993_33	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-1941993_34	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1941993_34	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1941993_34	UniRef90	UniRef90_A0A3C1IQM4	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1941993_34	eggNOG-mapper	521098.Aaci_1498	Endodeoxyribonuclease RusA	NA
UHGV-1941993_34	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1941993_34	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1941993_34	Structural annotation	PF05866, MF_00107, NF007305, COG4570	NA	NA
UHGV-1941993_35	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1941993_35	eggNOG-mapper	927704.SELR_11130	NA	NA
UHGV-1941993_35	Structural annotation	PF21578	NA	NA
UHGV-1941993_38	PHROG	phrog_1672	NA	unknown function
UHGV-1941993_41	PHROG	phrog_15609	NA	unknown function
UHGV-1941993_41	UniRef90	UniRef90_UPI0013D36094	NA	NA
UHGV-1941993_41	eggNOG-mapper	1395513.P343_08065	NA	NA
UHGV-1941993_41	Pfam	PF11300	NA	DUF3102
UHGV-1941993_41	COG	COG2433	Possible nuclease of RNase H fold, RuvC/YqgF family	NA
UHGV-1941993_41	Structural annotation	PF11300, NF033725	NA	NA
UHGV-1941993_42	PHROG	phrog_8470	NA	unknown function
UHGV-1941993_42	UniRef90	UniRef90_R5PSC3	Ribosomal_S27 domain-containing protein	NA
UHGV-1941993_42	eggNOG-mapper	649747.HMPREF0083_05326	PcfJ-like protein	NA
UHGV-1941993_42	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-1941993_42	Structural annotation	PF14284	NA	NA
UHGV-1941993_43	UniRef90	UniRef90_UPI000689CC9F	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-1941993_43	Structural annotation	PF14058	NA	NA
UHGV-1941993_46	PHROG	phrog_26484	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1941993_46	UniRef90	UniRef90_R4KDF2	PC4 domain-containing protein	NA
UHGV-1941993_46	eggNOG-mapper	86416.Clopa_3760	Transcriptional Coactivator p15 (PC4)	NA
UHGV-1941993_46	Pfam	PF02229	Transcriptional Coactivator p15 (PC4)	PC4
UHGV-1941993_46	COG	COG4443	NA	NA
UHGV-1941993_46	Structural annotation	COG4443	NA	NA
UHGV-1941993_47	UniRef90	UniRef90_R6XZA3	LysM domain protein	NA
UHGV-1941993_47	Structural annotation	MF_02014, NF010723	NA	NA
UHGV-1941993_55	Structural annotation	PF13033	NA	NA
UHGV-1941993_56	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-1941993_56	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-1941993_56	UniRef90	UniRef90_A0A848BS00	Helix-turn-helix transcriptional regulator	NA
UHGV-1941993_56	eggNOG-mapper	694431.DESACE_08910	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1941993_56	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1941993_56	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1941993_57	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1941993_57	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1941993_57	UniRef90	UniRef90_A0A848BTU6	Helix-turn-helix transcriptional regulator	NA
UHGV-1941993_57	eggNOG-mapper	888060.HMPREF9081_1959	Helix-turn-helix XRE-family like proteins	NA
UHGV-1941993_57	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1941993_57	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1941993_57	Structural annotation	PF01381, MF_00535, NF007257, COG1396	NA	NA
UHGV-1941993_58	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-1941993_58	PHROG	phrog_8036	NA	unknown function
UHGV-1941993_58	UniRef90	UniRef90_A0A3C1INR2	Damage-inducible protein D	NA
UHGV-1941993_58	eggNOG-mapper	340.xcc-b100_1250	BRO family, N-terminal domain	NA
UHGV-1941993_58	PADLOC	Specificity_I_00032	Type I specificity subunit	RM
UHGV-1941993_58	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1941993_58	COG	COG3617	Prophage antirepressor	NA
UHGV-1941993_58	Structural annotation	PF09669, NF008573, COG3617	NA	NA
UHGV-1941993_61	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1941993_61	PHROG	phrog_95	integrase	integration and excision
UHGV-1941993_61	UniRef90	UniRef90_E8LBZ4	Resolvase, N-terminal domain protein	NA
UHGV-1941993_61	eggNOG-mapper	626939.HMPREF9443_00357	overlaps another CDS with the same product name	NA
UHGV-1941993_61	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1941993_61	Pfam	PF07508	Recombinase	Recombinase
UHGV-1941993_61	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1941993_61	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1941993_61	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA