UHGV-1942794

Genome information

Genome length 35,623 bps

CDS count 54

Completeness 98.67% (high-quality)

geNomad score 0.9672

Prediction confidence Confident

Genome information
Genome ID	UHGV-1942794
vOTU ID	vOTU-011863
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300014505\|Ga0169887_10013\|provirus_35242_70864
BioSample	SAMEA2580299
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.67% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9672
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	5.54
Jumbo phage	No

Genome content
Genome length	35,623 bps
GC content	68.09%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	90.68%
Average CDS length	599.72 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1942794_1	KOfam	K14059	int; integrase	NA
UHGV-1942794_1	PHROG	phrog_1	integrase	integration and excision
UHGV-1942794_1	UniRef90	UniRef90_A0A1L7RN99	Site-specific recombinase, phage integrase	NA
UHGV-1942794_1	eggNOG-mapper	1304865.JAGF01000001_gene3999	DNA integration	NA
UHGV-1942794_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1942794_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1942794_1	Structural annotation	PF00589, PF02899, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-1942794_2	PHROG	phrog_1281	NA	unknown function
UHGV-1942794_2	UniRef90	UniRef90_UPI001884E56D	NA	NA
UHGV-1942794_2	eggNOG-mapper	1321775.HMPREF1980_00382	NA	NA
UHGV-1942794_2	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-1942794_2	COG	COG3600	NA	NA
UHGV-1942794_3	KOfam	K07341	doc; death on curing protein	NA
UHGV-1942794_3	PHROG	phrog_577	Doc-like toxin	moron, auxiliary metabolic gene and host takeover
UHGV-1942794_3	UniRef90	UniRef90_UPI001557DE65	Fic family protein	NA
UHGV-1942794_3	eggNOG-mapper	1321775.HMPREF1980_00383	NA	NA
UHGV-1942794_3	Pfam	PF02661	Fic/DOC family	Fic
UHGV-1942794_3	NCBIFam	TIGR01550.1	type II toxin-antitoxin system death-on-curing family toxin	NA
UHGV-1942794_3	COG	COG3654	Prophage maintenance system killer protein	NA
UHGV-1942794_4	UniRef90	UniRef90_UPI0010A22B84	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-1942794_4	eggNOG-mapper	525246.HMPREF0058_1211	NA	NA
UHGV-1942794_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1942794_5	UniRef90	UniRef90_A0A6N9YND0	PIN_10 domain-containing protein	NA
UHGV-1942794_5	Pfam	PF18478	PIN like domain	PIN_10
UHGV-1942794_6	PHROG	phrog_31673	NA	unknown function
UHGV-1942794_6	UniRef90	UniRef90_UPI000CA03970	NA	NA
UHGV-1942794_6	eggNOG-mapper	882083.SacmaDRAFT_5702	NA	NA
UHGV-1942794_6	Pfam	PF13411	MerR HTH family regulatory protein	MerR_1
UHGV-1942794_6	Pfam	PF04255	NA	DUF433
UHGV-1942794_6	COG	COG2442	NA	NA
UHGV-1942794_7	UniRef90	UniRef90_UPI000CA05049	helix-turn-helix transcriptional regulator	NA
UHGV-1942794_7	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-1942794_8	PHROG	phrog_4583	transcriptional repressor	transcription regulation
UHGV-1942794_8	UniRef90	UniRef90_C0W5S1	HTH cro/C1-type domain-containing protein	NA
UHGV-1942794_8	Pfam	PF08667	BetR domain	BetR
UHGV-1942794_8	COG	COG5499	Antitoxin component HigA of the HigAB toxin-antitoxin module, contains an N-terminal HTH domain	NA
UHGV-1942794_12	PHROG	phrog_8615	NA	unknown function
UHGV-1942794_12	UniRef90	UniRef90_UPI001551EB10	helix-turn-helix domain-containing protein	NA
UHGV-1942794_12	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-1942794_17	KOfam	K18955	whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator	NA
UHGV-1942794_17	PHROG	phrog_472	WhiB transcriptional factor	transcription regulation
UHGV-1942794_17	UniRef90	UniRef90_UPI001554DA78	WhiB family transcriptional regulator	NA
UHGV-1942794_17	eggNOG-mapper	1121353.H924_03355	Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA	NA
UHGV-1942794_17	Pfam	PF02467	Transcription factor WhiB	Whib
UHGV-1942794_17	HAMAP	MF_01479	Transcriptional regulator WhiB [whiB]	NA
UHGV-1942794_19	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1942794_19	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1942794_19	UniRef90	UniRef90_UPI0015570634	ParB N-terminal domain-containing protein	NA
UHGV-1942794_19	eggNOG-mapper	1115632.JAFW01000002_gene4675	Belongs to the ParB family	NA
UHGV-1942794_19	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1942794_19	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1942794_19	Structural annotation	PF02195, PF12793, MF_02015, MF_01819, TIGR00180, NF033788, COG1475, COG1959	NA	NA
UHGV-1942794_22	KOfam	K06191	nrdH; glutaredoxin-like protein NrdH	NA
UHGV-1942794_22	UniRef90	UniRef90_UPI001CC40A25	NrdH-redoxin	NA
UHGV-1942794_22	eggNOG-mapper	1690.BPSG_1426	Glutaredoxin	NA
UHGV-1942794_22	COG	COG0695	Glutaredoxin	NA
UHGV-1942794_22	Structural annotation	PF00462, MF_01132, NF007657, COG0695	NA	NA
UHGV-1942794_23	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1942794_23	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1942794_23	UniRef90	UniRef90_UPI0015533A97	single-stranded DNA-binding protein	NA
UHGV-1942794_23	eggNOG-mapper	1284679.HMPREF1626_07965	Single-stranded DNA-binding protein	NA
UHGV-1942794_23	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1942794_23	NCBIFam	NF005851.0	single-stranded DNA-binding protein	NA
UHGV-1942794_23	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1942794_23	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1942794_23	Structural annotation	PF00436, MF_00984, NF005851, COG2965	NA	NA
UHGV-1942794_25	PHROG	phrog_15463	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1942794_25	UniRef90	UniRef90_A0A1L7R8V5	HNH nucleases	NA
UHGV-1942794_25	eggNOG-mapper	1429046.RR21198_3140	endonuclease activity	NA
UHGV-1942794_25	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1942794_26	PHROG	phrog_1467	NA	unknown function
UHGV-1942794_26	eggNOG-mapper	525246.HMPREF0058_1236	NA	NA
UHGV-1942794_28	PHROG	phrog_333	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1942794_28	UniRef90	UniRef90_U1RIA4	HNH endonuclease domain protein	NA
UHGV-1942794_28	eggNOG-mapper	68570.DC74_4943	HNH nucleases	NA
UHGV-1942794_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1942794_29	PHROG	phrog_8643	DNA polymerase/primase	DNA, RNA and nucleotide metabolism
UHGV-1942794_29	UniRef90	UniRef90_UPI00165DEE12	DNA primase	NA
UHGV-1942794_29	eggNOG-mapper	1123024.AUII01000012_gene4175	Phage plasmid primase, P4 family domain protein	NA
UHGV-1942794_29	COG	COG4983	Primase-polymerase (Primpol) domain protein	NA
UHGV-1942794_29	Structural annotation	PF09250	NA	NA
UHGV-1942794_30	PHROG	phrog_226	minor tail protein	tail
UHGV-1942794_30	UniRef90	UniRef90_A0A0U1D3K1	Bacteriophage protein	NA
UHGV-1942794_30	eggNOG-mapper	1121353.H924_07235	NA	NA
UHGV-1942794_31	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1942794_31	UniRef90	UniRef90_A0A430JUG0	Terminase	NA
UHGV-1942794_31	eggNOG-mapper	591157.SSLG_02648	Terminase	NA
UHGV-1942794_31	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1942794_31	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1942794_32	PHROG	phrog_104	portal protein	head and packaging
UHGV-1942794_32	UniRef90	UniRef90_A0A8F2VUM9	Phage portal protein	NA
UHGV-1942794_32	eggNOG-mapper	36809.MAB_1786	NA	NA
UHGV-1942794_32	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1942794_32	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1942794_33	eggNOG-mapper	76636.JOEC01000001_gene1132	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1942794_34	PHROG	phrog_1522	head maturation protease	head and packaging
UHGV-1942794_34	UniRef90	UniRef90_U1S0J5	CdiA_C domain-containing protein	NA
UHGV-1942794_34	eggNOG-mapper	591157.SSLG_02646	NA	NA
UHGV-1942794_36	PHROG	phrog_2592	head scaffolding protein	head and packaging
UHGV-1942794_36	UniRef90	UniRef90_W5TNY3	Putative bacteriophage protein	NA
UHGV-1942794_36	eggNOG-mapper	1415166.NONO_c60730	NA	NA
UHGV-1942794_37	PHROG	phrog_267	major head protein	head and packaging
UHGV-1942794_37	UniRef90	UniRef90_A0A543I5J5	P22 coat protein Gp5	NA
UHGV-1942794_37	eggNOG-mapper	1381751.JAJB01000050_gene145	P22 coat protein-protein 5 domain protein	NA
UHGV-1942794_37	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-1942794_37	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1942794_39	PHROG	phrog_2377	head-tail adaptor Ad1	connector
UHGV-1942794_39	Structural annotation	TIGR02215	NA	NA
UHGV-1942794_40	PHROG	phrog_501	head closure Hc1	connector
UHGV-1942794_40	Structural annotation	PF12206, COG5614	NA	NA
UHGV-1942794_41	PHROG	phrog_16886	NA	unknown function
UHGV-1942794_41	UniRef90	UniRef90_UPI001552BA5E	HK97 gp10 family phage protein	NA
UHGV-1942794_41	Structural annotation	PF17395, COG5005	NA	NA
UHGV-1942794_42	PHROG	phrog_37847	NA	unknown function
UHGV-1942794_42	Structural annotation	PF06141, NF040576, COG3167	NA	NA
UHGV-1942794_43	PHROG	phrog_476	major tail protein	tail
UHGV-1942794_43	UniRef90	UniRef90_A0A1L7R9W6	Major tail protein	NA
UHGV-1942794_43	eggNOG-mapper	525246.HMPREF0058_1249	NA	NA
UHGV-1942794_43	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-1942794_45	PHROG	phrog_24495	NA	unknown function
UHGV-1942794_47	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-1942794_47	PHROG	phrog_971	endolysin	lysis
UHGV-1942794_47	UniRef90	UniRef90_UPI0002DB73BF	tape measure protein	NA
UHGV-1942794_47	eggNOG-mapper	1680.BADO_1579	phage tail tape measure protein	NA
UHGV-1942794_47	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1942794_47	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-1942794_47	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1942794_47	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1942794_47	Structural annotation	PF20155, NF033742, COG3941	NA	NA
UHGV-1942794_48	PHROG	phrog_30446	NA	unknown function
UHGV-1942794_49	PHROG	phrog_1887	tail protein	tail
UHGV-1942794_49	UniRef90	UniRef90_X6PXW6	Putative phage tail protein	NA
UHGV-1942794_49	eggNOG-mapper	525246.HMPREF0058_1253	NA	NA
UHGV-1942794_49	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-1942794_50	PHROG	phrog_32674	NA	unknown function
UHGV-1942794_50	Structural annotation	PF17758, MF_00075, NF003082, COG0361	NA	NA
UHGV-1942794_51	PHROG	phrog_31345	NA	unknown function
UHGV-1942794_52	UniRef90	UniRef90_C0W5W2	Carbohydrate binding domain protein	NA
UHGV-1942794_52	eggNOG-mapper	525246.HMPREF0058_1256	chitin binding	NA
UHGV-1942794_52	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-1942794_52	COG	COG3325	Chitinase, GH18 family	NA