UHGV-1943304

Genome information

Genome length 33,027 bps

CDS count 49

Completeness 83.89% (medium-quality)

geNomad score 0.9796

Prediction confidence Confident

Genome information
Genome ID	UHGV-1943304
vOTU ID	vOTU-025582
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300014516\|Ga0169883_100077\|provirus_36079_72063
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.89% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9796
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.71
Jumbo phage	No

Genome content
Genome length	33,027 bps
GC content	59.80%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	91.10%
Average CDS length	617.57 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1943304_1	KOfam	K14059	int; integrase	NA
UHGV-1943304_1	PHROG	phrog_1	integrase	integration and excision
UHGV-1943304_1	UniRef90	UniRef90_E8MTS8	Putative phage integrase	NA
UHGV-1943304_1	eggNOG-mapper	1437609.BCAL_1183	Phage integrase family	NA
UHGV-1943304_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1943304_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1943304_1	Structural annotation	PF00589, PF02899, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-1943304_2	eggNOG-mapper	1437610.BREU_1426	NA	NA
UHGV-1943304_3	UniRef90	UniRef90_A0A087CSK2	N-acetyltransferase domain-containing protein	NA
UHGV-1943304_3	eggNOG-mapper	1437610.BREU_1425	NA	NA
UHGV-1943304_3	Pfam	PF00583	Acetyltransferase (GNAT) family	Acetyltransf_1
UHGV-1943304_4	UniRef90	UniRef90_A0A080N4S8	DNA-binding HIRAN domain protein	NA
UHGV-1943304_4	eggNOG-mapper	1341695.BBOMB_1072	HIRAN domain	NA
UHGV-1943304_4	Pfam	PF08797	HIRAN domain	HIRAN
UHGV-1943304_5	PHROG	phrog_87	metallo-protease	other
UHGV-1943304_5	UniRef90	UniRef90_A0A0M0VMS4	Peptidase_M78 domain-containing protein	NA
UHGV-1943304_5	eggNOG-mapper	1437608.BBIA_2188	IrrE N-terminal-like domain	NA
UHGV-1943304_5	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1943304_5	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1943304_6	UniRef90	UniRef90_V6XWR9	HTH cro/C1-type domain-containing protein	NA
UHGV-1943304_6	eggNOG-mapper	78346.BRUM_0421	NA	NA
UHGV-1943304_6	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1943304_7	PHROG	phrog_4583	transcriptional repressor	transcription regulation
UHGV-1943304_7	UniRef90	UniRef90_B7GRZ8	HTH cro/C1-type domain-containing protein	NA
UHGV-1943304_7	eggNOG-mapper	78346.BRUM_0420	NA	NA
UHGV-1943304_7	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1943304_7	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-1943304_9	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1943304_9	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1943304_9	UniRef90	UniRef90_A0A2I1J283	Bro-N domain-containing protein	NA
UHGV-1943304_9	eggNOG-mapper	1437608.BBIA_0645	BRO family, N-terminal domain	NA
UHGV-1943304_9	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1943304_9	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1943304_9	COG	COG3617	Prophage antirepressor	NA
UHGV-1943304_9	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-1943304_10	UniRef90	UniRef90_UPI0018A0E09C	helix-turn-helix domain-containing protein	NA
UHGV-1943304_10	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-1943304_10	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-1943304_11	Structural annotation	PF01815	NA	NA
UHGV-1943304_13	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1943304_13	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1943304_13	UniRef90	UniRef90_UPI00080BF306	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1943304_13	eggNOG-mapper	158787.BSCA_0758	Endodeoxyribonuclease RusA	NA
UHGV-1943304_13	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1943304_13	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1943304_13	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1943304_14	eggNOG-mapper	158787.BSCA_0757	NA	NA
UHGV-1943304_14	Structural annotation	PF15188	NA	NA
UHGV-1943304_15	eggNOG-mapper	1437608.BBIA_1453	NA	NA
UHGV-1943304_16	eggNOG-mapper	1437609.BCAL_1729	NA	NA
UHGV-1943304_18	PHROG	phrog_1674	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1943304_18	eggNOG-mapper	158787.BSCA_0753	NA	NA
UHGV-1943304_18	Structural annotation	PF06023, MF_03030, TIGR01896, COG5377	NA	NA
UHGV-1943304_19	PHROG	phrog_1911	NA	unknown function
UHGV-1943304_19	UniRef90	UniRef90_A0A087DGQ0	NA	NA
UHGV-1943304_19	eggNOG-mapper	158787.BSCA_0752	single-stranded DNA binding	NA
UHGV-1943304_19	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1943304_19	Structural annotation	PF00196, PF17426, NF006039, COG2771	NA	NA
UHGV-1943304_21	PHROG	phrog_695	DNA polymerase/primase	DNA, RNA and nucleotide metabolism
UHGV-1943304_21	UniRef90	UniRef90_A0A4S5B218	CopY family transcriptional regulator	NA
UHGV-1943304_21	eggNOG-mapper	158787.BSCA_0751	Bifunctional DNA primase/polymerase, N-terminal	NA
UHGV-1943304_21	Pfam	PF09250	Bifunctional DNA primase/polymerase, N-terminal	Prim-Pol
UHGV-1943304_21	Pfam	PF13481	AAA domain	AAA_25
UHGV-1943304_21	Pfam	PF03965	Penicillinase repressor	Penicillinase_R
UHGV-1943304_21	COG	COG0467	RecA-superfamily ATPase, KaiC/GvpD/RAD55 family	NA
UHGV-1943304_21	Structural annotation	PF00154, PF09250, PF01475, MF_00350, MF_01177, NF006861, NF006931, COG3598	NA	NA
UHGV-1943304_22	PHROG	phrog_36075	NA	unknown function
UHGV-1943304_22	Structural annotation	PF13601, MF_01804, NF040939, COG1675	NA	NA
UHGV-1943304_23	PHROG	phrog_33887	NA	unknown function
UHGV-1943304_24	PHROG	phrog_31208	NA	unknown function
UHGV-1943304_24	eggNOG-mapper	1437608.BBIA_1862	NA	NA
UHGV-1943304_24	AcrCatalog	cluster_17067	NA	NA
UHGV-1943304_25	PHROG	phrog_22401	NA	unknown function
UHGV-1943304_25	eggNOG-mapper	1437608.BBIA_0626	NA	NA
UHGV-1943304_26	PHROG	phrog_8013	NA	unknown function
UHGV-1943304_26	eggNOG-mapper	158787.BSCA_0747	tRNA 5'-leader removal	NA
UHGV-1943304_26	COG	COG2023	Ribonuclease P protein subunit RPR2	NA
UHGV-1943304_26	Structural annotation	COG0789	NA	NA
UHGV-1943304_27	PHROG	phrog_597	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1943304_27	UniRef90	UniRef90_A0A087DI47	Gp28 phagic protein	NA
UHGV-1943304_27	eggNOG-mapper	158787.BSCA_1015	Transcriptional regulator	NA
UHGV-1943304_27	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-1943304_27	Structural annotation	PF05930, NF033499, COG3311	NA	NA
UHGV-1943304_30	PHROG	phrog_226	minor tail protein	tail
UHGV-1943304_30	UniRef90	UniRef90_A0A3G3M4U7	Terminase small subunit	NA
UHGV-1943304_30	eggNOG-mapper	1437603.BMON_0142	NA	NA
UHGV-1943304_31	PHROG	phrog_19179	terminase large subunit	head and packaging
UHGV-1943304_31	UniRef90	UniRef90_A0A087CAG9	Gp22	NA
UHGV-1943304_31	eggNOG-mapper	1437603.BMON_0141	Terminase	NA
UHGV-1943304_31	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1943304_31	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1943304_32	PHROG	phrog_104	portal protein	head and packaging
UHGV-1943304_32	UniRef90	UniRef90_A0A087DRQ5	Phage portal protein gp6-like protein	NA
UHGV-1943304_32	eggNOG-mapper	1437603.BMON_0140	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1943304_32	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1943304_32	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1943304_33	PHROG	phrog_1522	head maturation protease	head and packaging
UHGV-1943304_33	UniRef90	UniRef90_A0A8A9ICF6	CdiA_C domain-containing protein	NA
UHGV-1943304_33	eggNOG-mapper	1437603.BMON_0139	NA	NA
UHGV-1943304_34	PHROG	phrog_1793	head scaffolding protein	head and packaging
UHGV-1943304_34	UniRef90	UniRef90_UPI001115A562	NA	NA
UHGV-1943304_34	eggNOG-mapper	1437603.BMON_0138	NA	NA
UHGV-1943304_35	PHROG	phrog_212	major head protein	head and packaging
UHGV-1943304_35	UniRef90	UniRef90_UPI001038A13F	phage capsid protein	NA
UHGV-1943304_35	eggNOG-mapper	1437603.BMON_0137	NA	NA
UHGV-1943304_35	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-1943304_36	PHROG	phrog_15682	NA	unknown function
UHGV-1943304_37	UniRef90	UniRef90_I3BBX9	Head fiber domain protein	NA
UHGV-1943304_38	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-1943304_38	UniRef90	UniRef90_I3BBT3	Phage protein Gp19/Gp15/Gp42	NA
UHGV-1943304_38	eggNOG-mapper	1437603.BMON_0136	Phage protein Gp19/Gp15/Gp42	NA
UHGV-1943304_38	Pfam	PF09355	NA	Phage_Gp19
UHGV-1943304_38	Structural annotation	PF09355	NA	NA
UHGV-1943304_39	PHROG	phrog_13779	NA	unknown function
UHGV-1943304_39	UniRef90	UniRef90_UPI00192840F4	NA	NA
UHGV-1943304_39	eggNOG-mapper	1680.BADO_1238	NA	NA
UHGV-1943304_39	Pfam	PF19586	NA	DUF6093
UHGV-1943304_39	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-1943304_40	PHROG	phrog_19109	NA	unknown function
UHGV-1943304_40	eggNOG-mapper	1680.BADO_1237	NA	NA
UHGV-1943304_40	Structural annotation	TIGR01725	NA	NA
UHGV-1943304_41	UniRef90	UniRef90_A0A076JJ59	Transcriptional regulator	NA
UHGV-1943304_41	eggNOG-mapper	1680.BADO_1236	NA	NA
UHGV-1943304_41	Structural annotation	PF06141	NA	NA
UHGV-1943304_42	PHROG	phrog_2491	major tail protein	tail
UHGV-1943304_42	UniRef90	UniRef90_A0A076JPN9	Gp28	NA
UHGV-1943304_42	eggNOG-mapper	1680.BADO_1235	NA	NA
UHGV-1943304_42	Structural annotation	PF16463, TIGR02241, COG3498	NA	NA
UHGV-1943304_43	UniRef90	UniRef90_A0A076JN63	DNAase primase	NA
UHGV-1943304_43	eggNOG-mapper	1680.BADO_1234	NA	NA
UHGV-1943304_43	Structural annotation	PF08890	NA	NA
UHGV-1943304_44	UniRef90	UniRef90_A0A1X2YXV5	Terminase	NA
UHGV-1943304_45	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-1943304_45	UniRef90	UniRef90_A0A4R0U113	TP901 family phage tail tape measure protein	NA
UHGV-1943304_45	eggNOG-mapper	1680.BADO_1232	Phage-related minor tail protein	NA
UHGV-1943304_45	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1943304_45	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1943304_45	COG	COG5283	Phage-related tail protein	NA
UHGV-1943304_45	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-1943304_46	eggNOG-mapper	1680.BADO_1231	NA	NA
UHGV-1943304_46	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-1943304_47	PHROG	phrog_538	minor tail protein	tail
UHGV-1943304_47	UniRef90	UniRef90_A0A087BHI6	Phage head fiber protein	NA
UHGV-1943304_47	eggNOG-mapper	1680.BADO_1230	NA	NA
UHGV-1943304_47	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-1943304_49	PHROG	phrog_13141	NA	unknown function
UHGV-1943304_49	eggNOG-mapper	1680.BADO_1228	NA	NA
UHGV-1943304_49	Structural annotation	PF20747, PF08931	NA	NA