UHGV-1943758

Genome information

Genome length 41,298 bps

CDS count 56

Completeness 99.90% (high-quality)

geNomad score 0.9735

Prediction confidence Confident

Genome information
Genome ID	UHGV-1943758
vOTU ID	vOTU-011314
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300014533\|Ga0169889_100246\|provirus_2_41299
BioSample	SAMEA2580301
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9735
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	66.88
Jumbo phage	No

Genome content
Genome length	41,298 bps
GC content	41.59%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	91.79%
Average CDS length	679.29 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1943758_1	UniRef90	UniRef90_A0A3E2VYS2	SrtB-anchored collagen-binding adhesin	NA
UHGV-1943758_1	eggNOG-mapper	537013.CLOSTMETH_02189	NA	NA
UHGV-1943758_1	Pfam	PF17802	Prealbumin-like fold domain	SpaA
UHGV-1943758_1	COG	COG4932	Clumping factor A-related surface protein, MSCRAMM (microbial surface components recognizing adhesive matrix molecules) family, DEv-IgG fold	NA
UHGV-1943758_3	eggNOG-mapper	977880.RALTA_A0936	IrrE N-terminal-like domain	NA
UHGV-1943758_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1943758_4	UniRef90	UniRef90_A0A223MI03	Transcriptional regulator	NA
UHGV-1943758_4	eggNOG-mapper	1284686.HMPREF1630_04210	Helix-turn-helix domain	NA
UHGV-1943758_4	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-1943758_4	COG	COG1426	NA	NA
UHGV-1943758_5	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1943758_5	PHROG	phrog_2742	endolysin	lysis
UHGV-1943758_5	UniRef90	UniRef90_H1BAK9	MurNAc-LAA domain-containing protein	NA
UHGV-1943758_5	eggNOG-mapper	908340.HMPREF9406_0809	pathogenesis	NA
UHGV-1943758_5	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1943758_5	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1943758_5	Structural annotation	PF01520, PF08460, MF_00417, TIGR02883, COG0860, COG4991	NA	NA
UHGV-1943758_6	PHROG	phrog_199	holin	lysis
UHGV-1943758_6	UniRef90	UniRef90_N9WWD9	Toxin secretion/phage lysis holin	NA
UHGV-1943758_6	eggNOG-mapper	908340.HMPREF9406_2563	Bacteriophage holin family	NA
UHGV-1943758_6	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1943758_6	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1943758_6	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1943758_7	Structural annotation	NF040910	NA	NA
UHGV-1943758_8	eggNOG-mapper	908340.HMPREF9406_0812	NA	NA
UHGV-1943758_9	PHROG	phrog_38417	hyaluronidase	other
UHGV-1943758_11	PHROG	phrog_5555	tail protein	tail
UHGV-1943758_11	UniRef90	UniRef90_G1VS80	Prophage_tail domain-containing protein	NA
UHGV-1943758_11	eggNOG-mapper	999413.HMPREF1094_00205	NA	NA
UHGV-1943758_11	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1943758_11	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1943758_11	COG	COG4926	Phage-related protein	NA
UHGV-1943758_11	Structural annotation	PF06605, TIGR01665, COG4926	NA	NA
UHGV-1943758_12	UniRef90	UniRef90_UPI00085CD9AD	phage tail family protein	NA
UHGV-1943758_12	eggNOG-mapper	1280689.AUJC01000007_gene3307	phage tail	NA
UHGV-1943758_12	COG	COG4722	Phage-related protein YomH	NA
UHGV-1943758_12	Structural annotation	PF20753, PF20195, TIGR01633, COG4722	NA	NA
UHGV-1943758_13	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-1943758_13	UniRef90	UniRef90_G1VS78	TMP_3 domain-containing protein	NA
UHGV-1943758_13	eggNOG-mapper	999413.HMPREF1094_00207	nuclear chromosome segregation	NA
UHGV-1943758_13	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1943758_13	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1943758_13	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1943758_13	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-1943758_14	PHROG	phrog_706	NA	unknown function
UHGV-1943758_14	UniRef90	UniRef90_UPI001E5E5ED8	bacteriophage Gp15 family protein	NA
UHGV-1943758_14	eggNOG-mapper	999413.HMPREF1094_00208	Bacteriophage Gp15 protein	NA
UHGV-1943758_14	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1943758_14	Structural annotation	PF06854	NA	NA
UHGV-1943758_15	Structural annotation	PF10666	NA	NA
UHGV-1943758_16	PHROG	phrog_3099	NA	unknown function
UHGV-1943758_16	eggNOG-mapper	1321782.HMPREF1986_02273	NA	NA
UHGV-1943758_17	UniRef90	UniRef90_UPI001430E854	ABC transporter permease	NA
UHGV-1943758_17	Structural annotation	PF16807	NA	NA
UHGV-1943758_18	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1943758_18	UniRef90	UniRef90_UPI001BA7D0C3	minor capsid protein	NA
UHGV-1943758_18	eggNOG-mapper	999413.HMPREF1094_00212	Minor capsid protein	NA
UHGV-1943758_18	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1943758_18	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-1943758_19	Structural annotation	PF20536	NA	NA
UHGV-1943758_20	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1943758_21	PHROG	phrog_10	major head protein	head and packaging
UHGV-1943758_21	UniRef90	UniRef90_N9VBL2	HK97 family phage major capsid protein	NA
UHGV-1943758_21	eggNOG-mapper	999413.HMPREF1094_00215	Phage capsid family	NA
UHGV-1943758_21	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1943758_21	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1943758_21	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1943758_21	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1943758_22	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1943758_22	UniRef90	UniRef90_UPI0004231449	phage scaffolding protein	NA
UHGV-1943758_22	eggNOG-mapper	999413.HMPREF1094_00216	COG NOG36366 non supervised orthologous group	NA
UHGV-1943758_23	eggNOG-mapper	999413.HMPREF1094_00217	NA	NA
UHGV-1943758_24	eggNOG-mapper	1042163.BRLA_c020990	NA	NA
UHGV-1943758_25	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1943758_25	UniRef90	UniRef90_A0A223MHV7	Minor capsid protein	NA
UHGV-1943758_25	eggNOG-mapper	999413.HMPREF1094_00219	Phage minor capsid protein 2	NA
UHGV-1943758_25	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1943758_25	COG	COG2369	NA	NA
UHGV-1943758_25	Structural annotation	PF06152	NA	NA
UHGV-1943758_26	PHROG	phrog_533	portal protein	head and packaging
UHGV-1943758_26	UniRef90	UniRef90_C0CSR5	Putative phage minor capsid protein	NA
UHGV-1943758_26	eggNOG-mapper	999413.HMPREF1094_00220	phage minor capsid protein	NA
UHGV-1943758_26	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1943758_26	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1943758_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1943758_27	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1943758_27	UniRef90	UniRef90_N9VB01	PBSX family phage terminase, large subunit	NA
UHGV-1943758_27	eggNOG-mapper	999413.HMPREF1094_00221	Phage terminase, large subunit, PBSX family	NA
UHGV-1943758_27	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1943758_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-1943758_27	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1943758_28	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-1943758_28	UniRef90	UniRef90_A0A223MIM3	Terminase	NA
UHGV-1943758_28	eggNOG-mapper	999413.HMPREF1094_00222	DNA packaging	NA
UHGV-1943758_28	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-1943758_28	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-1943758_28	COG	COG5484	NA	NA
UHGV-1943758_28	Structural annotation	NF040601, COG5484	NA	NA
UHGV-1943758_30	PHROG	phrog_5200	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1943758_30	UniRef90	UniRef90_UPI000E4A45C8	HNH endonuclease	NA
UHGV-1943758_30	eggNOG-mapper	309799.DICTH_0082	endonuclease activity	NA
UHGV-1943758_30	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1943758_31	Structural annotation	PF04545, PF01920, TIGR01636	NA	NA
UHGV-1943758_33	PHROG	phrog_17842	NA	unknown function
UHGV-1943758_34	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-1943758_34	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1943758_34	UniRef90	UniRef90_UPI001F19386E	DEAD/DEAH box helicase	NA
UHGV-1943758_34	eggNOG-mapper	552396.HMPREF0863_00284	SNF2 family N-terminal domain	NA
UHGV-1943758_34	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-1943758_34	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-1943758_34	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1943758_34	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-1943758_34	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-1943758_35	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1943758_35	UniRef90	UniRef90_A0A223MI19	VRR-NUC domain-containing protein	NA
UHGV-1943758_35	eggNOG-mapper	748727.CLJU_c36520	VRR-NUC domain-containing protein	NA
UHGV-1943758_35	Structural annotation	PF01870, MF_00130, NF002584, COG1591	NA	NA
UHGV-1943758_36	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1943758_36	UniRef90	UniRef90_UPI001F058B5D	virulence-associated E family protein	NA
UHGV-1943758_36	eggNOG-mapper	536232.CLM_2670	virulence-associated E family protein	NA
UHGV-1943758_36	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-1943758_36	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-1943758_36	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-1943758_37	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-1943758_37	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1943758_37	UniRef90	UniRef90_A0A223MI15	POLAc domain-containing protein	NA
UHGV-1943758_37	eggNOG-mapper	1408424.JHYI01000032_gene3843	DNA polymerase A domain	NA
UHGV-1943758_37	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-1943758_37	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-1943758_37	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-1943758_38	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1943758_38	UniRef90	UniRef90_A0A223MHU7	NA	NA
UHGV-1943758_38	eggNOG-mapper	1274524.BSONL12_06028	NA	NA
UHGV-1943758_38	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-1943758_38	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-1943758_39	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1943758_39	UniRef90	UniRef90_A0A223MHZ0	NA	NA
UHGV-1943758_39	eggNOG-mapper	1134413.ANNK01000054_gene2216	NA	NA
UHGV-1943758_39	Pfam	PF10926	NA	DUF2800
UHGV-1943758_39	COG	COG2887	RecB family exonuclease	NA
UHGV-1943758_39	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-1943758_46	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1943758_46	UniRef90	UniRef90_A0A223MI11	Bro-N domain-containing protein	NA
UHGV-1943758_46	eggNOG-mapper	1121342.AUCO01000004_gene621	Phage antirepressor protein	NA
UHGV-1943758_46	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1943758_46	COG	COG3617	Prophage antirepressor	NA
UHGV-1943758_46	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-1943758_48	PHROG	phrog_524	anti-repressor Ant	transcription regulation
UHGV-1943758_48	UniRef90	UniRef90_A0A1C7HSW2	P22_AR_N domain-containing protein	NA
UHGV-1943758_48	eggNOG-mapper	742735.HMPREF9467_00787	P22_AR N-terminal domain	NA
UHGV-1943758_48	Pfam	PF10547	P22_AR N-terminal domain	P22_AR_N
UHGV-1943758_48	Structural annotation	PF10547, TIGR02681, COG3617	NA	NA
UHGV-1943758_49	UniRef90	UniRef90_A0A223MHS6	Transcriptional regulator	NA
UHGV-1943758_49	eggNOG-mapper	491915.Aflv_0639	Helix-turn-helix XRE-family like proteins	NA
UHGV-1943758_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1943758_49	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1943758_49	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1943758_50	UniRef90	UniRef90_A0A223MI07	Transcriptional regulator	NA
UHGV-1943758_50	eggNOG-mapper	428127.EUBDOL_01499	NA	NA
UHGV-1943758_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1943758_50	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1943758_51	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1943758_51	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1943758_51	UniRef90	UniRef90_A0A223MHT7	Transcriptional regulator	NA
UHGV-1943758_51	eggNOG-mapper	903814.ELI_0076	Helix-turn-helix XRE-family like proteins	NA
UHGV-1943758_51	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-1943758_51	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1943758_53	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1943758_53	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1943758_53	UniRef90	UniRef90_A0A223MHW5	Phage antirepressor	NA
UHGV-1943758_53	eggNOG-mapper	1567014.A0A0A7S0G2_9VIRU	DNA binding	NA
UHGV-1943758_53	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1943758_53	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1943758_53	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-1943758_55	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-1943758_55	PHROG	phrog_38620	transcriptional regulator	transcription regulation
UHGV-1943758_55	UniRef90	UniRef90_A0A223MHR8	XRE family transcriptional regulator	NA
UHGV-1943758_55	eggNOG-mapper	649747.HMPREF0083_00501	Transcriptional regulator	NA
UHGV-1943758_55	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1943758_55	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-1943758_55	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-1943758_56	KOfam	K14059	int; integrase	NA
UHGV-1943758_56	PHROG	phrog_1	integrase	integration and excision
UHGV-1943758_56	UniRef90	UniRef90_A0A223MI02	Site-specific integrase	NA
UHGV-1943758_56	eggNOG-mapper	908340.HMPREF9406_3938	Belongs to the 'phage' integrase family	NA
UHGV-1943758_56	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1943758_56	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1943758_56	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1943758_56	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA