UHGV-1944200

Genome information

Genome length 39,635 bps

CDS count 71

Completeness 99.90% (high-quality)

geNomad score 0.9689

Prediction confidence Confident

Genome information
Genome ID	UHGV-1944200
vOTU ID	vOTU-011531
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300008640\|Ga0111422_100020\|provirus_164399_204033
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9689
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.09
Jumbo phage	No

Genome content
Genome length	39,635 bps
GC content	27.14%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	71
CDS density	89.95%
Average CDS length	504.63 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1944200_1	KOfam	K14059	int; integrase	NA
UHGV-1944200_1	PHROG	phrog_1	integrase	integration and excision
UHGV-1944200_1	UniRef90	UniRef90_A0A1Q6L7V2	Tyr recombinase domain-containing protein	NA
UHGV-1944200_1	eggNOG-mapper	697329.Rumal_2496	Belongs to the 'phage' integrase family	NA
UHGV-1944200_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1944200_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1944200_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-1944200_2	PHROG	phrog_87	metallo-protease	other
UHGV-1944200_2	UniRef90	UniRef90_R5PN39	NA	NA
UHGV-1944200_2	eggNOG-mapper	1220589.CD32_16955	Zn peptidase	NA
UHGV-1944200_2	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1944200_2	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1944200_2	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1944200_3	KOfam	K20391	plcR; HTH-type transcriptional regulator, pleiotropic regulator of extracellular virulence genes	NA
UHGV-1944200_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1944200_3	UniRef90	UniRef90_A0A8E5Y4B1	Helix-turn-helix transcriptional regulator	NA
UHGV-1944200_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1944200_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1944200_3	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1944200_4	UniRef90	UniRef90_UPI00189D0CCD	XRE family transcriptional regulator	NA
UHGV-1944200_4	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-1944200_5	PHROG	phrog_6058	NA	unknown function
UHGV-1944200_5	Structural annotation	PF12728, NF033787	NA	NA
UHGV-1944200_8	Structural annotation	PF11614, NF006325, COG2847	NA	NA
UHGV-1944200_11	PHROG	phrog_674	NA	unknown function
UHGV-1944200_11	UniRef90	UniRef90_A0A7X9AE52	NA	NA
UHGV-1944200_11	eggNOG-mapper	1408437.JNJN01000039_gene373	NA	NA
UHGV-1944200_11	Pfam	PF07083	NA	DUF1351
UHGV-1944200_11	Structural annotation	PF07083	NA	NA
UHGV-1944200_12	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1944200_12	UniRef90	UniRef90_R7FH02	Phage recombination protein Bet	NA
UHGV-1944200_12	eggNOG-mapper	1031288.AXAA01000044_gene1973	Phage recombination protein Bet	NA
UHGV-1944200_12	Pfam	PF03837	RecT family	RecT
UHGV-1944200_12	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-1944200_12	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1944200_12	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-1944200_13	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1944200_13	UniRef90	UniRef90_R5PYB3	Metallo-beta-lactamase domain protein	NA
UHGV-1944200_13	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-1944200_13	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-1944200_13	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1944200_13	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-1944200_14	UniRef90	UniRef90_UPI000C7BF263	recombination protein NinB	NA
UHGV-1944200_14	eggNOG-mapper	508419.F8J186_9CAUD	NA	NA
UHGV-1944200_15	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1944200_15	UniRef90	UniRef90_R7IWH8	HNHc domain-containing protein	NA
UHGV-1944200_15	eggNOG-mapper	445972.ANACOL_01826	HNH nucleases	NA
UHGV-1944200_15	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1944200_17	PHROG	phrog_15768	NA	unknown function
UHGV-1944200_17	UniRef90	UniRef90_UPI0015F6D855	NA	NA
UHGV-1944200_17	eggNOG-mapper	1121344.JHZO01000003_gene982	NA	NA
UHGV-1944200_17	Pfam	PF19808	NA	DUF6291
UHGV-1944200_18	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-1944200_18	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1944200_18	UniRef90	UniRef90_R6N6L5	DnaD domain protein	NA
UHGV-1944200_18	eggNOG-mapper	1567011.A0A0A7S128_9VIRU	calcium ion binding	NA
UHGV-1944200_18	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-1944200_18	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-1944200_18	Structural annotation	PF07261, TIGR01446, COG3935	NA	NA
UHGV-1944200_19	Structural annotation	PF11417	NA	NA
UHGV-1944200_20	PHROG	phrog_4973	NA	unknown function
UHGV-1944200_20	UniRef90	UniRef90_A0A843HM15	Helix-turn-helix domain-containing protein	NA
UHGV-1944200_20	eggNOG-mapper	640510.BC1001_5925	Helix-turn-helix domain	NA
UHGV-1944200_20	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-1944200_20	Structural annotation	PF14090, NF040939, COG5625	NA	NA
UHGV-1944200_22	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1944200_22	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1944200_22	UniRef90	UniRef90_R7FGZ0	Gp63	NA
UHGV-1944200_22	eggNOG-mapper	1120985.AUMI01000019_gene2247	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-1944200_22	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1944200_22	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-1944200_23	Structural annotation	PF09871, TIGR00739	NA	NA
UHGV-1944200_26	eggNOG-mapper	397290.C810_01505	NA	NA
UHGV-1944200_27	Structural annotation	COG4446	NA	NA
UHGV-1944200_42	eggNOG-mapper	1280689.AUJC01000003_gene960	NA	NA
UHGV-1944200_43	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1944200_43	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1944200_43	UniRef90	UniRef90_R6HDV5	Prophage LambdaCh01 terminase small subunit	NA
UHGV-1944200_43	eggNOG-mapper	1235800.C819_00494	Terminase small subunit	NA
UHGV-1944200_43	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1944200_43	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1944200_43	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1944200_44	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1944200_44	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1944200_44	UniRef90	UniRef90_R6H5U4	Phage terminase large subunit PBSX family	NA
UHGV-1944200_44	eggNOG-mapper	861454.HMPREF9099_00528	Phage terminase large subunit	NA
UHGV-1944200_44	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1944200_44	COG	COG1783	Phage terminase large subunit	NA
UHGV-1944200_44	Structural annotation	PF04466, MF_04145, NF002340, COG5410	NA	NA
UHGV-1944200_45	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1944200_45	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-1944200_45	UniRef90	UniRef90_R6HF73	Phage terminase large subunit PBSX family	NA
UHGV-1944200_45	eggNOG-mapper	1408823.AXUS01000024_gene2712	Phage terminase, large subunit, PBSX family	NA
UHGV-1944200_45	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1944200_45	COG	COG1783	Phage terminase large subunit	NA
UHGV-1944200_45	Structural annotation	PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1944200_46	PHROG	phrog_64	portal protein	head and packaging
UHGV-1944200_46	UniRef90	UniRef90_R6I230	SPP1 family phage portal protein	NA
UHGV-1944200_46	eggNOG-mapper	665956.HMPREF1032_03614	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1944200_46	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1944200_46	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-1944200_49	eggNOG-mapper	1507.HMPREF0262_01176	Phage minor capsid protein 2	NA
UHGV-1944200_49	COG	COG2369	NA	NA
UHGV-1944200_49	Structural annotation	TIGR01641	NA	NA
UHGV-1944200_53	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-1944200_53	UniRef90	UniRef90_R6HDW5	Phage scaffold protein	NA
UHGV-1944200_53	Pfam	PF14265	NA	DUF4355
UHGV-1944200_53	Structural annotation	PF14265	NA	NA
UHGV-1944200_54	PHROG	phrog_422	major head protein	head and packaging
UHGV-1944200_54	eggNOG-mapper	1123263.AUKY01000051_gene1080	NA	NA
UHGV-1944200_54	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-1944200_55	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1944200_56	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1944200_57	Structural annotation	TIGR01725	NA	NA
UHGV-1944200_58	eggNOG-mapper	665956.HMPREF1032_03624	NA	NA
UHGV-1944200_58	Structural annotation	PF05657	NA	NA
UHGV-1944200_59	eggNOG-mapper	665956.HMPREF1032_03625	NA	NA
UHGV-1944200_60	Structural annotation	PF12363	NA	NA
UHGV-1944200_62	PHROG	phrog_11491	NA	unknown function
UHGV-1944200_62	UniRef90	UniRef90_R6U6A5	Prophage pi3 protein 59	NA
UHGV-1944200_62	eggNOG-mapper	1410674.JNKU01000056_gene1899	NA	NA
UHGV-1944200_62	Structural annotation	PF11355, PF13828, MF_00791, TIGR02588, COG5633	NA	NA
UHGV-1944200_63	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-1944200_63	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1944200_63	UniRef90	UniRef90_R6H5W8	Phage-related protein-like protein	NA
UHGV-1944200_63	eggNOG-mapper	1449050.JNLE01000003_gene3881	domain protein	NA
UHGV-1944200_63	COG	COG1511	NA	NA
UHGV-1944200_63	Structural annotation	PF09486, NF038178, COG1382	NA	NA
UHGV-1944200_64	PHROG	phrog_1194	NA	unknown function
UHGV-1944200_64	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-1944200_65	PHROG	phrog_6616	tail protein	tail
UHGV-1944200_65	eggNOG-mapper	1414720.CBYM010000002_gene560	Phage minor structural protein	NA
UHGV-1944200_65	COG	COG4926	Phage-related protein	NA
UHGV-1944200_65	Structural annotation	PF01105, PF04862, NF033848, TIGR04362	NA	NA
UHGV-1944200_66	PHROG	phrog_372	tail protein	tail
UHGV-1944200_66	UniRef90	UniRef90_E9RT77	Fibronectin type-III domain-containing protein	NA
UHGV-1944200_66	eggNOG-mapper	442493.A8E284_BPPHE	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-1944200_66	Pfam	PF05895	NA	DUF859
UHGV-1944200_66	Structural annotation	PF05895, MF_04116, NF010681, COG3401	NA	NA
UHGV-1944200_67	Structural annotation	PF07041	NA	NA
UHGV-1944200_68	eggNOG-mapper	397290.C810_03256	NA	NA
UHGV-1944200_69	Structural annotation	PF16938	NA	NA
UHGV-1944200_70	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1944200_70	PHROG	phrog_9611	endolysin	lysis
UHGV-1944200_70	UniRef90	UniRef90_R6H5X6	N-acetylmuramyl-L-alanine amidase negative regulator of AmpC AmpD	NA
UHGV-1944200_70	eggNOG-mapper	642492.Clole_0841	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-1944200_70	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1944200_70	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1944200_70	Structural annotation	PF01510, PF20780, MF_04111, NF008758, COG5632	NA	NA
UHGV-1944200_71	UniRef90	UniRef90_R6I264	HTH cro/C1-type domain-containing protein	NA
UHGV-1944200_71	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-1944200_71	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1944200_71	Structural annotation	PF01381, NF010465, COG1476	NA	NA