UHGV-1944932

Genome information

Genome length 27,515 bps

CDS count 48

Completeness 70.66% (medium-quality)

geNomad score 0.9653

Prediction confidence Confident

Genome information
Genome ID	UHGV-1944932
vOTU ID	vOTU-041142
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300014539\|Ga0169882_100672
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.66% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9653
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.94
Jumbo phage	No

Genome content
Genome length	27,515 bps
GC content	46.33%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	92.34%
Average CDS length	537.38 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1944932_1	UniRef90	UniRef90_A0A1H0WI17	DNA binding domain-containing protein, excisionase family	NA
UHGV-1944932_1	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1944932_1	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-1944932_1	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-1944932_4	UniRef90	UniRef90_A0A1H0W5D6	Helix-turn-helix domain-containing protein	NA
UHGV-1944932_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1944932_4	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-1944932_4	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1944932_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1944932_5	UniRef90	UniRef90_A0A1H0W5S2	Helix-turn-helix domain-containing protein	NA
UHGV-1944932_5	eggNOG-mapper	397290.C810_01482	Helix-turn-helix XRE-family like proteins	NA
UHGV-1944932_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1944932_5	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1944932_5	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-1944932_7	PHROG	phrog_7940	NA	unknown function
UHGV-1944932_7	UniRef90	UniRef90_A0A1H0W5C8	BRO family, N-terminal domain	NA
UHGV-1944932_7	eggNOG-mapper	546271.Selsp_1341	BRO family, N-terminal domain	NA
UHGV-1944932_7	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1944932_7	COG	COG3617	Prophage antirepressor	NA
UHGV-1944932_7	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-1944932_13	UniRef90	UniRef90_A0A1H0WBV9	Helix-turn-helix domain-containing protein	NA
UHGV-1944932_13	eggNOG-mapper	742765.HMPREF9457_03440	Helix-turn-helix XRE-family like proteins	NA
UHGV-1944932_13	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1944932_13	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1944932_13	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1944932_14	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1944932_14	UniRef90	UniRef90_A0A1H0WAW2	Helix-turn-helix domain-containing protein	NA
UHGV-1944932_14	eggNOG-mapper	1235793.C809_01899	Helix-turn-helix XRE-family like proteins	NA
UHGV-1944932_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1944932_14	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1944932_14	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-1944932_18	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1944932_18	eggNOG-mapper	887929.HMP0721_1280	NA	NA
UHGV-1944932_18	Structural annotation	PF21578	NA	NA
UHGV-1944932_20	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1944932_20	PHROG	phrog_4608	anti-repressor	transcription regulation
UHGV-1944932_20	UniRef90	UniRef90_A0A1H0WAW8	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-1944932_20	eggNOG-mapper	1122147.AUEH01000021_gene610	SOS response	NA
UHGV-1944932_20	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-1944932_20	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1944932_20	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-1944932_20	Structural annotation	PF03374, PF10543, TIGR02681, COG3645	NA	NA
UHGV-1944932_23	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1944932_23	UniRef90	UniRef90_A0A1H0W5Y9	Holliday junction resolvase RecU	NA
UHGV-1944932_23	eggNOG-mapper	411483.FAEPRAA2165_01882	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-1944932_23	Pfam	PF03838	Recombination protein U	RecU
UHGV-1944932_23	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-1944932_28	PHROG	phrog_1558	NA	unknown function
UHGV-1944932_28	UniRef90	UniRef90_A0A6N2ZQR4	HTH_11 domain-containing protein	NA
UHGV-1944932_28	eggNOG-mapper	1235802.C823_01038	NA	NA
UHGV-1944932_28	Pfam	PF08279	HTH domain	HTH_11
UHGV-1944932_28	Structural annotation	TIGR01637, COG2739	NA	NA
UHGV-1944932_29	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-1944932_29	UniRef90	UniRef90_A0A6N2ZL57	HTH cro/C1-type domain-containing protein	NA
UHGV-1944932_29	eggNOG-mapper	1304866.K413DRAFT_0788	Helix-turn-helix XRE-family like proteins	NA
UHGV-1944932_29	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1944932_29	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1944932_30	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-1944932_30	PHROG	phrog_56	DNA methyltransferase	other
UHGV-1944932_30	UniRef90	UniRef90_A0A4P9C9V2	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-1944932_30	eggNOG-mapper	1051985.l11_17040	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-1944932_30	PADLOC	MTase_II_00054	Type II methyltransferase	RM
UHGV-1944932_30	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-1944932_30	COG	COG3392	Adenine-specific DNA methylase	NA
UHGV-1944932_32	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1944932_32	UniRef90	UniRef90_A0A1H0WDX3	HNH endonuclease	NA
UHGV-1944932_32	eggNOG-mapper	610130.Closa_0739	HNH nucleases	NA
UHGV-1944932_32	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1944932_32	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1944932_35	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1944932_35	UniRef90	UniRef90_A0A1H0WDQ8	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1944932_35	eggNOG-mapper	1235798.C817_02581	Phage terminase-like protein large subunit	NA
UHGV-1944932_35	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1944932_35	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1944932_35	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1944932_35	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1944932_36	PHROG	phrog_12	portal protein	head and packaging
UHGV-1944932_36	UniRef90	UniRef90_A0A1H0WEE9	Phage portal protein, HK97 family	NA
UHGV-1944932_36	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-1944932_36	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1944932_36	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1944932_36	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1944932_36	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1944932_37	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1944932_37	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1944932_37	UniRef90	UniRef90_A0A6N2ZRR0	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1944932_37	eggNOG-mapper	349161.Dred_2605	Belongs to the peptidase S14 family	NA
UHGV-1944932_37	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1944932_37	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1944932_37	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-1944932_38	PHROG	phrog_10	major head protein	head and packaging
UHGV-1944932_38	UniRef90	UniRef90_A0A1H0WDJ5	Phage major capsid protein, HK97 family	NA
UHGV-1944932_38	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-1944932_38	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1944932_38	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-1944932_38	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1944932_38	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1944932_38	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1944932_39	PHROG	phrog_749	NA	unknown function
UHGV-1944932_39	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-1944932_40	PHROG	phrog_19734	NA	unknown function
UHGV-1944932_40	eggNOG-mapper	610130.Closa_0746	NA	NA
UHGV-1944932_41	UniRef90	UniRef90_A0A1H0WFA3	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1944932_41	eggNOG-mapper	1497679.EP56_05750	NA	NA
UHGV-1944932_41	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1944932_41	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1944932_42	PHROG	phrog_78	tail terminator	connector
UHGV-1944932_42	eggNOG-mapper	1158604.I591_01762	NA	NA
UHGV-1944932_42	Structural annotation	PF20765	NA	NA
UHGV-1944932_43	PHROG	phrog_88	major tail protein	tail
UHGV-1944932_43	UniRef90	UniRef90_A0A1H0WFC2	Phage major tail protein, phi13 family	NA
UHGV-1944932_43	eggNOG-mapper	1497679.EP56_05760	phage tail protein	NA
UHGV-1944932_43	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1944932_43	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1944932_44	PHROG	phrog_709	NA	unknown function
UHGV-1944932_44	UniRef90	UniRef90_A0A1E5GU35	Rho_N domain-containing protein	NA
UHGV-1944932_44	eggNOG-mapper	1497679.EP56_05775	NA	NA
UHGV-1944932_44	Structural annotation	PF11836	NA	NA
UHGV-1944932_45	PHROG	phrog_5755	tail length tape measure protein	tail
UHGV-1944932_45	UniRef90	UniRef90_A0A6N2ZSZ1	Phage-related minor tail protein	NA
UHGV-1944932_45	eggNOG-mapper	638301.HMPREF0444_1498	Tail tape measure protein, TP901 family	NA
UHGV-1944932_45	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1944932_45	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1944932_45	Structural annotation	PF10145, MF_04138, TIGR01760, COG5280	NA	NA
UHGV-1944932_46	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1944932_46	UniRef90	UniRef90_A0A1H0WHV5	Putative phage tail component, N-terminal domain-containing protein	NA
UHGV-1944932_46	eggNOG-mapper	562981.HMPREF0428_00971	phage tail	NA
UHGV-1944932_46	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1944932_46	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1944932_46	COG	COG4722	Phage-related protein YomH	NA
UHGV-1944932_46	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1944932_47	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1944932_47	UniRef90	UniRef90_A0A6N2ZS53	Prophage endopeptidase tail	NA
UHGV-1944932_47	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-1944932_47	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1944932_47	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1944932_47	COG	COG4926	Phage-related protein	NA
UHGV-1944932_47	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1944932_48	PHROG	phrog_19280	NA	unknown function
UHGV-1944932_48	eggNOG-mapper	1160721.RBI_I01572	NA	NA
UHGV-1944932_48	Pfam	PF10651	BppU N-terminal domain	BppU_N