UHGV-1945429

Genome information

Genome length 37,114 bps

CDS count 64

Completeness 83.58% (medium-quality)

geNomad score 0.9465

Prediction confidence Confident

Genome information
Genome ID	UHGV-1945429
vOTU ID	vOTU-030699
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300008421\|Ga0115417_100063\|provirus_384_52070
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.58% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	25
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9465
Virus hallmark genes (geNomad)	18
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	58.11
Jumbo phage	No

Genome content
Genome length	37,114 bps
GC content	48.78%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	88.41%
Average CDS length	516.94 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1945429_1	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1945429_3	PHROG	phrog_585	NA	unknown function
UHGV-1945429_3	UniRef90	UniRef90_UPI0009F52DDD	NA	NA
UHGV-1945429_3	eggNOG-mapper	398578.Daci_3251	NA	NA
UHGV-1945429_3	Pfam	PF10711	NA	DUF2513
UHGV-1945429_3	Structural annotation	PF10711, MF_01819, TIGR04176, COG1695	NA	NA
UHGV-1945429_4	PHROG	phrog_14367	NA	unknown function
UHGV-1945429_4	UniRef90	UniRef90_A0A8E4BQW3	LysM domain-containing protein	NA
UHGV-1945429_4	Pfam	PF01476	LysM domain	LysM
UHGV-1945429_4	COG	COG1388	LysM repeat	NA
UHGV-1945429_4	Structural annotation	MF_02014, NF010723, COG1388	NA	NA
UHGV-1945429_9	PHROG	phrog_15968	anti-repressor	transcription regulation
UHGV-1945429_9	UniRef90	UniRef90_UPI00194F0FEF	phage antirepressor KilAC domain-containing protein	NA
UHGV-1945429_9	eggNOG-mapper	568816.Acin_1403	Phage antirepressor protein KilAC domain	NA
UHGV-1945429_9	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1945429_9	COG	COG3617	Prophage antirepressor	NA
UHGV-1945429_9	Structural annotation	PF03374	NA	NA
UHGV-1945429_11	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-1945429_11	Structural annotation	PF01844, NF040563	NA	NA
UHGV-1945429_13	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1945429_13	eggNOG-mapper	397288.C806_00084	NA	NA
UHGV-1945429_13	Structural annotation	PF11726	NA	NA
UHGV-1945429_15	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1945429_15	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1945429_15	UniRef90	UniRef90_A0A8D5A5X5	Single-stranded DNA-binding protein	NA
UHGV-1945429_15	eggNOG-mapper	742743.HMPREF9453_01578	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1945429_15	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1945429_15	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1945429_15	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1945429_15	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1945429_15	Structural annotation	PF00436, MF_00984, TIGR00621, COG0629	NA	NA
UHGV-1945429_18	PHROG	phrog_16126	NA	unknown function
UHGV-1945429_19	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-1945429_19	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-1945429_19	UniRef90	UniRef90_A0A173ZVR9	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-1945429_19	eggNOG-mapper	1401067.HMPREF0872_03915	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-1945429_19	Pfam	PF00692	dUTPase	dUTPase
UHGV-1945429_19	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-1945429_19	Structural annotation	PF00692, MF_00116, NF010561, COG0756	NA	NA
UHGV-1945429_21	PHROG	phrog_236	nucleotide kinase	other
UHGV-1945429_21	UniRef90	UniRef90_UPI001478DC38	NA	NA
UHGV-1945429_21	Pfam	PF11753	NA	DUF3310
UHGV-1945429_22	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-1945429_22	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1945429_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1945429_24	eggNOG-mapper	1408438.JADD01000033_gene525	NA	NA
UHGV-1945429_24	Pfam	PF07374	NA	DUF1492
UHGV-1945429_24	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1945429_24	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-1945429_26	eggNOG-mapper	699218.HMPREF0889_1153	NA	NA
UHGV-1945429_27	KOfam	K22014	Nu1, Noh; terminase small subunit / prophage DNA-packing protein	NA
UHGV-1945429_27	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-1945429_27	eggNOG-mapper	1273103.NM10_02282	NA	NA
UHGV-1945429_27	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-1945429_28	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-1945429_28	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-1945429_28	UniRef90	UniRef90_UPI00034E11E3	phage terminase large subunit family protein	NA
UHGV-1945429_28	eggNOG-mapper	1064535.MELS_1091	Phage terminase large subunit (GpA)	NA
UHGV-1945429_28	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-1945429_28	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-1945429_28	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-1945429_28	HAMAP	MF_04144	Terminase, large subunit	NA
UHGV-1945429_28	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-1945429_29	PHROG	phrog_118	head-tail adaptor	connector
UHGV-1945429_29	UniRef90	UniRef90_UPI00034E6D13	NA	NA
UHGV-1945429_29	eggNOG-mapper	1064535.MELS_1092	NA	NA
UHGV-1945429_29	Pfam	PF19645	NA	DUF6148
UHGV-1945429_29	Structural annotation	PF19645	NA	NA
UHGV-1945429_30	PHROG	phrog_21	portal protein	head and packaging
UHGV-1945429_30	UniRef90	UniRef90_UPI001E50A69D	phage portal protein	NA
UHGV-1945429_30	eggNOG-mapper	1280706.AUJE01000010_gene655	Phage portal protein	NA
UHGV-1945429_30	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-1945429_30	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-1945429_30	COG	COG5511	Phage capsid protein	NA
UHGV-1945429_30	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-1945429_31	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1945429_31	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1945429_31	UniRef90	UniRef90_S7J8Y4	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1945429_31	eggNOG-mapper	1064535.MELS_1094	Clp protease	NA
UHGV-1945429_31	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1945429_31	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1945429_31	Structural annotation	PF00574, MF_00444, NF011089, COG0740	NA	NA
UHGV-1945429_32	PHROG	phrog_49	head decoration	head and packaging
UHGV-1945429_32	UniRef90	UniRef90_UPI00073F9C7C	head decoration protein	NA
UHGV-1945429_32	eggNOG-mapper	1064535.MELS_1095	Bacteriophage lambda head decoration protein D	NA
UHGV-1945429_32	Pfam	PF02924	Bacteriophage lambda head decoration protein D	HDPD
UHGV-1945429_32	Structural annotation	PF02924	NA	NA
UHGV-1945429_33	PHROG	phrog_29	major head protein	head and packaging
UHGV-1945429_33	UniRef90	UniRef90_UPI00073E3456	major capsid protein	NA
UHGV-1945429_33	eggNOG-mapper	1064535.MELS_1096	Phage major capsid protein E	NA
UHGV-1945429_33	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-1945429_33	Structural annotation	PF03864, MF_04133, TIGR04387, COG4653	NA	NA
UHGV-1945429_35	PHROG	phrog_2551	minor tail protein	tail
UHGV-1945429_35	UniRef90	UniRef90_R6I9C8	Sugar ABC transporter ATP-binding protein	NA
UHGV-1945429_35	eggNOG-mapper	1262914.BN533_01003	Product inferred by homology to UniProt	NA
UHGV-1945429_35	Structural annotation	PF13856	NA	NA
UHGV-1945429_36	PHROG	phrog_27	tail completion or Neck1 protein	connector
UHGV-1945429_36	UniRef90	UniRef90_A0A259U590	Prophage minor tail protein Z	NA
UHGV-1945429_36	eggNOG-mapper	1262914.BN533_01004	Prophage minor tail protein Z (GPZ)	NA
UHGV-1945429_36	Pfam	PF06763	Prophage minor tail protein Z (GPZ)	Minor_tail_Z
UHGV-1945429_36	Structural annotation	PF06763	NA	NA
UHGV-1945429_37	PHROG	phrog_2581	virion structural protein	head and packaging
UHGV-1945429_37	eggNOG-mapper	1262914.BN533_00996	NA	NA
UHGV-1945429_37	Structural annotation	PF09646, COG5003	NA	NA
UHGV-1945429_38	PHROG	phrog_4089	NA	unknown function
UHGV-1945429_38	eggNOG-mapper	1262914.BN533_01006	Product inferred by homology to UniProt	NA
UHGV-1945429_39	KOfam	K06907	NA	NA
UHGV-1945429_39	PHROG	phrog_23	tail sheath	tail
UHGV-1945429_39	UniRef90	UniRef90_A0A2A2IKV4	Phage tail protein	NA
UHGV-1945429_39	eggNOG-mapper	572547.Amico_1114	tail sheath protein	NA
UHGV-1945429_39	COG	COG3497	Phage tail sheath protein FI	NA
UHGV-1945429_39	Structural annotation	PF10758, TIGR03355, COG3497	NA	NA
UHGV-1945429_40	KOfam	K06908	NA	NA
UHGV-1945429_40	PHROG	phrog_55	head closure	connector
UHGV-1945429_40	UniRef90	UniRef90_A0A2A2ILA9	Phage tail protein	NA
UHGV-1945429_40	eggNOG-mapper	1262914.BN533_01373	tail tube protein	NA
UHGV-1945429_40	Pfam	PF04985	Phage tail tube protein FII	Phage_tube
UHGV-1945429_40	COG	COG3498	Phage tail tube protein FII	NA
UHGV-1945429_40	Structural annotation	PF04985, TIGR01611, COG3498	NA	NA
UHGV-1945429_41	PHROG	phrog_3140	tail assembly chaperone	tail
UHGV-1945429_41	UniRef90	UniRef90_R6ILQ4	Mu-like prophage FluMu protein gp41	NA
UHGV-1945429_41	eggNOG-mapper	1262914.BN533_01372	NA	NA
UHGV-1945429_41	Pfam	PF10109	Phage tail assembly chaperone proteins, E, or 41 or 14	Phage_TAC_7
UHGV-1945429_41	Structural annotation	PF10109	NA	NA
UHGV-1945429_44	PHROG	phrog_28	tail length tape measure protein	tail
UHGV-1945429_44	UniRef90	UniRef90_J4UQT5	Tail tape measure protein, TIGR01760 family	NA
UHGV-1945429_44	eggNOG-mapper	936573.HMPREF1147_1730	Phage-related minor tail protein	NA
UHGV-1945429_44	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1945429_44	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1945429_44	COG	COG5283	Phage-related tail protein	NA
UHGV-1945429_44	Structural annotation	PF10145, MF_04138, TIGR01760, COG5280	NA	NA
UHGV-1945429_45	PHROG	phrog_46	tail protein	tail
UHGV-1945429_45	UniRef90	UniRef90_A0A2A2IIW8	Phage tail protein	NA
UHGV-1945429_45	eggNOG-mapper	1262914.BN533_01376	Phage Tail Protein X	NA
UHGV-1945429_45	Pfam	PF05489	Phage Tail Protein X	Phage_tail_X
UHGV-1945429_45	COG	COG5004	P2-like prophage tail protein X	NA
UHGV-1945429_45	Structural annotation	PF05489, TIGR02899, COG5004	NA	NA
UHGV-1945429_46	KOfam	K06905	NA	NA
UHGV-1945429_46	PHROG	phrog_52	tail protein	tail
UHGV-1945429_46	UniRef90	UniRef90_J4UR03	Phage late control protein D protein	NA
UHGV-1945429_46	eggNOG-mapper	1280706.AUJE01000010_gene671	COG3500 Phage protein D	NA
UHGV-1945429_46	Pfam	PF05954	Phage tail baseplate hub (GPD)	Phage_GPD
UHGV-1945429_46	COG	COG3500	NA	NA
UHGV-1945429_46	Structural annotation	PF05954, NF033848, COG3500	NA	NA
UHGV-1945429_47	PHROG	phrog_6142	baseplate assembly protein	tail
UHGV-1945429_47	UniRef90	UniRef90_A0A6N7VMZ2	Phage baseplate assembly protein V	NA
UHGV-1945429_47	eggNOG-mapper	1262914.BN533_01719	Phage baseplate assembly protein V	NA
UHGV-1945429_47	NCBIFam	TIGR01644.1	phage baseplate assembly protein V	NA
UHGV-1945429_47	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-1945429_47	Structural annotation	PF04717, MF_00075, TIGR01644, COG4540	NA	NA
UHGV-1945429_48	PHROG	phrog_281	PAAR motif of membran proteins	moron, auxiliary metabolic gene and host takeover
UHGV-1945429_48	UniRef90	UniRef90_A0A354WRB7	PaaR repeat-containing protein	NA
UHGV-1945429_48	eggNOG-mapper	1262914.BN533_01715	PAAR repeat-containing protein	NA
UHGV-1945429_48	Pfam	PF05488	PAAR motif	PAAR_motif
UHGV-1945429_48	COG	COG4104	Zn-binding Pro-Ala-Ala-Arg (PAAR) domain, involved in Type VI secretion	NA
UHGV-1945429_48	Structural annotation	PF05488, NF033420, COG4104	NA	NA
UHGV-1945429_49	KOfam	K06906	NA	NA
UHGV-1945429_49	PHROG	phrog_76	tail protein	tail
UHGV-1945429_49	UniRef90	UniRef90_A0A6N7W1P7	Phage tail protein	NA
UHGV-1945429_49	eggNOG-mapper	1262914.BN533_01714	Phage P2 GpU	NA
UHGV-1945429_49	Pfam	PF06995	Phage P2 GpU	Phage_P2_GpU
UHGV-1945429_49	COG	COG3499	NA	NA
UHGV-1945429_49	Structural annotation	PF06995, TIGR01633, COG3499	NA	NA
UHGV-1945429_50	KOfam	K06903	NA	NA
UHGV-1945429_50	PHROG	phrog_43	baseplate wedge subunit	tail
UHGV-1945429_50	UniRef90	UniRef90_A0A6N7W1K0	GPW/gp25 family protein	NA
UHGV-1945429_50	eggNOG-mapper	1064535.MELS_1110	GPW Gp25 family protein	NA
UHGV-1945429_50	Pfam	PF04965	Baseplate wedge protein gp25	GPW_gp25
UHGV-1945429_50	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-1945429_50	Structural annotation	PF04965, TIGR03357, COG3628	NA	NA
UHGV-1945429_51	PHROG	phrog_6	baseplate protein	tail
UHGV-1945429_51	UniRef90	UniRef90_UPI001D032AB4	baseplate J/gp47 family protein	NA
UHGV-1945429_51	eggNOG-mapper	927704.SELR_16650	Baseplate J-like protein	NA
UHGV-1945429_51	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-1945429_51	COG	COG3948	Phage-related baseplate assembly protein	NA
UHGV-1945429_51	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3948	NA	NA
UHGV-1945429_52	PHROG	phrog_14404	baseplate protein	tail
UHGV-1945429_52	UniRef90	UniRef90_UPI00034E1C3D	phage tail protein I	NA
UHGV-1945429_52	eggNOG-mapper	927704.SELR_16640	Phage tail protein (Tail_P2_I)	NA
UHGV-1945429_52	Pfam	PF09684	Phage tail protein (Tail_P2_I)	Tail_P2_I
UHGV-1945429_52	NCBIFam	TIGR01634.1	phage tail protein I	NA
UHGV-1945429_52	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-1945429_52	Structural annotation	PF09684, TIGR01634, COG4385	NA	NA
UHGV-1945429_53	PHROG	phrog_7037	tail fiber protein	tail
UHGV-1945429_53	UniRef90	UniRef90_UPI00034E606D	phage tail protein	NA
UHGV-1945429_53	eggNOG-mapper	927704.SELR_16630	Phage tail-collar fibre protein	NA
UHGV-1945429_53	Pfam	PF12571	Phage tail-collar fibre protein	DUF3751
UHGV-1945429_53	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-1945429_53	Structural annotation	PF12571	NA	NA
UHGV-1945429_54	eggNOG-mapper	1273103.NM10_00979	NA	NA
UHGV-1945429_54	Structural annotation	PF10651	NA	NA
UHGV-1945429_55	PHROG	phrog_2824	virion structural protein	head and packaging
UHGV-1945429_55	UniRef90	UniRef90_A0A269TCG6	Mtd_N domain-containing protein	NA
UHGV-1945429_55	eggNOG-mapper	696281.Desru_3489	exo-alpha-(2->6)-sialidase activity	NA
UHGV-1945429_55	Pfam	PF18454	Major tropism determinant N-terminal domain	Mtd_N
UHGV-1945429_55	COG	COG4409	Neuraminidase (sialidase) NanH, contains C-terminal autotransporter domain	NA
UHGV-1945429_55	Structural annotation	PF18454	NA	NA
UHGV-1945429_56	PHROG	phrog_31660	tail fiber protein	tail
UHGV-1945429_56	UniRef90	UniRef90_A0A1G9QX40	Mtd_N domain-containing protein	NA
UHGV-1945429_56	eggNOG-mapper	1306174.JODP01000006_gene3223	NA	NA
UHGV-1945429_56	Pfam	PF18454	Major tropism determinant N-terminal domain	Mtd_N
UHGV-1945429_56	Structural annotation	PF18454	NA	NA
UHGV-1945429_57	eggNOG-mapper	1273103.NM10_08099	NA	NA
UHGV-1945429_57	Structural annotation	NF012201	NA	NA
UHGV-1945429_58	KOfam	K14059	int; integrase	NA
UHGV-1945429_58	PHROG	phrog_1	integrase	integration and excision
UHGV-1945429_58	UniRef90	UniRef90_A0A1M6NZU6	Site-specific recombinase XerD	NA
UHGV-1945429_58	eggNOG-mapper	1273103.NM10_01678	Phage integrase family	NA
UHGV-1945429_58	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-1945429_58	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1945429_58	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1945429_58	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-1945429_61	UniRef90	UniRef90_R6AE25	Conserved domain protein	NA
UHGV-1945429_61	eggNOG-mapper	592028.GCWU000321_01470	Bacteriophage holin family	NA
UHGV-1945429_61	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1945429_61	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1945429_62	KOfam	K02395	flgJ; peptidoglycan hydrolase FlgJ	NA
UHGV-1945429_62	PHROG	phrog_3513	endolysin	lysis
UHGV-1945429_62	UniRef90	UniRef90_A1HR64	Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase	NA
UHGV-1945429_62	eggNOG-mapper	401526.TcarDRAFT_1294	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-1945429_62	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-1945429_62	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-1945429_62	Structural annotation	PF01832, NF038016, COG1705	NA	NA
UHGV-1945429_64	KOfam	K02652	pilB; type IV pilus assembly protein PilB	NA
UHGV-1945429_64	PHROG	phrog_19065	NA	unknown function
UHGV-1945429_64	UniRef90	UniRef90_R7CQB4	T2SP_E domain-containing protein	NA
UHGV-1945429_64	eggNOG-mapper	742743.HMPREF9453_01090	Type II IV secretion system protein	NA
UHGV-1945429_64	Pfam	PF00437	Type II/IV secretion system protein	T2SSE
UHGV-1945429_64	COG	COG2804	Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB	NA