UHGV-1946600

Genome information

vOTU vOTU-020444

Genome length 26,369 bps

CDS count 46

Completeness 73.53% (medium-quality)

geNomad score 0.9737

Prediction confidence Confident

Genome information
Genome ID	UHGV-1946600
vOTU ID	vOTU-020444
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300008547\|Ga0111055_100815
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.53% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9737
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.57
Jumbo phage	No

Genome content
Genome length	26,369 bps
GC content	46.39%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	87.36%
Average CDS length	506.02 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1946600_1	PHROG	phrog_267	major head protein	head and packaging
UHGV-1946600_1	UniRef90	UniRef90_A0A4P8IA69	Phage capsid and scaffold	NA
UHGV-1946600_1	eggNOG-mapper	748224.HMPREF9436_03335	NA	NA
UHGV-1946600_1	Structural annotation	PF11651, MF_04119, TIGR04387	NA	NA
UHGV-1946600_3	eggNOG-mapper	1121335.Clst_0388	NA	NA
UHGV-1946600_4	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1946600_4	UniRef90	UniRef90_UPI00191552C0	phage minor capsid protein	NA
UHGV-1946600_4	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-1946600_4	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1946600_4	COG	COG2369	NA	NA
UHGV-1946600_4	Structural annotation	PF06152	NA	NA
UHGV-1946600_5	PHROG	phrog_533	portal protein	head and packaging
UHGV-1946600_5	UniRef90	UniRef90_UPI001D71E5F8	phage portal protein	NA
UHGV-1946600_5	eggNOG-mapper	1120998.AUFC01000030_gene2232	NA	NA
UHGV-1946600_5	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1946600_5	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1946600_6	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1946600_6	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1946600_6	UniRef90	UniRef90_UPI00083395FE	PBSX family phage terminase large subunit	NA
UHGV-1946600_6	eggNOG-mapper	592031.GCWU000322_00074	Phage terminase large subunit	NA
UHGV-1946600_6	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1946600_6	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1946600_6	COG	COG1783	Phage terminase large subunit	NA
UHGV-1946600_6	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1946600_7	PHROG	phrog_2412	NA	unknown function
UHGV-1946600_7	UniRef90	UniRef90_A0A4V1EFZ3	NA	NA
UHGV-1946600_7	eggNOG-mapper	742723.HMPREF9477_00912	NA	NA
UHGV-1946600_8	Pfam	PF08305	NPCBM/NEW2 domain	NPCBM
UHGV-1946600_9	Structural annotation	TIGR01636	NA	NA
UHGV-1946600_12	PHROG	phrog_111	DNA methyltransferase	other
UHGV-1946600_12	UniRef90	UniRef90_A0A1C6GCR8	Phage N-6-adenine-methyltransferase	NA
UHGV-1946600_12	eggNOG-mapper	445972.ANACOL_03344	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-1946600_12	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-1946600_12	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-1946600_12	Structural annotation	PF05869, TIGR01712, COG0338	NA	NA
UHGV-1946600_15	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1946600_15	PHROG	phrog_363	DNA methyltransferase	other
UHGV-1946600_15	UniRef90	UniRef90_UPI0008F89ADD	DNA cytosine methyltransferase	NA
UHGV-1946600_15	eggNOG-mapper	742738.HMPREF9460_04053	C-5 cytosine-specific DNA methylase	NA
UHGV-1946600_15	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-1946600_15	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1946600_15	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1946600_15	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1946600_15	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-1946600_16	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1946600_16	UniRef90	UniRef90_UPI00133179CA	NA	NA
UHGV-1946600_16	eggNOG-mapper	445974.CLORAM_02947	NA	NA
UHGV-1946600_16	Pfam	PF06356	NA	DUF1064
UHGV-1946600_16	Structural annotation	PF06356	NA	NA
UHGV-1946600_17	PHROG	phrog_5708	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1946600_17	UniRef90	UniRef90_A0A659S739	DNA replication protein	NA
UHGV-1946600_17	eggNOG-mapper	1415774.U728_1701	DnaD domain protein	NA
UHGV-1946600_17	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1946600_17	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-1946600_18	PHROG	phrog_2113	NA	unknown function
UHGV-1946600_18	eggNOG-mapper	1160721.RBI_II00485	NA	NA
UHGV-1946600_18	Structural annotation	PF21715	NA	NA
UHGV-1946600_19	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1946600_19	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1946600_19	UniRef90	UniRef90_A0A316T6C0	Single-stranded DNA-binding protein	NA
UHGV-1946600_19	eggNOG-mapper	445972.ANACOL_01827	Single-stranded DNA-binding protein	NA
UHGV-1946600_19	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1946600_19	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1946600_19	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1946600_19	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1946600_19	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1946600_20	PHROG	phrog_7566	NA	unknown function
UHGV-1946600_20	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-1946600_20	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-1946600_21	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1946600_21	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-1946600_21	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-1946600_21	Structural annotation	PF05772	NA	NA
UHGV-1946600_22	PHROG	phrog_14970	NA	unknown function
UHGV-1946600_22	UniRef90	UniRef90_UPI001C037E14	Rad52/Rad22 family DNA repair protein	NA
UHGV-1946600_22	eggNOG-mapper	1128398.Curi_c14240	double-strand break repair protein	NA
UHGV-1946600_22	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-1946600_22	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-1946600_22	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-1946600_25	eggNOG-mapper	768710.DesyoDRAFT_1143	NA	NA
UHGV-1946600_31	UniRef90	UniRef90_UPI0018981209	helix-turn-helix transcriptional regulator	NA
UHGV-1946600_31	eggNOG-mapper	411461.DORFOR_00030	Helix-turn-helix XRE-family like proteins	NA
UHGV-1946600_31	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1946600_32	UniRef90	UniRef90_A0A3A9FBT5	XRE family transcriptional regulator	NA
UHGV-1946600_32	eggNOG-mapper	411463.EUBVEN_00115	Helix-turn-helix domain	NA
UHGV-1946600_32	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1946600_32	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1946600_32	Structural annotation	PF01381, MF_02017, NF041951, COG1396	NA	NA
UHGV-1946600_34	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1946600_34	UniRef90	UniRef90_A0A417U5W7	XRE family transcriptional regulator	NA
UHGV-1946600_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1946600_34	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1946600_34	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1946600_35	KOfam	K14059	int; integrase	NA
UHGV-1946600_35	PHROG	phrog_1	integrase	integration and excision
UHGV-1946600_35	UniRef90	UniRef90_A0A3D5PC96	Site-specific integrase	NA
UHGV-1946600_35	eggNOG-mapper	428125.CLOLEP_02743	Belongs to the 'phage' integrase family	NA
UHGV-1946600_35	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1946600_35	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1946600_35	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1946600_35	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1946600_36	KOfam	K01971	ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]	NA
UHGV-1946600_36	PHROG	phrog_114	ATP-dependent DNA ligase	DNA, RNA and nucleotide metabolism
UHGV-1946600_36	UniRef90	UniRef90_UPI0011DE150D	non-homologous end-joining DNA ligase	NA
UHGV-1946600_36	eggNOG-mapper	742741.HMPREF9475_03723	ATP dependent DNA ligase domain	NA
UHGV-1946600_36	Pfam	PF01068	ATP dependent DNA ligase domain	DNA_ligase_A_M
UHGV-1946600_36	Pfam	PF04679	ATP dependent DNA ligase C terminal region	DNA_ligase_A_C
UHGV-1946600_36	COG	COG1793	ATP-dependent DNA ligase	NA
UHGV-1946600_36	Structural annotation	PF01068, MF_00407, NF005796, COG1793	NA	NA
UHGV-1946600_37	KOfam	K10979	ku; DNA end-binding protein Ku	NA
UHGV-1946600_37	PHROG	phrog_4873	Ku-like DNA end binding	DNA, RNA and nucleotide metabolism
UHGV-1946600_37	UniRef90	UniRef90_A0A498CZA8	Non-homologous end joining protein Ku	NA
UHGV-1946600_37	eggNOG-mapper	428125.CLOLEP_03535	With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD	NA
UHGV-1946600_37	Pfam	PF02735	Ku70/Ku80 beta-barrel domain	Ku
UHGV-1946600_37	NCBIFam	TIGR02772.1	Ku protein	NA
UHGV-1946600_37	COG	COG1273	Non-homologous end joining protein Ku, dsDNA break repair	NA
UHGV-1946600_37	HAMAP	MF_01875	Non-homologous end joining protein Ku [ku]	NA
UHGV-1946600_37	Structural annotation	PF02735, MF_01875, TIGR02772, COG1273	NA	NA
UHGV-1946600_38	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-1946600_38	Structural annotation	PF13560, TIGR02612, COG1396	NA	NA
UHGV-1946600_42	KOfam	K14059	int; integrase	NA
UHGV-1946600_42	PHROG	phrog_1	integrase	integration and excision
UHGV-1946600_42	UniRef90	UniRef90_A0A1M5D7G2	Site-specific recombinase XerD (Fragment)	NA
UHGV-1946600_42	eggNOG-mapper	1033734.CAET01000033_gene4219	Belongs to the 'phage' integrase family	NA
UHGV-1946600_42	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1946600_42	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1946600_42	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1946600_42	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-1946600_43	PHROG	phrog_1281	NA	unknown function
UHGV-1946600_43	UniRef90	UniRef90_A0A1V5X7K8	NA	NA
UHGV-1946600_43	eggNOG-mapper	411459.RUMOBE_01368	Phage-associated protein	NA
UHGV-1946600_43	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-1946600_43	COG	COG3600	NA	NA
UHGV-1946600_45	PHROG	phrog_297	holin	lysis
UHGV-1946600_45	UniRef90	UniRef90_R5KU57	Holin	NA
UHGV-1946600_45	eggNOG-mapper	1229783.C273_06103	COG5546 Small integral membrane protein	NA
UHGV-1946600_45	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-1946600_45	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-1946600_45	COG	COG5546	NA	NA
UHGV-1946600_45	Structural annotation	COG5546	NA	NA