UHGV-1947142

Genome information

Genome length 34,681 bps

CDS count 45

Completeness 97.91% (high-quality)

geNomad score 0.9790

Prediction confidence Confident

Genome information
Genome ID	UHGV-1947142
vOTU ID	vOTU-059750
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300008482\|Ga0115187_100049\|provirus_3_34683
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.91% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9790
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	56.37
Jumbo phage	No

Genome content
Genome length	34,681 bps
GC content	45.11%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	91.85%
Average CDS length	710.67 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1947142_2	eggNOG-mapper	1410617.JHXH01000006_gene232	NA	NA
UHGV-1947142_2	Structural annotation	PF20942	NA	NA
UHGV-1947142_4	PHROG	phrog_9680	host range and adsorption protein	moron, auxiliary metabolic gene and host takeover
UHGV-1947142_4	eggNOG-mapper	1160721.RBI_II00526	NA	NA
UHGV-1947142_4	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-1947142_5	PHROG	phrog_1194	NA	unknown function
UHGV-1947142_5	eggNOG-mapper	1160721.RBI_II00527	NA	NA
UHGV-1947142_5	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1947142_6	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1947142_6	UniRef90	UniRef90_R6TDK7	Phage-related protein-like protein	NA
UHGV-1947142_6	eggNOG-mapper	1226322.HMPREF1545_00059	tape measure	NA
UHGV-1947142_6	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1947142_6	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-1947142_7	PHROG	phrog_706	NA	unknown function
UHGV-1947142_7	UniRef90	UniRef90_UPI001B3C82AE	Gp15 family bacteriophage protein	NA
UHGV-1947142_7	eggNOG-mapper	1449050.JNLE01000003_gene3882	Bacteriophage Gp15 protein	NA
UHGV-1947142_7	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1947142_7	Structural annotation	PF06854	NA	NA
UHGV-1947142_8	PHROG	phrog_11299	NA	unknown function
UHGV-1947142_8	Structural annotation	PF20378	NA	NA
UHGV-1947142_9	PHROG	phrog_3099	NA	unknown function
UHGV-1947142_9	eggNOG-mapper	1160721.RBI_II00532	NA	NA
UHGV-1947142_9	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1947142_10	PHROG	phrog_3266	tail completion	connector
UHGV-1947142_10	eggNOG-mapper	411902.CLOBOL_00130	NA	NA
UHGV-1947142_10	Structural annotation	PF20765	NA	NA
UHGV-1947142_11	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1947142_11	UniRef90	UniRef90_UPI00143BEF55	minor capsid protein	NA
UHGV-1947142_11	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-1947142_11	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1947142_11	Structural annotation	PF11114	NA	NA
UHGV-1947142_12	PHROG	phrog_3366	NA	unknown function
UHGV-1947142_12	eggNOG-mapper	1449050.JNLE01000003_gene3887	NA	NA
UHGV-1947142_12	Pfam	PF20536	NA	DUF6751
UHGV-1947142_12	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-1947142_13	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1947142_13	UniRef90	UniRef90_A0A371AQT0	NA	NA
UHGV-1947142_13	eggNOG-mapper	1304866.K413DRAFT_3039	NA	NA
UHGV-1947142_14	PHROG	phrog_544	major head protein	head and packaging
UHGV-1947142_14	UniRef90	UniRef90_R6T873	Major head protein	NA
UHGV-1947142_14	eggNOG-mapper	936580.HMPREF1516_0718	NA	NA
UHGV-1947142_14	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-1947142_14	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1947142_15	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1947142_15	UniRef90	UniRef90_R6U550	Phage minor structural protein GP20	NA
UHGV-1947142_15	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-1947142_15	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1947142_15	Structural annotation	PF06810	NA	NA
UHGV-1947142_16	Structural annotation	PF12305	NA	NA
UHGV-1947142_17	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1947142_17	UniRef90	UniRef90_R6SXL7	Phage minor capsid protein 2	NA
UHGV-1947142_17	eggNOG-mapper	658655.HMPREF0988_02563	Phage minor capsid protein 2	NA
UHGV-1947142_17	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1947142_17	COG	COG2369	NA	NA
UHGV-1947142_17	Structural annotation	PF06152	NA	NA
UHGV-1947142_18	PHROG	phrog_533	portal protein	head and packaging
UHGV-1947142_18	UniRef90	UniRef90_R6TDI6	Phage portal protein SPP1 Gp6-like	NA
UHGV-1947142_18	eggNOG-mapper	1304866.K413DRAFT_3035	NA	NA
UHGV-1947142_18	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1947142_19	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1947142_19	PHROG	phrog_18557	terminase large subunit	head and packaging
UHGV-1947142_19	UniRef90	UniRef90_A0A1C6IMR2	Phage terminase, large subunit, PBSX family	NA
UHGV-1947142_19	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-1947142_19	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1947142_19	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1947142_19	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1947142_19	COG	COG1783	Phage terminase large subunit	NA
UHGV-1947142_19	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1947142_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1947142_21	UniRef90	UniRef90_A0A371AT86	NA	NA
UHGV-1947142_23	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-1947142_23	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-1947142_23	UniRef90	UniRef90_A0A356CZ91	DNA primase	NA
UHGV-1947142_23	eggNOG-mapper	1410670.JHXF01000015_gene2274	Phage plasmid primase, P4 family	NA
UHGV-1947142_23	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-1947142_23	Pfam	PF19263	NA	DUF5906
UHGV-1947142_23	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-1947142_23	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-1947142_23	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-1947142_23	Structural annotation	PF08706, PF05272, PF02257, MF_04000, NF011296, COG3378, COG4983	NA	NA
UHGV-1947142_24	PHROG	phrog_378	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1947142_24	UniRef90	UniRef90_A0A373SL44	NA	NA
UHGV-1947142_24	eggNOG-mapper	1423807.BACO01000050_gene1454	NA	NA
UHGV-1947142_24	Pfam	PF05037	NA	DUF669
UHGV-1947142_24	Structural annotation	PF05037, NF004948	NA	NA
UHGV-1947142_25	PHROG	phrog_5702	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1947142_25	UniRef90	UniRef90_A0A373SNE0	VRR-NUC domain-containing protein	NA
UHGV-1947142_25	eggNOG-mapper	1410670.JHXF01000015_gene2271	VRR_NUC	NA
UHGV-1947142_25	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-1947142_25	Structural annotation	PF03838, MF_00130, NF002585, COG3331	NA	NA
UHGV-1947142_26	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-1947142_26	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1947142_26	UniRef90	UniRef90_A0A356CZA9	Helicase	NA
UHGV-1947142_26	eggNOG-mapper	1410670.JHXF01000015_gene2270	helicase	NA
UHGV-1947142_26	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-1947142_26	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-1947142_26	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1947142_26	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-1947142_26	Structural annotation	PF04851, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-1947142_27	PHROG	phrog_1366	NA	unknown function
UHGV-1947142_27	UniRef90	UniRef90_R6S946	AAA domain-containing protein	NA
UHGV-1947142_27	eggNOG-mapper	1410670.JHXF01000015_gene2269	AAA domain	NA
UHGV-1947142_27	Pfam	PF13479	AAA domain	AAA_24
UHGV-1947142_27	COG	COG0468	RecA/RadA recombinase	NA
UHGV-1947142_27	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-1947142_28	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-1947142_28	UniRef90	UniRef90_UPI0019171ADA	siphovirus Gp157 family protein	NA
UHGV-1947142_28	eggNOG-mapper	881621.LIV_2167	Siphovirus Gp157	NA
UHGV-1947142_28	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-1947142_28	Structural annotation	PF05565, NF002139	NA	NA
UHGV-1947142_29	PHROG	phrog_15609	NA	unknown function
UHGV-1947142_29	UniRef90	UniRef90_A0A373SLQ6	NA	NA
UHGV-1947142_29	eggNOG-mapper	641112.ACOK01000073_gene2872	NA	NA
UHGV-1947142_29	Structural annotation	PF11300, NF033725	NA	NA
UHGV-1947142_30	PHROG	phrog_8470	NA	unknown function
UHGV-1947142_30	UniRef90	UniRef90_UPI0019175B9C	PcfJ domain-containing protein	NA
UHGV-1947142_30	eggNOG-mapper	641112.ACOK01000073_gene2870	PcfJ-like protein	NA
UHGV-1947142_30	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-1947142_30	Structural annotation	PF14284	NA	NA
UHGV-1947142_31	PHROG	phrog_38338	NA	unknown function
UHGV-1947142_31	UniRef90	UniRef90_UPI00137B3A8C	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-1947142_31	eggNOG-mapper	641112.ACOK01000073_gene2869	NA	NA
UHGV-1947142_32	PHROG	phrog_22543	NA	unknown function
UHGV-1947142_32	UniRef90	UniRef90_A0A8D9PDK2	Zinc-ribbon containing domain	NA
UHGV-1947142_36	Structural annotation	PF11372	NA	NA
UHGV-1947142_39	PHROG	phrog_750	NA	unknown function
UHGV-1947142_39	eggNOG-mapper	742723.HMPREF9477_00931	NA	NA
UHGV-1947142_39	Structural annotation	PF13835, NF040858	NA	NA
UHGV-1947142_41	UniRef90	UniRef90_R6TEQ2	Conserved domain protein	NA
UHGV-1947142_41	eggNOG-mapper	246199.CUS_5910	NA	NA
UHGV-1947142_41	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-1947142_42	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1947142_42	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1947142_42	UniRef90	UniRef90_R6T2B0	Peptidase S24-like protein	NA
UHGV-1947142_42	eggNOG-mapper	246199.CUS_5911	NA	NA
UHGV-1947142_42	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-1947142_42	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1947142_42	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1947142_42	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, TIGR03070, COG1974, COG1476	NA	NA
UHGV-1947142_43	PHROG	phrog_10292	NA	unknown function
UHGV-1947142_43	UniRef90	UniRef90_R6T9F1	TM2 domain-containing protein	NA
UHGV-1947142_43	eggNOG-mapper	537013.CLOSTMETH_02269	TM2 domain	NA
UHGV-1947142_43	Pfam	PF05154	TM2 domain	TM2
UHGV-1947142_43	COG	COG2314	NA	NA
UHGV-1947142_44	KOfam	K14059	int; integrase	NA
UHGV-1947142_44	PHROG	phrog_1	integrase	integration and excision
UHGV-1947142_44	UniRef90	UniRef90_A0A1C6FGR9	Integrase	NA
UHGV-1947142_44	eggNOG-mapper	1408823.AXUS01000024_gene2685	Arm DNA-binding domain	NA
UHGV-1947142_44	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1947142_44	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1947142_44	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1947142_44	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1947142_45	eggNOG-mapper	1160721.RBI_II00383	NA	NA