UHGV-1948339

Genome information

Genome length 39,047 bps

CDS count 45

Completeness 99.90% (high-quality)

geNomad score 0.9654

Prediction confidence Confident

Genome information
Genome ID	UHGV-1948339
vOTU ID	vOTU-010338
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300008672\|Ga0111519_100080\|provirus_184_39230
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9654
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	8.08
Jumbo phage	No

Genome content
Genome length	39,047 bps
GC content	36.59%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	95.81%
Average CDS length	833.47 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1948339_1	KOfam	K06334	cotJC; spore coat protein JC	NA
UHGV-1948339_1	PHROG	phrog_7573	NA	unknown function
UHGV-1948339_1	UniRef90	UniRef90_R7BF28	Manganese containing catalase	NA
UHGV-1948339_1	eggNOG-mapper	1105031.HMPREF1141_2503	PFAM Manganese containing catalase	NA
UHGV-1948339_1	Pfam	PF05067	Manganese containing catalase	Mn_catalase
UHGV-1948339_1	COG	COG3546	Mn-containing catalase (includes spore coat protein CotJC)	NA
UHGV-1948339_1	Structural annotation	PF05067, TIGR04535, COG3546	NA	NA
UHGV-1948339_2	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1948339_2	PHROG	phrog_95	integrase	integration and excision
UHGV-1948339_2	UniRef90	UniRef90_A0A1Q6LBY2	Recombinase domain-containing protein	NA
UHGV-1948339_2	eggNOG-mapper	537013.CLOSTMETH_01697	Resolvase, N terminal domain	NA
UHGV-1948339_2	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1948339_2	Pfam	PF07508	Recombinase	Recombinase
UHGV-1948339_2	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1948339_2	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1948339_2	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA
UHGV-1948339_4	PHROG	phrog_1914	NA	unknown function
UHGV-1948339_4	UniRef90	UniRef90_UPI001D082E60	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-1948339_4	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-1948339_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1948339_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1948339_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1948339_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1948339_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1948339_5	UniRef90	UniRef90_A0A1Q6RAK6	HTH cro/C1-type domain-containing protein	NA
UHGV-1948339_5	eggNOG-mapper	1262914.BN533_01956	Helix-turn-helix XRE-family like proteins	NA
UHGV-1948339_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1948339_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1948339_5	Structural annotation	PF12844, MF_00535, NF041951, COG1396	NA	NA
UHGV-1948339_6	PHROG	phrog_4583	transcriptional repressor	transcription regulation
UHGV-1948339_6	UniRef90	UniRef90_UPI001D00C35A	helix-turn-helix domain-containing protein	NA
UHGV-1948339_6	eggNOG-mapper	768486.EHR_02785	NA	NA
UHGV-1948339_6	Pfam	PF08667	BetR domain	BetR
UHGV-1948339_6	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-1948339_7	PHROG	phrog_26314	NA	unknown function
UHGV-1948339_8	PHROG	phrog_1163	NA	unknown function
UHGV-1948339_8	UniRef90	UniRef90_R6RCD3	Putative phage replication protein	NA
UHGV-1948339_8	eggNOG-mapper	1295642.H839_08149	Replication initiation and membrane attachment	NA
UHGV-1948339_8	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-1948339_8	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-1948339_8	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1948339_8	Structural annotation	PF09524, TIGR02220	NA	NA
UHGV-1948339_9	PHROG	phrog_9804	NA	unknown function
UHGV-1948339_9	UniRef90	UniRef90_A0A8D9PDS1	Replisome organizer	NA
UHGV-1948339_9	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-1948339_9	Structural annotation	PF11417	NA	NA
UHGV-1948339_11	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1948339_11	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1948339_11	UniRef90	UniRef90_R6QMS7	Single-stranded DNA-binding protein	NA
UHGV-1948339_11	eggNOG-mapper	718252.FP2_06770	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1948339_11	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1948339_11	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1948339_11	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1948339_11	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1948339_11	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1948339_13	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1948339_13	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-1948339_14	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-1948339_14	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-1948339_14	UniRef90	UniRef90_R6RCD0	Putative phosphoadenosine phosphosulfate reductase	NA
UHGV-1948339_14	eggNOG-mapper	397291.C804_05723	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-1948339_14	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-1948339_14	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1948339_14	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-1948339_18	PHROG	phrog_10714	NA	unknown function
UHGV-1948339_18	eggNOG-mapper	428127.EUBDOL_01238	NA	NA
UHGV-1948339_19	PHROG	phrog_31463	NA	unknown function
UHGV-1948339_19	UniRef90	UniRef90_UPI001160B515	LemA family protein	NA
UHGV-1948339_20	PHROG	phrog_10714	NA	unknown function
UHGV-1948339_20	eggNOG-mapper	1120998.AUFC01000030_gene2222	NA	NA
UHGV-1948339_24	PHROG	phrog_34937	NA	unknown function
UHGV-1948339_27	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1948339_27	UniRef90	UniRef90_R6RCC6	Gp31	NA
UHGV-1948339_27	eggNOG-mapper	1415775.U729_1544	NA	NA
UHGV-1948339_27	Structural annotation	PF21578	NA	NA
UHGV-1948339_30	PHROG	phrog_1206	terminase small subunit	head and packaging
UHGV-1948339_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1948339_31	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-1948339_31	UniRef90	UniRef90_R6Q637	PBSX family phage terminase large subunit	NA
UHGV-1948339_31	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-1948339_31	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1948339_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-1948339_31	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1948339_32	PHROG	phrog_156	portal protein	head and packaging
UHGV-1948339_32	UniRef90	UniRef90_A0A8D9UH10	Portal protein	NA
UHGV-1948339_32	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-1948339_32	Structural annotation	PF16510, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-1948339_33	KOfam	K07584	NA	NA
UHGV-1948339_33	PHROG	phrog_4478	peptidase	other
UHGV-1948339_33	UniRef90	UniRef90_R6QMR4	Predicted ribosomal protein	NA
UHGV-1948339_33	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-1948339_33	COG	COG2868	NA	NA
UHGV-1948339_33	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-1948339_34	PHROG	phrog_13908	NA	unknown function
UHGV-1948339_34	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-1948339_35	PHROG	phrog_1357	major head protein	head and packaging
UHGV-1948339_35	UniRef90	UniRef90_A0A7G9GB60	N4-gp56 family major capsid protein	NA
UHGV-1948339_35	eggNOG-mapper	1410650.JHWL01000003_gene2830	NA	NA
UHGV-1948339_35	Pfam	PF13252	NA	DUF4043
UHGV-1948339_35	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-1948339_35	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1948339_37	PHROG	phrog_12105	NA	unknown function
UHGV-1948339_37	eggNOG-mapper	1226322.HMPREF1545_03850	NA	NA
UHGV-1948339_38	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-1948339_38	eggNOG-mapper	1519439.JPJG01000060_gene1903	NA	NA
UHGV-1948339_38	Structural annotation	PF11134, MF_01348, NF038015, NF038128, COG3292	NA	NA
UHGV-1948339_40	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-1948339_42	PHROG	phrog_22978	NA	unknown function
UHGV-1948339_42	UniRef90	UniRef90_R6ILN9	MuF_C domain-containing protein	NA
UHGV-1948339_42	eggNOG-mapper	1410650.JHWL01000003_gene2814	NA	NA
UHGV-1948339_42	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-1948339_42	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UHGV-1948339_43	PHROG	phrog_31398	NA	unknown function
UHGV-1948339_43	eggNOG-mapper	1160721.RBI_I01572	NA	NA
UHGV-1948339_43	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-1948339_44	PHROG	phrog_1863	NA	unknown function
UHGV-1948339_44	eggNOG-mapper	1203606.HMPREF1526_02027	NA	NA
UHGV-1948339_45	PHROG	phrog_8781	endolysin	lysis
UHGV-1948339_45	UniRef90	UniRef90_R6Q625	Lysin	NA
UHGV-1948339_45	eggNOG-mapper	1283338.Q4Z8Y9_BPTWO	Bacterial SH3 domain	NA
UHGV-1948339_45	Pfam	PF05257	CHAP domain	CHAP