UHGV-1952186

Genome information

Genome length 35,886 bps

CDS count 64

Completeness 99.90% (high-quality)

geNomad score 0.9714

Prediction confidence Confident

Genome information
Genome ID	UHGV-1952186
vOTU ID	vOTU-011593
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300008547\|Ga0111055_100017\|provirus_154832_190717
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9714
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.95
Jumbo phage	No

Genome content
Genome length	35,886 bps
GC content	27.88%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	94.40%
Average CDS length	533.48 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1952186_1	KOfam	K14059	int; integrase	NA
UHGV-1952186_1	PHROG	phrog_1	integrase	integration and excision
UHGV-1952186_1	UniRef90	UniRef90_A0A6N9L4Z3	Tyrosine-type recombinase/integrase	NA
UHGV-1952186_1	eggNOG-mapper	1002809.SSIL_1384	Phage integrase, N-terminal SAM-like domain	NA
UHGV-1952186_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1952186_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1952186_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1952186_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1952186_2	PHROG	phrog_888	NA	unknown function
UHGV-1952186_2	UniRef90	UniRef90_UPI00100AA80A	SHOCT domain-containing protein	NA
UHGV-1952186_2	eggNOG-mapper	445335.CBN_2977	Short C-terminal domain	NA
UHGV-1952186_2	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-1952186_3	PHROG	phrog_87	metallo-protease	other
UHGV-1952186_3	UniRef90	UniRef90_A0A3B8SNC0	Peptidase_M78 domain-containing protein	NA
UHGV-1952186_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1952186_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1952186_4	UniRef90	UniRef90_R5A425	DNA-binding helix-turn-helix protein	NA
UHGV-1952186_4	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1952186_4	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1952186_5	UniRef90	UniRef90_R5A161	Helix-turn-helix domain protein	NA
UHGV-1952186_5	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-1952186_5	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1952186_5	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-1952186_6	Structural annotation	PF11372	NA	NA
UHGV-1952186_8	Structural annotation	PF20385	NA	NA
UHGV-1952186_9	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-1952186_9	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1952186_9	UniRef90	UniRef90_UPI001C1FFC12	DnaD domain-containing protein	NA
UHGV-1952186_9	eggNOG-mapper	1423780.LOT_0351	DnaD domain protein	NA
UHGV-1952186_9	Pfam	PF19808	NA	DUF6291
UHGV-1952186_9	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-1952186_9	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-1952186_9	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1952186_9	Structural annotation	PF19808, PF07261, TIGR01446, COG3935	NA	NA
UHGV-1952186_12	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1952186_12	UniRef90	UniRef90_UPI001C7D2471	NA	NA
UHGV-1952186_12	eggNOG-mapper	1140001.I571_01714	NA	NA
UHGV-1952186_12	Pfam	PF06378	NA	DUF1071
UHGV-1952186_12	Structural annotation	PF06378	NA	NA
UHGV-1952186_13	PHROG	phrog_6244	NA	unknown function
UHGV-1952186_13	eggNOG-mapper	1158609.I586_00060	YqaJ-like viral recombinase domain	NA
UHGV-1952186_13	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1952186_15	PHROG	phrog_1389	NA	unknown function
UHGV-1952186_15	eggNOG-mapper	536233.CLO_1823	NA	NA
UHGV-1952186_15	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-1952186_19	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1952186_19	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1952186_19	UniRef90	UniRef90_A0A847E2S8	Single-stranded DNA-binding protein	NA
UHGV-1952186_19	eggNOG-mapper	1232430.CAVG010000115_gene1040	Single-strand binding protein family	NA
UHGV-1952186_19	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1952186_19	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1952186_19	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1952186_19	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1952186_19	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1952186_20	dbAPIS	APIS008	Alphafold2 predicted that Gad2 is an enzyme with a nucleotidyltransferase protein domain, suggesting that it inhibits Gabija via a mechanism of action different than Gad1.	NA
UHGV-1952186_21	PHROG	phrog_335	phosphatase	other
UHGV-1952186_21	UniRef90	UniRef90_UPI00067E78B7	macro domain-containing protein	NA
UHGV-1952186_21	eggNOG-mapper	986075.CathTA2_1074	Appr-1-p processing	NA
UHGV-1952186_21	PADLOC	darG	NA	NA
UHGV-1952186_21	COG	COG2110	O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domain	NA
UHGV-1952186_21	Structural annotation	PF20016, MF_01205, NF001666, COG2110	NA	NA
UHGV-1952186_22	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1952186_22	UniRef90	UniRef90_UPI0008242C1E	NUMOD4 domain-containing protein	NA
UHGV-1952186_22	eggNOG-mapper	1415774.U728_1689	HNH endonuclease	NA
UHGV-1952186_22	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-1952186_22	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-1952186_22	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1952186_22	Structural annotation	PF07463	NA	NA
UHGV-1952186_25	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-1952186_25	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-1952186_25	UniRef90	UniRef90_A0A7C6RQD7	RNA polymerase sigma factor	NA
UHGV-1952186_25	eggNOG-mapper	1033810.HLPCO_000272	Helix-turn-helix	NA
UHGV-1952186_25	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-1952186_25	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-1952186_25	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-1952186_25	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1952186_25	Structural annotation	PF04542, PF08281, MF_00962, NF004471, COG1191	NA	NA
UHGV-1952186_27	PHROG	phrog_20637	NA	unknown function
UHGV-1952186_27	UniRef90	UniRef90_UPI001BABC650	NA	NA
UHGV-1952186_27	eggNOG-mapper	1235796.C815_01680	NA	NA
UHGV-1952186_27	Pfam	PF18907	NA	DUF5662
UHGV-1952186_27	Structural annotation	PF18907	NA	NA
UHGV-1952186_30	PHROG	phrog_111	DNA methyltransferase	other
UHGV-1952186_30	UniRef90	UniRef90_A0A6N9P2A7	Adenine methyltransferase	NA
UHGV-1952186_30	eggNOG-mapper	1567011.A0A0A7RUD1_9VIRU	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-1952186_30	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-1952186_30	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-1952186_30	Structural annotation	PF05869, MF_03187, TIGR01712, COG2263	NA	NA
UHGV-1952186_35	PHROG	phrog_23660	NA	unknown function
UHGV-1952186_38	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1952186_38	Structural annotation	PF15456	NA	NA
UHGV-1952186_39	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1952186_39	UniRef90	UniRef90_A0A7H4KH39	Endodeoxyribonuclease RusA	NA
UHGV-1952186_39	eggNOG-mapper	945021.TEH_08430	Endodeoxyribonuclease RusA	NA
UHGV-1952186_39	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1952186_41	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-1952186_41	UniRef90	UniRef90_A0A7X5CDW9	Helix-turn-helix domain-containing protein	NA
UHGV-1952186_41	eggNOG-mapper	742733.HMPREF9469_01828	transposase activity	NA
UHGV-1952186_41	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-1952186_41	Structural annotation	PF07141	NA	NA
UHGV-1952186_42	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1952186_42	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1952186_42	UniRef90	UniRef90_A0A6N7QVH7	PBSX family phage terminase large subunit	NA
UHGV-1952186_42	eggNOG-mapper	1158601.I585_00701	Terminase RNAseH like domain	NA
UHGV-1952186_42	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1952186_42	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1952186_42	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1952186_42	COG	COG1783	Phage terminase large subunit	NA
UHGV-1952186_42	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1952186_43	PHROG	phrog_533	portal protein	head and packaging
UHGV-1952186_43	UniRef90	UniRef90_A0A6A7KAD1	Phage portal protein	NA
UHGV-1952186_43	eggNOG-mapper	986075.CathTA2_2459	portal protein	NA
UHGV-1952186_43	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1952186_44	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1952186_44	UniRef90	UniRef90_A0A3B8SRL4	CdiA_C domain-containing protein	NA
UHGV-1952186_44	eggNOG-mapper	525255.HMPREF0077_0390	Phage minor capsid protein 2	NA
UHGV-1952186_44	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1952186_44	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-1952186_44	COG	COG2369	NA	NA
UHGV-1952186_44	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-1952186_47	UniRef90	UniRef90_A0A4P8IA69	Phage capsid and scaffold	NA
UHGV-1952186_47	eggNOG-mapper	411471.SUBVAR_06993	NA	NA
UHGV-1952186_47	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1952186_48	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1952186_48	eggNOG-mapper	1449050.JNLE01000003_gene3888	NA	NA
UHGV-1952186_49	PHROG	phrog_3366	NA	unknown function
UHGV-1952186_49	eggNOG-mapper	642492.Clole_0823	NA	NA
UHGV-1952186_49	Pfam	PF20536	NA	DUF6751
UHGV-1952186_49	Structural annotation	PF20536, COG5614	NA	NA
UHGV-1952186_50	UniRef90	UniRef90_A0A174E6U4	Minor capsid	NA
UHGV-1952186_50	eggNOG-mapper	1304866.K413DRAFT_3041	NA	NA
UHGV-1952186_50	Structural annotation	PF11114	NA	NA
UHGV-1952186_51	PHROG	phrog_3266	tail completion	connector
UHGV-1952186_51	UniRef90	UniRef90_UPI0011DD0321	chloramphenicol resistance protein	NA
UHGV-1952186_51	eggNOG-mapper	1292035.H476_1010	NA	NA
UHGV-1952186_51	Structural annotation	PF12691	NA	NA
UHGV-1952186_52	PHROG	phrog_3099	NA	unknown function
UHGV-1952186_52	eggNOG-mapper	1304866.K413DRAFT_3043	NA	NA
UHGV-1952186_52	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1952186_53	Structural annotation	PF10666	NA	NA
UHGV-1952186_54	PHROG	phrog_706	NA	unknown function
UHGV-1952186_54	UniRef90	UniRef90_UPI000B35C11D	bacteriophage Gp15 family protein	NA
UHGV-1952186_54	eggNOG-mapper	1232449.BAHV02000010_gene2722	Bacteriophage Gp15 protein	NA
UHGV-1952186_54	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1952186_54	Structural annotation	PF06854	NA	NA
UHGV-1952186_55	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1952186_55	eggNOG-mapper	1160721.RBI_II00528	Phage tail tape measure protein, TP901 family	NA
UHGV-1952186_55	COG	COG1006	Multisubunit Na+/H+ antiporter, MnhC subunit	NA
UHGV-1952186_56	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-1952186_57	PHROG	phrog_6616	tail protein	tail
UHGV-1952186_57	UniRef90	UniRef90_R6H354	Carbohydrate binding domain protein	NA
UHGV-1952186_57	eggNOG-mapper	562743.JH976440_gene347	Phage minor structural protein	NA
UHGV-1952186_57	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-1952186_57	Structural annotation	PF05113, TIGR01665, NF041249, COG4379	NA	NA
UHGV-1952186_59	PHROG	phrog_9116	tail protein	tail
UHGV-1952186_59	UniRef90	UniRef90_A0A3D1PJI0	Collar domain-containing protein	NA
UHGV-1952186_59	eggNOG-mapper	694427.Palpr_1970	tail collar domain protein	NA
UHGV-1952186_59	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-1952186_59	COG	COG4675	Phage tail collar domain	NA
UHGV-1952186_60	PHROG	phrog_1863	NA	unknown function
UHGV-1952186_60	eggNOG-mapper	665956.HMPREF1032_03922	NA	NA
UHGV-1952186_61	PHROG	phrog_608	holin	lysis
UHGV-1952186_61	UniRef90	UniRef90_R6D7N9	Putative phage holin	NA
UHGV-1952186_61	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-1952186_61	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-1952186_62	KOfam	K07273	acm; lysozyme	NA
UHGV-1952186_62	PHROG	phrog_291	endolysin	lysis
UHGV-1952186_62	UniRef90	UniRef90_A0A7X8C3J7	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-1952186_62	eggNOG-mapper	1120978.KB894083_gene891	Pfam:Cpl-7	NA
UHGV-1952186_62	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1952186_62	Pfam	PF01476	LysM domain	LysM
UHGV-1952186_62	COG	COG1388	LysM repeat	NA
UHGV-1952186_62	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-1952186_63	UniRef90	UniRef90_A0A8E6DFC1	PBECR3 domain-containing protein	NA
UHGV-1952186_63	eggNOG-mapper	796940.HMPREF9628_02206	NA	NA
UHGV-1952186_63	Pfam	PF18812	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
UHGV-1952186_63	Structural annotation	PF18812, COG2929	NA	NA