UHGV-1952829

Genome information

Genome length 32,027 bps

CDS count 59

Completeness 99.46% (high-quality)

geNomad score 0.9778

Prediction confidence Confident

Genome information
Genome ID	UHGV-1952829
vOTU ID	vOTU-014267
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300008737\|Ga0113999_100252
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.46% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9778
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.46
Jumbo phage	No

Genome content
Genome length	32,027 bps
GC content	45.89%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	91.30%
Average CDS length	499.48 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1952829_1	PHROG	phrog_5070	NA	unknown function
UHGV-1952829_1	UniRef90	UniRef90_E6YME8	Phage-related protein	NA
UHGV-1952829_1	eggNOG-mapper	1094563.MCQ_00493	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-1952829_1	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-1952829_3	Structural annotation	PF13744, MF_00535, NF010465, COG3655	NA	NA
UHGV-1952829_7	UniRef90	UniRef90_UPI0018AA01F4	XRE family transcriptional regulator	NA
UHGV-1952829_7	eggNOG-mapper	428125.CLOLEP_02737	NA	NA
UHGV-1952829_7	Structural annotation	TIGR03070	NA	NA
UHGV-1952829_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1952829_8	UniRef90	UniRef90_A0A1C6GVI0	HTH cro/C1-type domain-containing protein	NA
UHGV-1952829_8	eggNOG-mapper	1507.HMPREF0262_00424	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1952829_8	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1952829_8	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1952829_8	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-1952829_9	PHROG	phrog_87	metallo-protease	other
UHGV-1952829_9	UniRef90	UniRef90_UPI001899699D	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-1952829_9	eggNOG-mapper	1007096.BAGW01000011_gene2354	IrrE N-terminal-like domain	NA
UHGV-1952829_9	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1952829_9	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1952829_9	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1952829_11	PHROG	phrog_7115	NA	unknown function
UHGV-1952829_11	UniRef90	UniRef90_R6N893	NA	NA
UHGV-1952829_11	eggNOG-mapper	1410668.JNKC01000008_gene2722	Bacterial PH domain	NA
UHGV-1952829_11	Pfam	PF08000	Bacterial PH domain	bPH_1
UHGV-1952829_11	Structural annotation	PF08000, MF_00437	NA	NA
UHGV-1952829_12	KOfam	K14059	int; integrase	NA
UHGV-1952829_12	PHROG	phrog_1	integrase	integration and excision
UHGV-1952829_12	UniRef90	UniRef90_A0A328U998	Site-specific integrase	NA
UHGV-1952829_12	eggNOG-mapper	887325.HMPREF0381_0346	Phage integrase, N-terminal SAM-like domain	NA
UHGV-1952829_12	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1952829_12	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1952829_12	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1952829_12	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-1952829_14	eggNOG-mapper	1232443.BAIA02000106_gene3111	NA	NA
UHGV-1952829_15	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1952829_15	PHROG	phrog_7698	endolysin	lysis
UHGV-1952829_15	UniRef90	UniRef90_A0A1C6GY80	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1952829_15	eggNOG-mapper	293826.Amet_2548	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1952829_15	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1952829_15	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-1952829_15	Structural annotation	PF01510, PF01476, PF15591, MF_02014, MF_04111, MF_01354, NF008758, NF010723, TIGR00405, COG3023, COG5004, COG2139	NA	NA
UHGV-1952829_18	PHROG	phrog_3971	NA	unknown function
UHGV-1952829_18	eggNOG-mapper	1003200.AXXA_07630	NA	NA
UHGV-1952829_19	eggNOG-mapper	428125.CLOLEP_00173	NA	NA
UHGV-1952829_19	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-1952829_20	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-1952829_20	UniRef90	UniRef90_UPI001C0A6D30	phage tail tape measure protein	NA
UHGV-1952829_20	eggNOG-mapper	428125.CLOLEP_01785	tail tape measure protein, TP901	NA
UHGV-1952829_20	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1952829_20	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1952829_20	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1952829_21	PHROG	phrog_706	NA	unknown function
UHGV-1952829_21	UniRef90	UniRef90_A0A1C6FWZ1	Bacteriophage Gp15 protein	NA
UHGV-1952829_21	eggNOG-mapper	428125.CLOLEP_00176	Bacteriophage Gp15 protein	NA
UHGV-1952829_21	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1952829_21	Structural annotation	PF06854	NA	NA
UHGV-1952829_22	UniRef90	UniRef90_A0A143ZVS5	Cse1 domain-containing protein	NA
UHGV-1952829_22	Structural annotation	PF10666	NA	NA
UHGV-1952829_23	PHROG	phrog_820	major tail protein	tail
UHGV-1952829_23	UniRef90	UniRef90_A0A3A6EPU8	S-l_SbsC_C domain-containing protein	NA
UHGV-1952829_23	eggNOG-mapper	428125.CLOLEP_00178	Belongs to the glycosyl hydrolase family 6	NA
UHGV-1952829_23	COG	COG5492	NA	NA
UHGV-1952829_23	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1952829_24	PHROG	phrog_913	minor head protein	head and packaging
UHGV-1952829_24	Structural annotation	PF12691	NA	NA
UHGV-1952829_25	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1952829_25	UniRef90	UniRef90_UPI000C857E2C	minor capsid protein	NA
UHGV-1952829_25	eggNOG-mapper	428125.CLOLEP_00180	Minor capsid protein	NA
UHGV-1952829_25	Structural annotation	PF11114	NA	NA
UHGV-1952829_26	UniRef90	UniRef90_UPI001D06E7F2	minor capsid protein	NA
UHGV-1952829_26	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-1952829_27	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1952829_27	UniRef90	UniRef90_F5L4I5	Protein gp8	NA
UHGV-1952829_27	eggNOG-mapper	986075.CathTA2_0698	NA	NA
UHGV-1952829_28	PHROG	phrog_422	major head protein	head and packaging
UHGV-1952829_28	UniRef90	UniRef90_A0A316T938	S-l_SbsC_C domain-containing protein	NA
UHGV-1952829_28	eggNOG-mapper	428125.CLOLEP_00183	COG NOG28280 non supervised orthologous group	NA
UHGV-1952829_28	Structural annotation	PF19821, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1952829_30	Structural annotation	PF14530, MF_01441, NF009990, COG0783	NA	NA
UHGV-1952829_32	PHROG	phrog_3675	NA	unknown function
UHGV-1952829_32	UniRef90	UniRef90_R6AGU8	YjcQ protein	NA
UHGV-1952829_32	eggNOG-mapper	1321784.HMPREF1987_01070	YjcQ protein	NA
UHGV-1952829_32	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-1952829_32	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-1952829_33	PHROG	phrog_34144	NA	unknown function
UHGV-1952829_33	eggNOG-mapper	1118057.CAGX01000020_gene1617	NA	NA
UHGV-1952829_33	Structural annotation	PF20111	NA	NA
UHGV-1952829_34	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1952829_34	UniRef90	UniRef90_A7VTB0	Phage minor capsid protein 2	NA
UHGV-1952829_34	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-1952829_34	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1952829_34	COG	COG2369	NA	NA
UHGV-1952829_34	Structural annotation	PF06152	NA	NA
UHGV-1952829_35	PHROG	phrog_533	portal protein	head and packaging
UHGV-1952829_35	UniRef90	UniRef90_A0A328UBS0	Portal protein	NA
UHGV-1952829_35	eggNOG-mapper	428125.CLOLEP_01803	NA	NA
UHGV-1952829_35	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1952829_35	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-1952829_35	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1952829_36	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1952829_36	PHROG	phrog_29775	NA	unknown function
UHGV-1952829_36	UniRef90	UniRef90_A0A1C6FVY4	Phage terminase, large subunit, PBSX family	NA
UHGV-1952829_36	eggNOG-mapper	428125.CLOLEP_01804	Phage terminase, large subunit, PBSX family	NA
UHGV-1952829_36	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1952829_36	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1952829_36	COG	COG1783	Phage terminase large subunit	NA
UHGV-1952829_36	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1952829_37	UniRef90	UniRef90_UPI0018A8F249	helix-turn-helix domain containing protein	NA
UHGV-1952829_37	eggNOG-mapper	428125.CLOLEP_01805	NA	NA
UHGV-1952829_39	Structural annotation	PF04606	NA	NA
UHGV-1952829_40	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1952829_40	UniRef90	UniRef90_UPI00189CA0E1	RNA polymerase subunit sigma-24	NA
UHGV-1952829_40	eggNOG-mapper	1540257.JQMW01000004_gene433	NA	NA
UHGV-1952829_40	Structural annotation	PF07374	NA	NA
UHGV-1952829_41	UniRef90	UniRef90_A0A328UAE5	HTH cro/C1-type domain-containing protein	NA
UHGV-1952829_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1952829_41	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-1952829_41	Structural annotation	PF12844, MF_00535, TIGR03070, COG1476	NA	NA
UHGV-1952829_45	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-1952829_45	eggNOG-mapper	411467.BACCAP_03038	COG NOG12663 non supervised orthologous group	NA
UHGV-1952829_45	Structural annotation	PF11124, MF_02210, NF040502, COG3818	NA	NA
UHGV-1952829_47	PHROG	phrog_111	DNA methyltransferase	other
UHGV-1952829_47	UniRef90	UniRef90_A0A1C6GCR8	Phage N-6-adenine-methyltransferase	NA
UHGV-1952829_47	eggNOG-mapper	445972.ANACOL_03344	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-1952829_47	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-1952829_47	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-1952829_47	Structural annotation	PF05869, TIGR01712, COG0338	NA	NA
UHGV-1952829_49	PHROG	phrog_13890	NA	unknown function
UHGV-1952829_49	UniRef90	UniRef90_A0A6N9P941	Antitoxin	NA
UHGV-1952829_49	eggNOG-mapper	1507.HMPREF0262_00298	NA	NA
UHGV-1952829_49	Pfam	PF08681	NA	DUF1778
UHGV-1952829_50	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1952829_50	UniRef90	UniRef90_A0A7V6W6S0	NA	NA
UHGV-1952829_50	eggNOG-mapper	522373.Smlt1935	NA	NA
UHGV-1952829_50	Pfam	PF06356	NA	DUF1064
UHGV-1952829_50	Structural annotation	PF06356, MF_04160, NF033179	NA	NA
UHGV-1952829_51	PHROG	phrog_15768	NA	unknown function
UHGV-1952829_51	UniRef90	UniRef90_A0A416HMA1	NA	NA
UHGV-1952829_51	eggNOG-mapper	1095750.HMPREF9970_1674	NA	NA
UHGV-1952829_51	Structural annotation	PF01978, MF_01819, NF041413, COG0735	NA	NA
UHGV-1952829_52	Structural annotation	PF21715	NA	NA
UHGV-1952829_53	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1952829_53	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1952829_53	UniRef90	UniRef90_A0A328UCX8	Single-stranded DNA-binding protein	NA
UHGV-1952829_53	eggNOG-mapper	1105031.HMPREF1141_2832	Single-stranded DNA-binding protein	NA
UHGV-1952829_53	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1952829_53	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1952829_53	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1952829_53	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1952829_53	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1952829_54	PHROG	phrog_1389	NA	unknown function
UHGV-1952829_54	eggNOG-mapper	883156.HMPREF9282_01223	NA	NA
UHGV-1952829_54	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-1952829_55	PHROG	phrog_7566	NA	unknown function
UHGV-1952829_55	eggNOG-mapper	508419.F8J187_9CAUD	NA	NA
UHGV-1952829_56	PHROG	phrog_14970	NA	unknown function
UHGV-1952829_56	UniRef90	UniRef90_UPI00123F00F5	Rad52/Rad22 family DNA repair protein	NA
UHGV-1952829_56	eggNOG-mapper	411468.CLOSCI_00315	double-strand break repair protein	NA
UHGV-1952829_56	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-1952829_56	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-1952829_56	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-1952829_59	PHROG	phrog_20532	NA	unknown function
UHGV-1952829_59	eggNOG-mapper	1453496.AT03_13460	Homologous to orf229 gp Streptococcus thermophilus bacteriophage Sfi19 gi 9632919 ref NP_049948.1	NA
UHGV-1952829_59	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-1952829_59	Structural annotation	PF00132	NA	NA