UHGV-1953018

Genome information

Genome length 35,301 bps

CDS count 53

Completeness 99.53% (high-quality)

geNomad score 0.9713

Prediction confidence Confident

Genome information
Genome ID	UHGV-1953018
vOTU ID	vOTU-007464
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300008512\|Ga0115181_100097\|provirus_60727_100424
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.53% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9713
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.04
Jumbo phage	No

Genome content
Genome length	35,301 bps
GC content	40.28%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	91.25%
Average CDS length	611.26 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1953018_1	KOfam	K08678	UXS1, uxs; UDP-glucuronate decarboxylase [EC:4.1.1.35]	NA
UHGV-1953018_1	PHROG	phrog_540	nucleotide-sugar epimerase	DNA, RNA and nucleotide metabolism
UHGV-1953018_1	UniRef90	UniRef90_A0A2N0UQV5	dTDP-glucose 4,6-dehydratase	NA
UHGV-1953018_1	eggNOG-mapper	877411.JMMA01000002_gene2599	epimerase dehydratase	NA
UHGV-1953018_1	Pfam	PF01370	NAD dependent epimerase/dehydratase family	Epimerase
UHGV-1953018_1	COG	COG0451	Nucleoside-diphosphate-sugar epimerase	NA
UHGV-1953018_1	Structural annotation	PF16363, MF_01166, TIGR01181, COG0451	NA	NA
UHGV-1953018_2	KOfam	K07271	licD; lipopolysaccharide cholinephosphotransferase [EC:2.7.8.-]	NA
UHGV-1953018_2	UniRef90	UniRef90_A0A3D3D7N5	Epimerase domain-containing protein	NA
UHGV-1953018_2	eggNOG-mapper	697329.Rumal_2992	LicD family	NA
UHGV-1953018_2	Pfam	PF01370	NAD dependent epimerase/dehydratase family	Epimerase
UHGV-1953018_2	Pfam	PF04991	LicD family	LicD
UHGV-1953018_2	COG	COG3475	Phosphorylcholine metabolism protein LicD	NA
UHGV-1953018_3	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1953018_3	PHROG	phrog_20388	endolysin	lysis
UHGV-1953018_3	UniRef90	UniRef90_A0A374N1L8	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1953018_3	eggNOG-mapper	1203606.HMPREF1526_00253	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1953018_3	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1953018_3	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-1953018_3	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1953018_3	Structural annotation	PF01510, PF01476, PF15591, MF_02014, MF_04111, MF_01354, NF008758, NF010723, TIGR00405, COG3023, COG5004, COG2139	NA	NA
UHGV-1953018_4	PHROG	phrog_774	NA	unknown function
UHGV-1953018_4	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-1953018_5	PHROG	phrog_199	holin	lysis
UHGV-1953018_5	UniRef90	UniRef90_A0A2N0ULW7	Holin	NA
UHGV-1953018_5	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-1953018_5	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1953018_5	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1953018_5	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1953018_5	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1953018_7	UniRef90	UniRef90_A0A1C6HHE5	BppU_N domain-containing protein	NA
UHGV-1953018_7	Structural annotation	PF08931	NA	NA
UHGV-1953018_8	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-1953018_9	PHROG	phrog_1194	NA	unknown function
UHGV-1953018_9	UniRef90	UniRef90_A0A8D9PDT1	YolD-like protein	NA
UHGV-1953018_9	eggNOG-mapper	1304866.K413DRAFT_3047	NA	NA
UHGV-1953018_9	Pfam	PF20458	NA	DUF6711
UHGV-1953018_9	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-1953018_10	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-1953018_10	UniRef90	UniRef90_A0A2N0UYY1	Phage-related protein	NA
UHGV-1953018_10	eggNOG-mapper	1160721.RBI_II00528	Phage tail tape measure protein, TP901 family	NA
UHGV-1953018_10	COG	COG1006	Multisubunit Na+/H+ antiporter, MnhC subunit	NA
UHGV-1953018_10	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-1953018_11	PHROG	phrog_8355	NA	unknown function
UHGV-1953018_11	UniRef90	UniRef90_UPI001C0B4BD8	Gp15 family bacteriophage protein	NA
UHGV-1953018_11	eggNOG-mapper	1415775.U729_2613	NA	NA
UHGV-1953018_12	PHROG	phrog_8300	NA	unknown function
UHGV-1953018_12	eggNOG-mapper	483218.BACPEC_01148	NA	NA
UHGV-1953018_12	Structural annotation	PF06854	NA	NA
UHGV-1953018_13	PHROG	phrog_820	major tail protein	tail
UHGV-1953018_13	eggNOG-mapper	1282664.H354_06691	NA	NA
UHGV-1953018_13	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1953018_14	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-1953018_14	UniRef90	UniRef90_UPI001D0627B3	minor capsid protein	NA
UHGV-1953018_14	eggNOG-mapper	1123263.AUKY01000051_gene1075	NA	NA
UHGV-1953018_14	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-1953018_14	Structural annotation	PF12691, COG5003	NA	NA
UHGV-1953018_15	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1953018_15	eggNOG-mapper	483218.BACPEC_01151	NA	NA
UHGV-1953018_16	PHROG	phrog_8710	NA	unknown function
UHGV-1953018_16	eggNOG-mapper	33035.JPJF01000093_gene2249	NA	NA
UHGV-1953018_16	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-1953018_17	eggNOG-mapper	483218.BACPEC_01153	NA	NA
UHGV-1953018_18	PHROG	phrog_422	major head protein	head and packaging
UHGV-1953018_18	UniRef90	UniRef90_UPI001C03381A	phage capsid protein	NA
UHGV-1953018_18	eggNOG-mapper	445972.ANACOL_01845	NA	NA
UHGV-1953018_18	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1953018_19	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-1953018_19	eggNOG-mapper	1304866.K413DRAFT_0806	NA	NA
UHGV-1953018_20	PHROG	phrog_2616	NA	unknown function
UHGV-1953018_20	Structural annotation	PF01281	NA	NA
UHGV-1953018_21	PHROG	phrog_20195	NA	unknown function
UHGV-1953018_22	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1953018_22	UniRef90	UniRef90_A0A373KU77	Minor capsid protein	NA
UHGV-1953018_22	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-1953018_22	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1953018_22	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-1953018_22	Structural annotation	PF06152	NA	NA
UHGV-1953018_23	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1953018_23	UniRef90	UniRef90_UPI000705333A	NUMOD4 domain-containing protein	NA
UHGV-1953018_23	eggNOG-mapper	357276.EL88_11520	HNH endonuclease domain protein	NA
UHGV-1953018_23	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-1953018_23	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-1953018_23	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1953018_23	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-1953018_23	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-1953018_25	UniRef90	UniRef90_A0A373KVZ7	CopG family transcriptional regulator	NA
UHGV-1953018_25	Structural annotation	PF01402, NF041793, COG4453	NA	NA
UHGV-1953018_26	PHROG	phrog_533	portal protein	head and packaging
UHGV-1953018_26	UniRef90	UniRef90_A0A3D0XB31	Capsid protein	NA
UHGV-1953018_26	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-1953018_26	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1953018_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1953018_27	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1953018_27	UniRef90	UniRef90_A0A374N1S8	Terminase	NA
UHGV-1953018_27	eggNOG-mapper	1282664.H354_06621	Phage terminase, large subunit, PBSX family	NA
UHGV-1953018_27	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1953018_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-1953018_27	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1953018_28	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1953018_28	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1953018_28	UniRef90	UniRef90_A0A2N0UXP4	Terminase small subunit	NA
UHGV-1953018_28	eggNOG-mapper	1160721.RBI_II00483	DNA packaging	NA
UHGV-1953018_28	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1953018_28	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1953018_28	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1953018_29	PHROG	phrog_9479	NA	unknown function
UHGV-1953018_29	UniRef90	UniRef90_A0A2N0UXN8	Ntox24 domain-containing protein	NA
UHGV-1953018_29	Pfam	PF15529	Bacterial toxin 24	Ntox24
UHGV-1953018_29	Structural annotation	PF15529	NA	NA
UHGV-1953018_30	PHROG	phrog_8680	NA	unknown function
UHGV-1953018_30	UniRef90	UniRef90_A0A373KTP5	NA	NA
UHGV-1953018_30	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-1953018_30	Pfam	PF14386	NA	DUF4417
UHGV-1953018_30	Structural annotation	PF14386	NA	NA
UHGV-1953018_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1953018_31	UniRef90	UniRef90_A0A2N0UXQ6	NA	NA
UHGV-1953018_31	eggNOG-mapper	1401067.HMPREF0872_06835	NA	NA
UHGV-1953018_31	Pfam	PF07374	NA	DUF1492
UHGV-1953018_31	Structural annotation	PF07374, MF_00674, TIGR01636, COG2739	NA	NA
UHGV-1953018_34	Structural annotation	PF05129	NA	NA
UHGV-1953018_36	PHROG	phrog_824	NA	unknown function
UHGV-1953018_36	UniRef90	UniRef90_A0A374MXE9	VRR-NUC domain-containing protein	NA
UHGV-1953018_36	eggNOG-mapper	1235792.C808_00622	VRR_NUC	NA
UHGV-1953018_36	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-1953018_36	Structural annotation	PF08774	NA	NA
UHGV-1953018_37	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1953018_37	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1953018_37	UniRef90	UniRef90_A0A374MYR7	IstB_IS21 domain-containing protein	NA
UHGV-1953018_37	eggNOG-mapper	1507.HMPREF0262_00302	Bacterial dnaA protein	NA
UHGV-1953018_37	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-1953018_37	COG	COG1484	DNA replication protein DnaC	NA
UHGV-1953018_37	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-1953018_38	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1953018_38	UniRef90	UniRef90_A0A374NA85	NA	NA
UHGV-1953018_38	eggNOG-mapper	1235790.C805_00030	NA	NA
UHGV-1953018_38	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-1953018_38	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1953018_38	Structural annotation	PF14297	NA	NA
UHGV-1953018_39	PHROG	phrog_398	NA	unknown function
UHGV-1953018_39	UniRef90	UniRef90_UPI000C7B20DA	putative HNHc nuclease	NA
UHGV-1953018_39	eggNOG-mapper	293826.Amet_2584	Putative HNHc nuclease	NA
UHGV-1953018_39	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-1953018_39	Structural annotation	PF16784	NA	NA
UHGV-1953018_40	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-1953018_40	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1953018_40	UniRef90	UniRef90_A0A373XYI8	MBL fold metallo-hydrolase	NA
UHGV-1953018_40	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-1953018_40	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-1953018_40	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1953018_40	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-1953018_41	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1953018_41	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1953018_41	UniRef90	UniRef90_A0A374N9W0	Recombinase	NA
UHGV-1953018_41	eggNOG-mapper	428127.EUBDOL_01509	RecT family	NA
UHGV-1953018_41	Pfam	PF03837	RecT family	RecT
UHGV-1953018_41	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1953018_41	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1953018_41	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-1953018_42	PHROG	phrog_674	NA	unknown function
UHGV-1953018_42	UniRef90	UniRef90_A0A374N9T8	NA	NA
UHGV-1953018_42	eggNOG-mapper	1408437.JNJN01000039_gene373	NA	NA
UHGV-1953018_42	Pfam	PF07083	NA	DUF1351
UHGV-1953018_42	Structural annotation	PF07083	NA	NA
UHGV-1953018_43	Structural annotation	PF04570, COG2075	NA	NA
UHGV-1953018_46	eggNOG-mapper	1235835.C814_03153	NA	NA
UHGV-1953018_46	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-1953018_48	PHROG	phrog_3882	NA	unknown function
UHGV-1953018_51	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-1953018_51	UniRef90	UniRef90_UPI001C11D88B	helix-turn-helix transcriptional regulator	NA
UHGV-1953018_51	eggNOG-mapper	999411.HMPREF1092_00882	Helix-turn-helix	NA
UHGV-1953018_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1953018_51	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-1953018_52	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1953018_52	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1953018_52	UniRef90	UniRef90_UPI0015F84BF4	XRE family transcriptional regulator	NA
UHGV-1953018_52	eggNOG-mapper	246199.CUS_5911	NA	NA
UHGV-1953018_52	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1953018_52	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1953018_52	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1953018_52	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, TIGR03070, COG1974, COG1476	NA	NA
UHGV-1953018_53	Structural annotation	PF20505, MF_00194, NF001462, COG2974	NA	NA