UHGV-1953887

Genome information

Genome length 37,769 bps

CDS count 52

Completeness 82.38% (medium-quality)

geNomad score 0.9754

Prediction confidence Confident

Genome information
Genome ID	UHGV-1953887
vOTU ID	vOTU-021307
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300008744\|Ga0114025_1000595
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.38% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9754
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.52
Jumbo phage	No

Genome content
Genome length	37,769 bps
GC content	48.28%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	90.84%
Average CDS length	662.48 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1953887_2	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1953887_2	UniRef90	UniRef90_A0A810QA10	Terminase	NA
UHGV-1953887_2	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-1953887_2	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-1953887_2	COG	COG5410	NA	NA
UHGV-1953887_2	Structural annotation	PF17289, PF04466, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-1953887_4	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-1953887_4	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-1953887_4	UniRef90	UniRef90_A0A3D0LYX8	Resolvase	NA
UHGV-1953887_4	eggNOG-mapper	641107.CDLVIII_3188	Resolvase, N terminal domain	NA
UHGV-1953887_4	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1953887_4	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1953887_4	Structural annotation	PF00239, PF02796, MF_00489, NF009949, COG1961	NA	NA
UHGV-1953887_5	UniRef90	UniRef90_A0A417DZ16	HTH cro/C1-type domain-containing protein	NA
UHGV-1953887_5	Structural annotation	PF20075, TIGR02612, COG1396	NA	NA
UHGV-1953887_7	PHROG	phrog_6244	NA	unknown function
UHGV-1953887_7	eggNOG-mapper	1354300.AUQY01000005_gene215	NA	NA
UHGV-1953887_9	UniRef90	UniRef90_A0A5P8D6D5	Sequence-specific DNA binding RNA polymerase II transcription factor	NA
UHGV-1953887_10	PHROG	phrog_4264	NA	unknown function
UHGV-1953887_10	eggNOG-mapper	442493.A8E2H1_BPPHE	NA	NA
UHGV-1953887_12	eggNOG-mapper	1415774.U728_1676	DNA-packaging protein gp3	NA
UHGV-1953887_13	PHROG	phrog_864	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-1953887_13	UniRef90	UniRef90_A0A1M7S6C1	Putative DNA primase/helicase	NA
UHGV-1953887_13	eggNOG-mapper	1232453.BAIF02000019_gene3935	Phage plasmid primase, P4 family domain protein	NA
UHGV-1953887_13	Pfam	PF19263	NA	DUF5906
UHGV-1953887_13	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-1953887_13	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-1953887_13	Structural annotation	PF05272, PF02257, NF005477, COG3378	NA	NA
UHGV-1953887_14	KOfam	K07450	K07450; putative resolvase	NA
UHGV-1953887_14	UniRef90	UniRef90_UPI00195D79B5	helix-turn-helix domain-containing protein	NA
UHGV-1953887_14	eggNOG-mapper	748671.LCRIS_00589	Resolvase, N-terminal	NA
UHGV-1953887_14	Pfam	PF13411	MerR HTH family regulatory protein	MerR_1
UHGV-1953887_14	COG	COG2452	Predicted site-specific integrase-resolvase	NA
UHGV-1953887_18	KOfam	K03465	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	NA
UHGV-1953887_18	PHROG	phrog_85	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-1953887_18	UniRef90	UniRef90_R6MZ76	Flavin-dependent thymidylate synthase	NA
UHGV-1953887_18	eggNOG-mapper	665956.HMPREF1032_03153	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	NA
UHGV-1953887_18	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-1953887_18	NCBIFam	TIGR02170.1	FAD-dependent thymidylate synthase	NA
UHGV-1953887_18	COG	COG1351	Thymidylate synthase ThyX, FAD-dependent family	NA
UHGV-1953887_18	HAMAP	MF_01408	Flavin-dependent thymidylate synthase [thyX]	NA
UHGV-1953887_18	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-1953887_19	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1953887_19	UniRef90	UniRef90_R6GUW7	AP2 domain-containing protein	NA
UHGV-1953887_19	eggNOG-mapper	742767.HMPREF9456_02044	NA	NA
UHGV-1953887_19	Structural annotation	PF17375	NA	NA
UHGV-1953887_20	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-1953887_20	UniRef90	UniRef90_R6P545	Primase C terminal 1 (PriCT-1)./Bifunctional DNA primase/polymerase N-terminal	NA
UHGV-1953887_20	eggNOG-mapper	1121866.AUGK01000003_gene1409	Phage plasmid primase, P4 family domain protein	NA
UHGV-1953887_20	Pfam	PF08708	Primase C terminal 1 (PriCT-1)	PriCT_1
UHGV-1953887_20	COG	COG4983	Primase-polymerase (Primpol) domain protein	NA
UHGV-1953887_20	Structural annotation	PF08708, PF09250, COG4983	NA	NA
UHGV-1953887_21	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-1953887_24	KOfam	K03698	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	NA
UHGV-1953887_24	PHROG	phrog_28876	metal-dependent phosphohydrolase	other
UHGV-1953887_24	UniRef90	UniRef90_A0A1C6EYG8	Predicted HD-superfamily hydrolase	NA
UHGV-1953887_24	eggNOG-mapper	1219626.HMPREF1639_07345	metal-dependent phosphohydrolase, HD sub domain	NA
UHGV-1953887_24	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-1953887_24	Structural annotation	PF01966, MF_01427, NF010007, COG3481	NA	NA
UHGV-1953887_25	PHROG	phrog_801	endolysin; inhibits RNA polymerase	lysis
UHGV-1953887_25	UniRef90	UniRef90_R6MZ55	NA	NA
UHGV-1953887_25	eggNOG-mapper	1297570.MESS4_510075	NA	NA
UHGV-1953887_25	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-1953887_25	Structural annotation	PF18909	NA	NA
UHGV-1953887_26	Structural annotation	PF05037	NA	NA
UHGV-1953887_27	AcrCatalog	cluster_73853	NA	NA
UHGV-1953887_30	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1953887_30	UniRef90	UniRef90_R6N9M4	Phage-related protein predicted endonuclease	NA
UHGV-1953887_30	eggNOG-mapper	1219626.HMPREF1639_07320	YqaJ viral recombinase family	NA
UHGV-1953887_30	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1953887_30	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1953887_30	Structural annotation	PF09588, TIGR03033, COG5377	NA	NA
UHGV-1953887_31	KOfam	K02319	pol; DNA polymerase, archaea type [EC:2.7.7.7]	NA
UHGV-1953887_31	PHROG	phrog_1252	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1953887_31	UniRef90	UniRef90_A0A849CVC4	DNA polymerase elongation subunit (Family B)	NA
UHGV-1953887_31	eggNOG-mapper	1121866.AUGK01000003_gene1403	DNA replication proofreading	NA
UHGV-1953887_31	Pfam	PF04404	ERF superfamily	ERF
UHGV-1953887_31	COG	COG0417	DNA polymerase B elongation subunit	NA
UHGV-1953887_31	Structural annotation	PF04404, PF08490, MF_04100, TIGR00592, COG0417	NA	NA
UHGV-1953887_32	KOfam	K18959	uvsW; ATP-dependent DNA helicase UvsW [EC:5.6.2.4]	NA
UHGV-1953887_32	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1953887_32	UniRef90	UniRef90_A0A849CVE0	DEAD/DEAH box helicase family protein	NA
UHGV-1953887_32	eggNOG-mapper	1449050.JNLE01000003_gene3908	Type III restriction protein res subunit	NA
UHGV-1953887_32	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-1953887_32	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-1953887_32	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1953887_32	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-1953887_32	Structural annotation	PF04851, PF16203, MF_01489, TIGR00603, COG1061	NA	NA
UHGV-1953887_33	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1953887_33	UniRef90	UniRef90_D7GXC2	Archaeal holliday junction resolvase (Hjc)	NA
UHGV-1953887_33	eggNOG-mapper	1232453.BAIF02000010_gene3342	Recombination protein U	NA
UHGV-1953887_33	Structural annotation	PF03838, MF_01490, NF002581, COG1591	NA	NA
UHGV-1953887_34	KOfam	K08309	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	NA
UHGV-1953887_34	PHROG	phrog_19349	NA	unknown function
UHGV-1953887_34	UniRef90	UniRef90_R6N9M0	Soluble lytic murein transglycosylase and related regulatory proteins (Some contain LysM/invasin domains)	NA
UHGV-1953887_34	eggNOG-mapper	742740.HMPREF9474_02375	lytic transglycosylase activity	NA
UHGV-1953887_34	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-1953887_34	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-1953887_34	Structural annotation	PF01464, MF_01616, NF011856, COG0741	NA	NA
UHGV-1953887_36	UniRef90	UniRef90_A0A1C6L0N4	HTH cro/C1-type domain-containing protein	NA
UHGV-1953887_36	Structural annotation	PF08667, NF041951, COG3655	NA	NA
UHGV-1953887_37	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1953887_37	PHROG	phrog_95	integrase	integration and excision
UHGV-1953887_37	UniRef90	UniRef90_R6N1X8	DNA integration/recombination protein	NA
UHGV-1953887_37	eggNOG-mapper	445972.ANACOL_03320	NA	NA
UHGV-1953887_37	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1953887_37	Pfam	PF07508	Recombinase	Recombinase
UHGV-1953887_37	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1953887_37	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1953887_37	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-1953887_40	UniRef90	UniRef90_H1CEM5	SH3b domain-containing protein	NA
UHGV-1953887_40	eggNOG-mapper	1235797.C816_02842	mannosyl-glycoprotein	NA
UHGV-1953887_40	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-1953887_40	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1953887_40	Structural annotation	PF05382, NF033743	NA	NA
UHGV-1953887_41	PHROG	phrog_13256	NA	unknown function
UHGV-1953887_41	eggNOG-mapper	1226322.HMPREF1545_00166	NA	NA
UHGV-1953887_42	PHROG	phrog_1863	NA	unknown function
UHGV-1953887_42	eggNOG-mapper	748224.HMPREF9436_00408	NA	NA
UHGV-1953887_43	eggNOG-mapper	1235797.C816_04174	NA	NA
UHGV-1953887_43	Structural annotation	PF14600	NA	NA
UHGV-1953887_45	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-1953887_45	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-1953887_45	UniRef90	UniRef90_H1CEN0	Reverse transcriptase domain-containing protein	NA
UHGV-1953887_45	eggNOG-mapper	521003.COLINT_02359	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-1953887_45	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-1953887_45	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-1953887_45	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-1953887_46	PHROG	phrog_30516	NA	unknown function
UHGV-1953887_46	Structural annotation	PF05635, NF008911	NA	NA
UHGV-1953887_47	PHROG	phrog_37900	NA	unknown function
UHGV-1953887_47	UniRef90	UniRef90_H1CEN2	NA	NA
UHGV-1953887_47	eggNOG-mapper	1519439.JPJG01000060_gene1894	NA	NA
UHGV-1953887_47	Pfam	PF19789	NA	DUF6273
UHGV-1953887_47	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-1953887_47	Structural annotation	PF19789, PF14686, TIGR04183, COG2512	NA	NA
UHGV-1953887_48	PHROG	phrog_18725	NA	unknown function
UHGV-1953887_48	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-1953887_49	PHROG	phrog_13879	NA	unknown function
UHGV-1953887_49	eggNOG-mapper	665956.HMPREF1032_03630	NA	NA
UHGV-1953887_49	Structural annotation	PF03256, PF16466, PF13550, MF_00813, NF033848, COG3500	NA	NA
UHGV-1953887_50	PHROG	phrog_1194	NA	unknown function
UHGV-1953887_50	eggNOG-mapper	742740.HMPREF9474_03515	NA	NA
UHGV-1953887_50	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1953887_51	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1953887_51	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-1953887_51	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-1953887_52	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA