UHGV-1954056

Genome information

Genome length 35,407 bps

CDS count 57

Completeness 92.42% (high-quality)

geNomad score 0.9742

Prediction confidence Confident

Genome information
Genome ID	UHGV-1954056
vOTU ID	vOTU-013916
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300008282\|Ga0114156_1000139\|provirus_24527_59933
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.42% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9742
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	68.09
Jumbo phage	No

Genome content
Genome length	35,407 bps
GC content	40.59%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	94.98%
Average CDS length	593.63 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1954056_1	KOfam	K07273	acm; lysozyme	NA
UHGV-1954056_1	PHROG	phrog_6745	endolysin	lysis
UHGV-1954056_1	UniRef90	UniRef90_A0A5M8C3B4	NA	NA
UHGV-1954056_1	eggNOG-mapper	665950.HMPREF1025_02005	hydrolase, family 25	NA
UHGV-1954056_1	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1954056_1	Pfam	PF01476	LysM domain	LysM
UHGV-1954056_1	COG	COG1388	LysM repeat	NA
UHGV-1954056_1	Structural annotation	PF01183, PF01476, TIGR02899, NF007360, COG3757, COG1388	NA	NA
UHGV-1954056_2	PHROG	phrog_199	holin	lysis
UHGV-1954056_2	UniRef90	UniRef90_A0A417W6L6	Holin	NA
UHGV-1954056_2	eggNOG-mapper	742740.HMPREF9474_02333	Bacteriophage holin family	NA
UHGV-1954056_2	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1954056_2	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1954056_2	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1954056_2	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1954056_3	PHROG	phrog_5302	tail protein	tail
UHGV-1954056_3	UniRef90	UniRef90_A0A345BPB9	Lectin	NA
UHGV-1954056_3	eggNOG-mapper	428125.CLOLEP_01426	NA	NA
UHGV-1954056_3	Structural annotation	COG1262	NA	NA
UHGV-1954056_5	eggNOG-mapper	1232443.BAIA02000078_gene14	nuclear chromosome segregation	NA
UHGV-1954056_5	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1954056_6	PHROG	phrog_521	tail protein	tail
UHGV-1954056_6	UniRef90	UniRef90_A0A6L6XE44	NA	NA
UHGV-1954056_6	eggNOG-mapper	397288.C806_00058	NA	NA
UHGV-1954056_6	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-1954056_6	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-1954056_7	PHROG	phrog_6	baseplate protein	tail
UHGV-1954056_7	UniRef90	UniRef90_A0A3D4RAP0	Baseplate_J domain-containing protein	NA
UHGV-1954056_7	eggNOG-mapper	1408324.JNJK01000006_gene1396	Baseplate J-like protein	NA
UHGV-1954056_7	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-1954056_7	COG	COG3299	NA	NA
UHGV-1954056_7	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-1954056_8	PHROG	phrog_120	baseplate protein	tail
UHGV-1954056_8	UniRef90	UniRef90_A0A3R6GDN3	NA	NA
UHGV-1954056_8	eggNOG-mapper	1408324.JNJK01000006_gene1395	NA	NA
UHGV-1954056_8	Pfam	PF10934	NA	DUF2634
UHGV-1954056_8	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-1954056_8	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-1954056_9	Structural annotation	PF01957, MF_00216, TIGR00523, COG0361	NA	NA
UHGV-1954056_10	PHROG	phrog_400	tail protein	tail
UHGV-1954056_10	UniRef90	UniRef90_A0A6L5XWJ4	NlpC/P60 family protein	NA
UHGV-1954056_10	eggNOG-mapper	397288.C806_00062	NLP P60 protein	NA
UHGV-1954056_10	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1954056_10	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-1954056_11	PHROG	phrog_380	endolysin	lysis
UHGV-1954056_11	UniRef90	UniRef90_A0A6L9HHE3	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-1954056_11	eggNOG-mapper	1230342.CTM_14423	Lysin motif	NA
UHGV-1954056_11	Pfam	PF21821	Dit-like phage tail protein	Dit_like
UHGV-1954056_11	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-1954056_11	Structural annotation	PF21821, MF_02014, TIGR02126, NF010723, COG3499	NA	NA
UHGV-1954056_12	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-1954056_12	UniRef90	UniRef90_UPI001A49476E	phage tail tape measure protein	NA
UHGV-1954056_12	eggNOG-mapper	1408324.JNJK01000006_gene1391	Phage-related minor tail protein	NA
UHGV-1954056_12	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1954056_12	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1954056_12	COG	COG5283	Phage-related tail protein	NA
UHGV-1954056_12	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1954056_13	PHROG	phrog_2722	NA	unknown function
UHGV-1954056_14	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-1954056_14	UniRef90	UniRef90_D4MVP5	Phage XkdN-like protein	NA
UHGV-1954056_14	eggNOG-mapper	1408324.JNJK01000006_gene1389	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-1954056_14	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-1954056_14	Structural annotation	PF08890	NA	NA
UHGV-1954056_15	PHROG	phrog_365	tail protein	tail
UHGV-1954056_15	UniRef90	UniRef90_A0A1C6J560	Phage-like element PBSX protein xkdM	NA
UHGV-1954056_15	eggNOG-mapper	397288.C806_00067	Phage tail tube protein	NA
UHGV-1954056_15	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-1954056_15	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-1954056_16	PHROG	phrog_1480	tail sheath	tail
UHGV-1954056_16	UniRef90	UniRef90_A0A3R6K9U3	Phage tail sheath protein	NA
UHGV-1954056_16	eggNOG-mapper	1408324.JNJK01000006_gene1387	Phage tail sheath C-terminal domain	NA
UHGV-1954056_16	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-1954056_16	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-1954056_16	Structural annotation	PF10758, COG3497	NA	NA
UHGV-1954056_17	PHROG	phrog_525	NA	unknown function
UHGV-1954056_17	eggNOG-mapper	397288.C806_00069	NA	NA
UHGV-1954056_17	Pfam	PF20765	NA	DUF6838
UHGV-1954056_17	Structural annotation	PF20765, COG5003	NA	NA
UHGV-1954056_18	UniRef90	UniRef90_A0A3R6JLV1	HK97 gp10 family phage protein	NA
UHGV-1954056_18	eggNOG-mapper	397288.C806_00070	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1954056_18	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1954056_18	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-1954056_19	PHROG	phrog_25	head closure Hc1	connector
UHGV-1954056_19	UniRef90	UniRef90_A0A3R6GCF7	Head-tail adaptor protein	NA
UHGV-1954056_19	eggNOG-mapper	397288.C806_00071	Phage head-tail joining protein	NA
UHGV-1954056_19	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1954056_19	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1954056_19	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1954056_19	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1954056_20	UniRef90	UniRef90_A0A3R6IUJ7	Phage gp6-like head-tail connector protein	NA
UHGV-1954056_20	eggNOG-mapper	632245.CLP_2916	Phage gp6-like head-tail connector protein	NA
UHGV-1954056_20	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1954056_20	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1954056_21	PHROG	phrog_10	major head protein	head and packaging
UHGV-1954056_21	UniRef90	UniRef90_A0A3R6JLW6	Phage major capsid protein	NA
UHGV-1954056_21	eggNOG-mapper	397288.C806_00073	phage major capsid protein, HK97 family	NA
UHGV-1954056_21	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1954056_21	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1954056_21	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1954056_21	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1954056_22	KOfam	K06904	NA	NA
UHGV-1954056_22	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1954056_22	UniRef90	UniRef90_A0A415P1D8	HK97 family phage prohead protease	NA
UHGV-1954056_22	eggNOG-mapper	632245.CLP_2918	Phage prohead protease, HK97 family	NA
UHGV-1954056_22	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1954056_22	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1954056_22	COG	COG3740	Phage head maturation protease	NA
UHGV-1954056_22	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1954056_23	PHROG	phrog_12	portal protein	head and packaging
UHGV-1954056_23	UniRef90	UniRef90_A0A3R6H1A9	Phage portal protein	NA
UHGV-1954056_23	eggNOG-mapper	397288.C806_00075	Portal protein	NA
UHGV-1954056_23	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1954056_23	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1954056_23	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1954056_23	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-1954056_24	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1954056_24	UniRef90	UniRef90_A0A3R6HK66	Terminase	NA
UHGV-1954056_24	eggNOG-mapper	1414720.CBYM010000002_gene575	Terminase	NA
UHGV-1954056_24	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1954056_24	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1954056_24	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1954056_24	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1954056_25	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-1954056_25	UniRef90	UniRef90_A0A1C6JNN5	Phage terminase, small subunit	NA
UHGV-1954056_25	eggNOG-mapper	1414720.CBYM010000002_gene576	NA	NA
UHGV-1954056_25	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1954056_26	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1954056_26	UniRef90	UniRef90_UPI001A39C1C2	HNH endonuclease	NA
UHGV-1954056_26	eggNOG-mapper	397288.C806_00078	HNH nucleases	NA
UHGV-1954056_26	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1954056_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1954056_27	eggNOG-mapper	1069534.LRC_07220	NA	NA
UHGV-1954056_27	Structural annotation	PF07374, MF_00674, NF001066, COG2739	NA	NA
UHGV-1954056_30	eggNOG-mapper	1449050.JNLE01000005_gene3947	NA	NA
UHGV-1954056_34	PHROG	phrog_1689	nucleotide kinase	other
UHGV-1954056_34	UniRef90	UniRef90_A0A417W9V0	NA	NA
UHGV-1954056_34	eggNOG-mapper	411473.RUMCAL_00920	NA	NA
UHGV-1954056_34	Pfam	PF11753	NA	DUF3310
UHGV-1954056_35	Structural annotation	COG4446	NA	NA
UHGV-1954056_36	Structural annotation	PF06257, TIGR00739, COG4466	NA	NA
UHGV-1954056_37	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1954056_37	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1954056_37	UniRef90	UniRef90_A0A417W902	Single-stranded DNA-binding protein	NA
UHGV-1954056_37	eggNOG-mapper	411489.CLOL250_00507	Single-stranded DNA-binding protein	NA
UHGV-1954056_37	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1954056_37	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1954056_37	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1954056_37	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1954056_37	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1954056_38	PHROG	phrog_5781	NA	unknown function
UHGV-1954056_38	UniRef90	UniRef90_A0A3R6XYD6	NA	NA
UHGV-1954056_38	eggNOG-mapper	1321782.HMPREF1986_00330	NA	NA
UHGV-1954056_38	Pfam	PF14359	NA	DUF4406
UHGV-1954056_38	Structural annotation	PF14359, TIGR02133, COG3613	NA	NA
UHGV-1954056_39	UniRef90	UniRef90_A0A417WAJ1	HNH endonuclease	NA
UHGV-1954056_39	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-1954056_40	PHROG	phrog_15077	NA	unknown function
UHGV-1954056_40	UniRef90	UniRef90_A0A3E3IZW1	NA	NA
UHGV-1954056_40	eggNOG-mapper	1280698.AUJS01000007_gene1019	NA	NA
UHGV-1954056_40	Structural annotation	PF11300, NF033725	NA	NA
UHGV-1954056_41	PHROG	phrog_8470	NA	unknown function
UHGV-1954056_41	UniRef90	UniRef90_A0A1I3G898	PcfJ-like protein	NA
UHGV-1954056_41	eggNOG-mapper	742733.HMPREF9469_00219	PcfJ-like protein	NA
UHGV-1954056_41	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-1954056_41	Structural annotation	PF14284	NA	NA
UHGV-1954056_42	PHROG	phrog_4433	NA	unknown function
UHGV-1954056_42	eggNOG-mapper	411459.RUMOBE_01777	regulation of DNA-templated transcription, elongation	NA
UHGV-1954056_42	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-1954056_42	Structural annotation	PF12120, NF000318	NA	NA
UHGV-1954056_43	eggNOG-mapper	411902.CLOBOL_05699	NA	NA
UHGV-1954056_44	UniRef90	UniRef90_A0A417W8Y5	RNase H type-1 domain-containing protein	NA
UHGV-1954056_44	eggNOG-mapper	351627.Csac_1903	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-1954056_44	Pfam	PF00075	RNase H	RNase_H
UHGV-1954056_44	COG	COG0328	Ribonuclease HI	NA
UHGV-1954056_44	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-1954056_45	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1954056_45	eggNOG-mapper	483218.BACPEC_01173	NA	NA
UHGV-1954056_45	Structural annotation	PF21578, NF041486	NA	NA
UHGV-1954056_47	UniRef90	UniRef90_R5VU56	HTH_11 domain-containing protein	NA
UHGV-1954056_47	Structural annotation	PF20063	NA	NA
UHGV-1954056_48	eggNOG-mapper	411468.CLOSCI_00322	NA	NA
UHGV-1954056_50	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-1954056_50	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1954056_50	UniRef90	UniRef90_A0A417W960	XRE family transcriptional regulator	NA
UHGV-1954056_50	eggNOG-mapper	1235793.C809_03587	Helix-turn-helix XRE-family like proteins	NA
UHGV-1954056_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1954056_50	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1954056_50	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1954056_52	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-1954056_52	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1954056_52	UniRef90	UniRef90_A0A417W8X2	XRE family transcriptional regulator	NA
UHGV-1954056_52	eggNOG-mapper	411468.CLOSCI_01455	Helix-turn-helix XRE-family like proteins	NA
UHGV-1954056_52	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1954056_52	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1954056_52	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1954056_53	eggNOG-mapper	411471.SUBVAR_05817	NA	NA
UHGV-1954056_53	Pfam	PF08797	HIRAN domain	HIRAN
UHGV-1954056_55	Structural annotation	NF002013, COG1859	NA	NA
UHGV-1954056_56	PHROG	phrog_13890	NA	unknown function
UHGV-1954056_56	UniRef90	UniRef90_A5Z406	Ribbon-helix-helix protein, CopG family	NA
UHGV-1954056_57	KOfam	K14059	int; integrase	NA
UHGV-1954056_57	PHROG	phrog_1	integrase	integration and excision
UHGV-1954056_57	UniRef90	UniRef90_A0A3R6QDD5	Site-specific integrase	NA
UHGV-1954056_57	eggNOG-mapper	1280698.AUJS01000007_gene999	Phage integrase family	NA
UHGV-1954056_57	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1954056_57	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1954056_57	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1954056_57	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA