UHGV-1954281

Genome information

Genome length 37,945 bps

CDS count 60

Completeness 62.35% (medium-quality)

geNomad score 0.9461

Prediction confidence Confident

Genome information
Genome ID	UHGV-1954281
vOTU ID	vOTU-041167
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300008520\|Ga0111044_100227\|provirus_59859_97803
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.35% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9461
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.85
Jumbo phage	No

Genome content
Genome length	37,945 bps
GC content	39.94%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	84.78%
Average CDS length	542.00 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1954281_1	UniRef90	UniRef90_A0A5E8KD04	OMP_b-brl domain-containing protein	NA
UHGV-1954281_1	eggNOG-mapper	435590.BVU_2463	Outer membrane protein beta-barrel domain	NA
UHGV-1954281_1	Pfam	PF13505	Outer membrane protein beta-barrel domain	OMP_b-brl
UHGV-1954281_2	UniRef90	UniRef90_A0A174PJU5	Mobilization protein	NA
UHGV-1954281_2	eggNOG-mapper	435590.BVU_2464	Plasmid recombination enzyme	NA
UHGV-1954281_2	Pfam	PF01076	Plasmid recombination enzyme	Mob_Pre
UHGV-1954281_2	NCBIFam	NF041497.1	MobV family relaxase	NA
UHGV-1954281_2	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1954281_2	Structural annotation	PF01076, NF041497	NA	NA
UHGV-1954281_3	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-1954281_3	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-1954281_3	UniRef90	UniRef90_A5ZGT9	ZnF_CHCC domain-containing protein	NA
UHGV-1954281_3	eggNOG-mapper	411901.BACCAC_02109	NA	NA
UHGV-1954281_3	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-1954281_3	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-1954281_3	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-1954281_3	Structural annotation	PF13362, PF01807, MF_00974, TIGR01391, COG4643	NA	NA
UHGV-1954281_4	UniRef90	UniRef90_A0A016BZJ3	AAA domain protein	NA
UHGV-1954281_4	eggNOG-mapper	411901.BACCAC_02110	COG NOG25714 non supervised orthologous group	NA
UHGV-1954281_4	Pfam	PF13481	AAA domain	AAA_25
UHGV-1954281_4	COG	COG0467	RecA-superfamily ATPase, KaiC/GvpD/RAD55 family	NA
UHGV-1954281_4	Structural annotation	PF06745, PF09999, MF_00350, TIGR00416, COG3598	NA	NA
UHGV-1954281_5	UniRef90	UniRef90_A0A3E4XQ51	NA	NA
UHGV-1954281_5	eggNOG-mapper	435590.BVU_2467	NA	NA
UHGV-1954281_5	Pfam	PF12964	NA	DUF3853
UHGV-1954281_5	Structural annotation	PF12964, NF040990, COG3311	NA	NA
UHGV-1954281_6	eggNOG-mapper	411901.BACCAC_02112	NA	NA
UHGV-1954281_6	Structural annotation	PF05384, TIGR02971	NA	NA
UHGV-1954281_7	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1954281_7	PHROG	phrog_1	integrase	integration and excision
UHGV-1954281_7	UniRef90	UniRef90_E5VD50	Phage integrase	NA
UHGV-1954281_7	eggNOG-mapper	411901.BACCAC_02113	Belongs to the 'phage' integrase family	NA
UHGV-1954281_7	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-1954281_7	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-1954281_7	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1954281_7	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1954281_7	Structural annotation	PF00589, PF13102, PF17293, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-1954281_8	eggNOG-mapper	483215.BACFIN_07424	NA	NA
UHGV-1954281_9	KOfam	K04034	bchE; anaerobic magnesium-protoporphyrin IX monomethyl ester cyclase [EC:1.21.98.3]	NA
UHGV-1954281_9	UniRef90	UniRef90_B0NNQ6	Radical SAM domain protein	NA
UHGV-1954281_9	eggNOG-mapper	449673.BACSTE_01020	NA	NA
UHGV-1954281_9	Pfam	PF02310	B12 binding domain	B12-binding
UHGV-1954281_9	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-1954281_9	Pfam	PF13311	NA	DUF4080
UHGV-1954281_9	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-1954281_10	KOfam	K07720	yesN; two-component system, response regulator YesN	NA
UHGV-1954281_10	PHROG	phrog_7620	transcriptional regulator	transcription regulation
UHGV-1954281_10	UniRef90	UniRef90_B0NNQ7	Transcriptional regulator, AraC family	NA
UHGV-1954281_10	eggNOG-mapper	449673.BACSTE_01021	transcriptional regulator (AraC	NA
UHGV-1954281_10	Pfam	PF12833	Helix-turn-helix domain	HTH_18
UHGV-1954281_10	COG	COG2207	AraC-type DNA-binding domain and AraC-containing proteins	NA
UHGV-1954281_13	eggNOG-mapper	585543.HMPREF0969_03379	NA	NA
UHGV-1954281_14	Pfam	PF05593	RHS Repeat	RHS_repeat
UHGV-1954281_14	NCBIFam	TIGR01643.1	YD repeat-containing protein	NA
UHGV-1954281_14	COG	COG3209	NA	NA
UHGV-1954281_14	Structural annotation	PF16435, MF_01065, NF033566, COG2849	NA	NA
UHGV-1954281_15	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1954281_15	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1954281_15	UniRef90	UniRef90_A0A3E4N394	Helix-turn-helix domain-containing protein	NA
UHGV-1954281_15	eggNOG-mapper	1268240.ATFI01000007_gene448	Peptidase S24-like	NA
UHGV-1954281_15	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1954281_15	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1954281_15	Structural annotation	PF00717, PF13560, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-1954281_18	PHROG	phrog_1086	NA	unknown function
UHGV-1954281_18	UniRef90	UniRef90_A0A173Z9U0	NA	NA
UHGV-1954281_18	eggNOG-mapper	357276.EL88_11565	WYL_2, Sm-like SH3 beta-barrel fold	NA
UHGV-1954281_18	Pfam	PF10902	WYL_2, Sm-like SH3 beta-barrel fold	WYL_2
UHGV-1954281_18	Structural annotation	PF10902	NA	NA
UHGV-1954281_24	UniRef90	UniRef90_A0A413UTK2	DNA-binding response regulator	NA
UHGV-1954281_24	eggNOG-mapper	357276.EL88_11540	response regulator	NA
UHGV-1954281_24	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-1954281_24	Structural annotation	PF00196, COG2771	NA	NA
UHGV-1954281_25	eggNOG-mapper	762968.HMPREF9441_02244	NA	NA
UHGV-1954281_25	Structural annotation	PF11112	NA	NA
UHGV-1954281_26	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1954281_26	UniRef90	UniRef90_A0A380Z5W5	ATP-binding protein	NA
UHGV-1954281_26	eggNOG-mapper	357276.EL88_11530	AAA domain	NA
UHGV-1954281_26	Pfam	PF13479	AAA domain	AAA_24
UHGV-1954281_26	COG	COG1100	GTPase SAR1 family domain	NA
UHGV-1954281_26	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-1954281_27	PHROG	phrog_35319	NA	unknown function
UHGV-1954281_27	UniRef90	UniRef90_A0A7K1HT24	HNH endonuclease	NA
UHGV-1954281_27	eggNOG-mapper	411477.PARMER_02080	NA	NA
UHGV-1954281_27	Structural annotation	PF10926, MF_03030	NA	NA
UHGV-1954281_28	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1954281_28	eggNOG-mapper	411477.PARMER_02079	NA	NA
UHGV-1954281_28	Structural annotation	PF05772, NF007281	NA	NA
UHGV-1954281_29	PHROG	phrog_35807	NA	unknown function
UHGV-1954281_29	UniRef90	UniRef90_A0A173Z9Q2	DNA-directed RNA polymerase subunit beta	NA
UHGV-1954281_29	eggNOG-mapper	357276.EL88_11505	RNA polymerase activity	NA
UHGV-1954281_29	COG	COG0085	DNA-directed RNA polymerase, beta subunit/140 kD subunit	NA
UHGV-1954281_29	Structural annotation	PF14902	NA	NA
UHGV-1954281_31	PHROG	phrog_5034	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1954281_31	UniRef90	UniRef90_UPI000E4AE634	recombination protein NinG	NA
UHGV-1954281_31	eggNOG-mapper	411477.PARMER_02075	Bacteriophage Lambda NinG protein	NA
UHGV-1954281_31	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-1954281_31	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1954281_31	Structural annotation	PF05766	NA	NA
UHGV-1954281_32	eggNOG-mapper	411477.PARMER_02074	helicase superfamily c-terminal domain	NA
UHGV-1954281_32	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-1954281_32	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-1954281_33	UniRef90	UniRef90_A0A1Q9HEZ2	GIY-YIG domain-containing protein	NA
UHGV-1954281_34	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1954281_34	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1954281_34	UniRef90	UniRef90_A0A642PUK3	Helix-turn-helix transcriptional regulator	NA
UHGV-1954281_34	eggNOG-mapper	449673.BACSTE_00558	NA	NA
UHGV-1954281_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1954281_34	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1954281_34	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1954281_35	PHROG	phrog_1086	NA	unknown function
UHGV-1954281_35	UniRef90	UniRef90_UPI00189D2D4E	SH3 beta-barrel fold-containing protein	NA
UHGV-1954281_35	eggNOG-mapper	585543.HMPREF0969_03348	WYL_2, Sm-like SH3 beta-barrel fold	NA
UHGV-1954281_35	Pfam	PF10902	WYL_2, Sm-like SH3 beta-barrel fold	WYL_2
UHGV-1954281_35	Structural annotation	PF10902	NA	NA
UHGV-1954281_37	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1954281_37	UniRef90	UniRef90_UPI00189A9153	NUMOD4 domain-containing protein	NA
UHGV-1954281_37	eggNOG-mapper	1206110.L0P6F5_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-1954281_37	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-1954281_37	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-1954281_37	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1954281_37	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-1954281_38	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-1954281_38	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1954281_38	UniRef90	UniRef90_A7AF84	Helicase C-terminal domain protein	NA
UHGV-1954281_38	eggNOG-mapper	411477.PARMER_02074	helicase superfamily c-terminal domain	NA
UHGV-1954281_38	PADLOC	mREase_IV_00004	Type IV methyl-directed restriction enzyme	RM
UHGV-1954281_38	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-1954281_38	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1954281_38	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-1954281_38	Structural annotation	PF18766, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-1954281_40	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1954281_40	UniRef90	UniRef90_UPI001E2B4A99	NA	NA
UHGV-1954281_40	eggNOG-mapper	411477.PARMER_02072	DnaD domain protein	NA
UHGV-1954281_40	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1954281_40	Structural annotation	PF08222, NF033788, COG4901	NA	NA
UHGV-1954281_41	PHROG	phrog_29547	NA	unknown function
UHGV-1954281_41	UniRef90	UniRef90_UPI001F4549DB	NA	NA
UHGV-1954281_41	eggNOG-mapper	411477.PARMER_02071	NA	NA
UHGV-1954281_41	Pfam	PF20338	NA	DUF6633
UHGV-1954281_41	Structural annotation	PF20338	NA	NA
UHGV-1954281_43	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1954281_43	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1954281_43	UniRef90	UniRef90_A7AF77	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1954281_43	eggNOG-mapper	411477.PARMER_02067	C-5 cytosine-specific DNA methylase	NA
UHGV-1954281_43	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-1954281_43	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1954281_43	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1954281_43	Structural annotation	PF00145, MF_02100, TIGR00675, COG0270	NA	NA
UHGV-1954281_44	PHROG	phrog_8684	NA	unknown function
UHGV-1954281_44	UniRef90	UniRef90_A0A3E4ZLX8	YopX domain-containing protein	NA
UHGV-1954281_44	eggNOG-mapper	411477.PARMER_02066	YopX protein	NA
UHGV-1954281_44	Pfam	PF09643	YopX protein	YopX
UHGV-1954281_44	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-1954281_44	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1954281_46	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1954281_46	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1954281_46	UniRef90	UniRef90_UPI0012BB9697	single-stranded DNA-binding protein	NA
UHGV-1954281_46	eggNOG-mapper	411477.PARMER_02064	Single-stranded DNA-binding protein	NA
UHGV-1954281_46	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1954281_46	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1954281_46	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1954281_46	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1954281_46	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1954281_47	PHROG	phrog_38368	NA	unknown function
UHGV-1954281_47	eggNOG-mapper	411477.PARMER_02063	NA	NA
UHGV-1954281_47	Structural annotation	NF004687	NA	NA
UHGV-1954281_48	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-1954281_48	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-1954281_48	UniRef90	UniRef90_A7AF72	YcfA-like protein	NA
UHGV-1954281_48	eggNOG-mapper	411477.PARMER_02062	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-1954281_48	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-1954281_48	Structural annotation	PF07927, COG1724	NA	NA
UHGV-1954281_49	UniRef90	UniRef90_A0A5C6KKY5	Type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-1954281_49	eggNOG-mapper	411477.PARMER_02061	PFAM Uncharacterised protein family UPF0150	NA
UHGV-1954281_49	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-1954281_49	Structural annotation	PF21748, NF041951, COG1598	NA	NA
UHGV-1954281_51	UniRef90	UniRef90_A0A3E4K7K6	Helix-turn-helix transcriptional regulator	NA
UHGV-1954281_51	eggNOG-mapper	679190.HMPREF0650_0363	NA	NA
UHGV-1954281_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1954281_51	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1954281_51	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1954281_52	eggNOG-mapper	411477.PARMER_02054	NA	NA
UHGV-1954281_53	eggNOG-mapper	411477.PARMER_02053	NA	NA
UHGV-1954281_54	UniRef90	UniRef90_A0A3E4X1N6	NA	NA
UHGV-1954281_54	eggNOG-mapper	585543.HMPREF0969_03374	NA	NA
UHGV-1954281_54	Pfam	PF12989	NA	DUF3873
UHGV-1954281_54	Structural annotation	PF12989, NF041597	NA	NA
UHGV-1954281_55	PHROG	phrog_625	NA	unknown function
UHGV-1954281_55	UniRef90	UniRef90_A6LAC9	ASCH domain-containing protein	NA
UHGV-1954281_55	eggNOG-mapper	435591.BDI_0875	NA	NA
UHGV-1954281_55	Pfam	PF04266	ASCH domain	ASCH
UHGV-1954281_55	Structural annotation	PF04322, NF003443	NA	NA
UHGV-1954281_56	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-1954281_56	UniRef90	UniRef90_A6LAD0	PAPS_reduct domain-containing protein	NA
UHGV-1954281_56	eggNOG-mapper	585543.HMPREF0969_03372	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-1954281_56	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-1954281_56	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1954281_56	Structural annotation	PF01507, MF_00063, TIGR02057, COG0175	NA	NA
UHGV-1954281_57	PHROG	phrog_9353	NA	unknown function
UHGV-1954281_57	UniRef90	UniRef90_I9RI63	ParB domain-containing protein	NA
UHGV-1954281_57	eggNOG-mapper	435591.BDI_0877	DNA binding	NA
UHGV-1954281_57	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1954281_57	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1954281_57	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1954281_57	Structural annotation	PF02195, MF_02015, TIGR03764, COG1475	NA	NA
UHGV-1954281_58	PHROG	phrog_4188	NA	unknown function
UHGV-1954281_59	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-1954281_59	eggNOG-mapper	585543.HMPREF0969_03369	NA	NA
UHGV-1954281_59	Structural annotation	PF07141	NA	NA
UHGV-1954281_60	UniRef90	UniRef90_A0A6L3IHW5	PBSX family phage terminase large subunit (Fragment)	NA
UHGV-1954281_60	eggNOG-mapper	357276.EL88_11340	Phage terminase, large subunit, PBSX family	NA
UHGV-1954281_60	COG	COG1783	Phage terminase large subunit	NA