UHGV-1956977

Genome information

Genome length 37,704 bps

CDS count 63

Completeness 99.90% (high-quality)

geNomad score 0.9605

Prediction confidence Confident

Genome information
Genome ID	UHGV-1956977
vOTU ID	vOTU-011160
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300014529\|Ga0169876_100246\|provirus_16934_58905
BioSample	SAMEA2580288
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9605
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	80.05
Jumbo phage	No

Genome content
Genome length	37,704 bps
GC content	40.04%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	93.61%
Average CDS length	566.10 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1956977_1	KOfam	K14059	int; integrase	NA
UHGV-1956977_1	PHROG	phrog_1	integrase	integration and excision
UHGV-1956977_1	UniRef90	UniRef90_G1VMI7	Tyr recombinase domain-containing protein	NA
UHGV-1956977_1	eggNOG-mapper	1238184.CM001792_gene62	Phage integrase family	NA
UHGV-1956977_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1956977_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1956977_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-1956977_2	PHROG	phrog_10934	NA	unknown function
UHGV-1956977_2	eggNOG-mapper	1069533.Sinf_0760	TM2 domain	NA
UHGV-1956977_2	COG	COG2314	NA	NA
UHGV-1956977_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1956977_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1956977_3	UniRef90	UniRef90_UPI001F05329D	LexA family transcriptional regulator	NA
UHGV-1956977_3	eggNOG-mapper	552396.HMPREF0863_02447	Represses a number of genes involved in the response to DNA damage (SOS response)	NA
UHGV-1956977_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1956977_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1956977_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1956977_3	Structural annotation	PF00717, PF12844, MF_00015, NF007621, NF041951, COG2932	NA	NA
UHGV-1956977_4	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-1956977_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1956977_4	UniRef90	UniRef90_UPI001F05DA7A	helix-turn-helix domain-containing protein	NA
UHGV-1956977_4	eggNOG-mapper	552396.HMPREF0863_02446	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1956977_4	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1956977_4	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-1956977_6	PHROG	phrog_19236	NA	unknown function
UHGV-1956977_8	PHROG	phrog_3240	NA	unknown function
UHGV-1956977_8	eggNOG-mapper	1158607.UAU_01711	NA	NA
UHGV-1956977_10	Structural annotation	PF11614, NF006325, COG2847	NA	NA
UHGV-1956977_11	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-1956977_11	UniRef90	UniRef90_UPI001C389B6A	Rha family transcriptional regulator	NA
UHGV-1956977_11	eggNOG-mapper	278197.PEPE_0752	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-1956977_11	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-1956977_11	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-1956977_11	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-1956977_11	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-1956977_11	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-1956977_15	PHROG	phrog_2139	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1956977_15	UniRef90	UniRef90_G1VRX4	PDDEXK_1 domain-containing protein	NA
UHGV-1956977_15	eggNOG-mapper	428127.EUBDOL_01249	NA	NA
UHGV-1956977_15	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-1956977_15	Structural annotation	PF12705, MF_03030, TIGR04328, COG2251	NA	NA
UHGV-1956977_16	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1956977_16	UniRef90	UniRef90_UPI000246CFB2	ERF family protein	NA
UHGV-1956977_16	eggNOG-mapper	386415.NT01CX_2192	ERF superfamily	NA
UHGV-1956977_16	Pfam	PF04404	ERF superfamily	ERF
UHGV-1956977_17	PHROG	phrog_7566	NA	unknown function
UHGV-1956977_17	UniRef90	UniRef90_A0A7X5CEC2	Phosphoenolpyruvate carboxykinase	NA
UHGV-1956977_17	eggNOG-mapper	508419.F8J187_9CAUD	NA	NA
UHGV-1956977_18	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1956977_18	eggNOG-mapper	428127.EUBDOL_01246	NA	NA
UHGV-1956977_18	Pfam	PF05772	NinB protein	NinB
UHGV-1956977_18	Structural annotation	PF05772	NA	NA
UHGV-1956977_19	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1956977_19	UniRef90	UniRef90_UPI000E4EB16B	NA	NA
UHGV-1956977_19	eggNOG-mapper	445974.CLORAM_02947	NA	NA
UHGV-1956977_19	Pfam	PF06356	NA	DUF1064
UHGV-1956977_19	Structural annotation	PF06356, MF_04160, NF033179	NA	NA
UHGV-1956977_21	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-1956977_21	PHROG	phrog_5708	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1956977_21	UniRef90	UniRef90_G1VRY0	DnaB_2 domain-containing protein	NA
UHGV-1956977_21	eggNOG-mapper	1415774.U728_867	DnaD domain protein	NA
UHGV-1956977_21	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-1956977_21	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-1956977_21	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1956977_21	Structural annotation	PF07261, PF09681, TIGR01446, TIGR01714, COG3935	NA	NA
UHGV-1956977_22	Structural annotation	PF21291, TIGR03070, COG1476	NA	NA
UHGV-1956977_24	KOfam	K24451	zim; modification methylase	NA
UHGV-1956977_24	PHROG	phrog_67	DNA methyltransferase	other
UHGV-1956977_24	UniRef90	UniRef90_A0A6N2XFY6	Methyltransferase	NA
UHGV-1956977_24	eggNOG-mapper	908340.HMPREF9406_2596	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-1956977_24	PADLOC	MTase_II_00139	Type II methyltransferase	RM
UHGV-1956977_24	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1956977_24	COG	COG0863	DNA modification methylase	NA
UHGV-1956977_25	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-1956977_25	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1956977_25	UniRef90	UniRef90_N9V9T3	Helicase ATP-binding domain-containing protein	NA
UHGV-1956977_25	eggNOG-mapper	999413.HMPREF1094_02025	DEAD-like helicases superfamily	NA
UHGV-1956977_25	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-1956977_25	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1956977_25	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-1956977_25	Structural annotation	PF06862, MF_01821, NF003426, COG0553	NA	NA
UHGV-1956977_27	eggNOG-mapper	1232449.BAHV02000016_gene1829	NA	NA
UHGV-1956977_28	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1956977_28	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1956977_28	UniRef90	UniRef90_UPI001C384F19	single-stranded DNA-binding protein	NA
UHGV-1956977_28	eggNOG-mapper	658659.HMPREF0983_02345	Single-stranded DNA-binding protein	NA
UHGV-1956977_28	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1956977_28	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1956977_28	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1956977_28	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1956977_28	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-1956977_29	Structural annotation	PF18300, MF_00085, NF003076	NA	NA
UHGV-1956977_30	UniRef90	UniRef90_A0A223MTW1	NA	NA
UHGV-1956977_30	Pfam	PF04448	NA	DUF551
UHGV-1956977_30	Structural annotation	PF04448, NF041588	NA	NA
UHGV-1956977_32	UniRef90	UniRef90_UPI000E419D63	sigma-70 family RNA polymerase sigma factor	NA
UHGV-1956977_32	Structural annotation	PF04545, PF01920, TIGR01636	NA	NA
UHGV-1956977_33	PHROG	phrog_5200	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1956977_33	UniRef90	UniRef90_UPI000E4A45C8	HNH endonuclease	NA
UHGV-1956977_33	eggNOG-mapper	515635.Dtur_0346	endonuclease activity	NA
UHGV-1956977_33	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1956977_34	PHROG	phrog_419	NA	unknown function
UHGV-1956977_34	UniRef90	UniRef90_A6MAI4	Gp119	NA
UHGV-1956977_34	eggNOG-mapper	388452.A6MAI4_9CAUD	NA	NA
UHGV-1956977_36	PHROG	phrog_1233	NA	unknown function
UHGV-1956977_36	eggNOG-mapper	1232449.BAHV02000018_gene1535	NA	NA
UHGV-1956977_37	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-1956977_38	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1956977_38	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1956977_38	UniRef90	UniRef90_A0A3A6D9X8	Terminase small subunit	NA
UHGV-1956977_38	eggNOG-mapper	318464.IO99_00540	Terminase small subunit	NA
UHGV-1956977_38	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1956977_38	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1956977_38	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1956977_39	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1956977_39	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1956977_39	UniRef90	UniRef90_R6UVI8	PBSX family phage terminase large subunit	NA
UHGV-1956977_39	eggNOG-mapper	610130.Closa_1390	Terminase RNAseH like domain	NA
UHGV-1956977_39	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1956977_39	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1956977_39	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1956977_39	COG	COG1783	Phage terminase large subunit	NA
UHGV-1956977_39	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1956977_40	PHROG	phrog_64	portal protein	head and packaging
UHGV-1956977_40	UniRef90	UniRef90_R6UJX2	SPP1 family phage portal protein	NA
UHGV-1956977_40	eggNOG-mapper	1121335.Clst_0386	phage portal protein, SPP1	NA
UHGV-1956977_40	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1956977_40	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1956977_41	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-1956977_41	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1956977_41	UniRef90	UniRef90_R6VUX0	SPP1 gp7 family phage putative head morphogenesis protein	NA
UHGV-1956977_41	eggNOG-mapper	411468.CLOSCI_00291	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-1956977_41	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1956977_41	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-1956977_41	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1956977_41	COG	COG2369	NA	NA
UHGV-1956977_41	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1956977_43	PHROG	phrog_1315	NA	unknown function
UHGV-1956977_43	UniRef90	UniRef90_UPI001EDD2805	CpXC domain-containing protein	NA
UHGV-1956977_44	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1956977_44	UniRef90	UniRef90_UPI0011578897	phage scaffolding protein	NA
UHGV-1956977_44	eggNOG-mapper	1209989.TepiRe1_1150	Phage minor structural protein GP20	NA
UHGV-1956977_44	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1956977_44	Structural annotation	PF14265	NA	NA
UHGV-1956977_45	PHROG	phrog_247	major head protein	head and packaging
UHGV-1956977_45	UniRef90	UniRef90_A0A6L9HG48	Phage coat protein	NA
UHGV-1956977_45	eggNOG-mapper	1095750.HMPREF9970_0286	NA	NA
UHGV-1956977_45	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-1956977_45	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-1956977_45	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-1956977_46	UniRef90	UniRef90_UPI001F05A2A0	phage head-tail connector protein	NA
UHGV-1956977_46	eggNOG-mapper	1158612.I580_01914	NA	NA
UHGV-1956977_46	Structural annotation	PF05135	NA	NA
UHGV-1956977_47	UniRef90	UniRef90_A0A447EB47	Inhibitor of Type II CRISPR-Cas system	NA
UHGV-1956977_47	eggNOG-mapper	411468.CLOSCI_00284	NA	NA
UHGV-1956977_47	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1956977_48	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1956977_48	UniRef90	UniRef90_UPI00115A6A92	HK97 gp10 family phage protein	NA
UHGV-1956977_48	eggNOG-mapper	411468.CLOSCI_00283	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1956977_48	Structural annotation	PF11114, TIGR01725, COG5005	NA	NA
UHGV-1956977_49	Structural annotation	PF12691	NA	NA
UHGV-1956977_50	PHROG	phrog_2175	protein with Ig domain	other
UHGV-1956977_50	eggNOG-mapper	411468.CLOSCI_00281	NA	NA
UHGV-1956977_50	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-1956977_51	Structural annotation	PF16462	NA	NA
UHGV-1956977_52	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-1956977_52	UniRef90	UniRef90_UPI00115BFA1B	phage tail tape measure protein	NA
UHGV-1956977_52	eggNOG-mapper	411468.CLOSCI_00278	phage tail tape measure protein	NA
UHGV-1956977_52	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1956977_52	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1956977_52	COG	COG5283	Phage-related tail protein	NA
UHGV-1956977_52	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1956977_53	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1956977_53	UniRef90	UniRef90_A0A1T4XKQ1	Phage-related protein	NA
UHGV-1956977_53	eggNOG-mapper	411459.RUMOBE_00925	phage tail	NA
UHGV-1956977_53	COG	COG4722	Phage-related protein YomH	NA
UHGV-1956977_53	Structural annotation	PF20753, PF20195, TIGR01633, COG4722	NA	NA
UHGV-1956977_54	PHROG	phrog_18110	NA	unknown function
UHGV-1956977_54	UniRef90	UniRef90_H1BAL5	Phage minor structural protein	NA
UHGV-1956977_54	eggNOG-mapper	908340.HMPREF9406_0815	NA	NA
UHGV-1956977_54	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-1956977_54	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1956977_54	Pfam	PF00404	Dockerin type I domain	Dockerin_1
UHGV-1956977_54	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1956977_54	COG	COG4926	Phage-related protein	NA
UHGV-1956977_54	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-1956977_55	KOfam	K07296	ADIPOQ, ACDC; adiponectin	NA
UHGV-1956977_55	PHROG	phrog_819	tail protein	tail
UHGV-1956977_55	UniRef90	UniRef90_UPI001E4F503F	collagen-like protein	NA
UHGV-1956977_55	eggNOG-mapper	908340.HMPREF9406_2567	NA	NA
UHGV-1956977_55	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1956977_56	PHROG	phrog_5073	tail fiber protein	tail
UHGV-1956977_56	eggNOG-mapper	563192.HMPREF0179_03429	domain, Protein	NA
UHGV-1956977_56	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1956977_56	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-1956977_57	PHROG	phrog_24451	NA	unknown function
UHGV-1956977_57	eggNOG-mapper	908340.HMPREF9406_2565	NA	NA
UHGV-1956977_58	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-1956977_58	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-1956977_59	PHROG	phrog_443	holin	lysis
UHGV-1956977_59	UniRef90	UniRef90_UPI000BA3B743	holin	NA
UHGV-1956977_59	eggNOG-mapper	742733.HMPREF9469_01797	Putative lactococcus lactis phage r1t holin	NA
UHGV-1956977_59	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-1956977_59	Structural annotation	PF16945	NA	NA
UHGV-1956977_60	PHROG	phrog_37604	NA	unknown function
UHGV-1956977_60	eggNOG-mapper	1123075.AUDP01000020_gene1531	NA	NA
UHGV-1956977_61	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1956977_61	PHROG	phrog_670	endolysin	lysis
UHGV-1956977_61	UniRef90	UniRef90_N9VAY7	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-1956977_61	eggNOG-mapper	999413.HMPREF1094_00201	Ami_2	NA
UHGV-1956977_61	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1956977_61	COG	COG3942	Surface antigen	NA
UHGV-1956977_61	Structural annotation	PF01510, PF16775, MF_04111, COG5632	NA	NA
UHGV-1956977_62	PHROG	phrog_2695	NA	unknown function
UHGV-1956977_62	eggNOG-mapper	1121115.AXVN01000014_gene1232	SIR2-like domain	NA
UHGV-1956977_62	PADLOC	Sirtuin_Blast2	NA	NA
UHGV-1956977_62	COG	COG0846	NAD-dependent protein deacetylase, SIR2 family	NA
UHGV-1956977_63	PHROG	phrog_2695	NA	unknown function
UHGV-1956977_63	UniRef90	UniRef90_A0A2N1QJH9	SIR2_2 domain-containing protein	NA
UHGV-1956977_63	eggNOG-mapper	1408287.AXUR01000026_gene102	NAD+ binding	NA
UHGV-1956977_63	PADLOC	Sirtuin_Blast2	NA	NA
UHGV-1956977_63	Pfam	PF13289	SIR2-like domain	SIR2_2
UHGV-1956977_63	COG	COG0846	NAD-dependent protein deacetylase, SIR2 family	NA
UHGV-1956977_63	Structural annotation	PF13289	NA	NA