UHGV-1957147

Genome information

vOTU vOTU-011953

Genome length 34,131 bps

CDS count 50

Completeness 99.90% (high-quality)

geNomad score 0.9639

Prediction confidence Confident

Genome information
Genome ID	UHGV-1957147
vOTU ID	vOTU-011953
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300008599\|Ga0111091_100108\|provirus_36_34166
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9639
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.65
Jumbo phage	No

Genome content
Genome length	34,131 bps
GC content	46.61%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	91.55%
Average CDS length	628.26 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1957147_1	KOfam	K04769	spoVT; AbrB family transcriptional regulator, stage V sporulation protein T	NA
UHGV-1957147_1	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-1957147_1	UniRef90	UniRef90_A0A3D5PDC4	SpoVT-AbrB domain-containing protein	NA
UHGV-1957147_1	eggNOG-mapper	1123252.ATZF01000011_gene3133	Stage V sporulation protein T C-terminal, transcription factor	NA
UHGV-1957147_1	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-1957147_1	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-1957147_1	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-1957147_1	Structural annotation	PF05651, PF04014, MF_00621, TIGR02851, COG2002, COG1956	NA	NA
UHGV-1957147_3	NCBIFam	NF041793.1	ORF56 family plasmid copy control protein	NA
UHGV-1957147_7	eggNOG-mapper	479431.Namu_0451	NA	NA
UHGV-1957147_8	PHROG	phrog_5984	NA	unknown function
UHGV-1957147_8	eggNOG-mapper	411459.RUMOBE_01041	NA	NA
UHGV-1957147_8	Structural annotation	PF19561	NA	NA
UHGV-1957147_9	PHROG	phrog_111	DNA methyltransferase	other
UHGV-1957147_9	UniRef90	UniRef90_A0A1Q6RL92	Adenine methyltransferase	NA
UHGV-1957147_9	eggNOG-mapper	1567011.A0A0A7RUD1_9VIRU	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-1957147_9	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-1957147_9	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-1957147_9	Structural annotation	PF05869, MF_03187, TIGR01712, COG2263	NA	NA
UHGV-1957147_10	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1957147_10	PHROG	phrog_67	DNA methyltransferase	other
UHGV-1957147_10	UniRef90	UniRef90_A0A1Q6RLA2	Methyltransferase	NA
UHGV-1957147_10	eggNOG-mapper	1434319.W5RV19_9CAUD	helicase activity	NA
UHGV-1957147_10	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-1957147_10	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1957147_10	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-1957147_13	PHROG	phrog_24368	NA	unknown function
UHGV-1957147_13	eggNOG-mapper	1235798.C817_02588	NA	NA
UHGV-1957147_14	PHROG	phrog_24386	NA	unknown function
UHGV-1957147_14	eggNOG-mapper	1127696.HMPREF9134_00481	phosphatase activity	NA
UHGV-1957147_14	COG	COG0561	Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatases	NA
UHGV-1957147_15	UniRef90	UniRef90_A0A3D2D6W4	HTH cro/C1-type domain-containing protein	NA
UHGV-1957147_15	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1957147_16	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1957147_16	eggNOG-mapper	1145276.T479_20115	NA	NA
UHGV-1957147_16	Structural annotation	PF21578	NA	NA
UHGV-1957147_17	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-1957147_17	PHROG	phrog_56	DNA methyltransferase	other
UHGV-1957147_17	UniRef90	UniRef90_A0A1Q6RL79	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-1957147_17	eggNOG-mapper	1327970.R9ZXR7_9CAUD	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-1957147_17	PADLOC	MTase_II_00080	Type II methyltransferase	RM
UHGV-1957147_17	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-1957147_17	Structural annotation	PF02086, MF_01012, TIGR00571, COG0338	NA	NA
UHGV-1957147_18	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-1957147_18	UniRef90	UniRef90_A0A1Q6RL78	NA	NA
UHGV-1957147_18	eggNOG-mapper	1582152.A0A0A8WI22_9CAUD	NA	NA
UHGV-1957147_18	Pfam	PF12961	NA	DUF3850
UHGV-1957147_18	Structural annotation	PF12961, MF_00684, NF003443, COG4043	NA	NA
UHGV-1957147_20	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-1957147_20	UniRef90	UniRef90_UPI001BEB79E1	helix-turn-helix domain-containing protein	NA
UHGV-1957147_20	eggNOG-mapper	1414720.CBYM010000001_gene693	NA	NA
UHGV-1957147_21	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-1957147_21	UniRef90	UniRef90_A0A1Q6RLA1	HNH domain-containing protein	NA
UHGV-1957147_21	eggNOG-mapper	1211817.CCAT010000007_gene1042	HNH endonuclease	NA
UHGV-1957147_21	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1957147_21	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1957147_21	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-1957147_22	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1957147_23	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1957147_23	UniRef90	UniRef90_A0A3D2D5D4	Terminase	NA
UHGV-1957147_23	eggNOG-mapper	293826.Amet_2411	Terminase	NA
UHGV-1957147_23	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1957147_23	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1957147_23	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1957147_23	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1957147_24	Structural annotation	PF18059, NF041911	NA	NA
UHGV-1957147_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-1957147_25	UniRef90	UniRef90_A0A1S2LK30	Portal protein	NA
UHGV-1957147_25	eggNOG-mapper	1123288.SOV_2c03640	Phage portal protein	NA
UHGV-1957147_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1957147_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1957147_25	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1957147_26	KOfam	K06904	NA	NA
UHGV-1957147_26	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1957147_26	UniRef90	UniRef90_A0A3D2D6S6	HK97 family phage prohead protease	NA
UHGV-1957147_26	eggNOG-mapper	1123288.SOV_2c03620	Caudovirus prohead serine protease	NA
UHGV-1957147_26	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1957147_26	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1957147_26	COG	COG3740	Phage head maturation protease	NA
UHGV-1957147_26	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1957147_27	PHROG	phrog_10	major head protein	head and packaging
UHGV-1957147_27	UniRef90	UniRef90_A0A3D2D5M2	Phage major capsid protein	NA
UHGV-1957147_27	eggNOG-mapper	198094.BA_3784	Phage capsid family	NA
UHGV-1957147_27	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1957147_27	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1957147_27	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1957147_27	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1957147_29	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1957147_30	Structural annotation	PF05657, NF040576, COG5003	NA	NA
UHGV-1957147_31	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1957147_31	Structural annotation	TIGR01725	NA	NA
UHGV-1957147_32	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1957147_34	PHROG	phrog_8125	tail length tape measure protein	tail
UHGV-1957147_34	eggNOG-mapper	698769.JFBD01000002_gene2732	Phage tail tape measure protein	NA
UHGV-1957147_34	COG	COG3953	SLT domain protein	NA
UHGV-1957147_34	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-1957147_35	Pfam	PF16774	Distal tail protein, N-terminal domain	Dit_N
UHGV-1957147_35	Structural annotation	PF16774, PF21766, TIGR02241, COG4722	NA	NA
UHGV-1957147_36	Structural annotation	PF14594, TIGR03361, COG3500	NA	NA
UHGV-1957147_37	PHROG	phrog_13173	tail fiber protein	tail
UHGV-1957147_37	Pfam	PF11839	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
UHGV-1957147_38	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-1957147_39	PHROG	phrog_2824	virion structural protein	head and packaging
UHGV-1957147_39	UniRef90	UniRef90_A0A1Q6RL97	Mtd_N domain-containing protein	NA
UHGV-1957147_39	eggNOG-mapper	696281.Desru_3489	exo-alpha-(2->6)-sialidase activity	NA
UHGV-1957147_39	Pfam	PF18454	Major tropism determinant N-terminal domain	Mtd_N
UHGV-1957147_39	COG	COG4409	Neuraminidase (sialidase) NanH, contains C-terminal autotransporter domain	NA
UHGV-1957147_39	Structural annotation	PF18454	NA	NA
UHGV-1957147_40	PHROG	phrog_31660	tail fiber protein	tail
UHGV-1957147_40	UniRef90	UniRef90_A0A1Q6RLA5	Mtd_N domain-containing protein	NA
UHGV-1957147_40	eggNOG-mapper	13690.CP98_04983	NA	NA
UHGV-1957147_40	Pfam	PF18454	Major tropism determinant N-terminal domain	Mtd_N
UHGV-1957147_41	PHROG	phrog_5302	tail protein	tail
UHGV-1957147_41	UniRef90	UniRef90_UPI001951D0C2	fibronectin type III domain-containing protein	NA
UHGV-1957147_41	eggNOG-mapper	665950.HMPREF1025_01337	Phage tail-collar fibre protein	NA
UHGV-1957147_41	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-1957147_41	Structural annotation	COG1262	NA	NA
UHGV-1957147_42	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-1957147_42	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-1957147_42	UniRef90	UniRef90_A0A1Q6RLC1	Reverse transcriptase domain-containing protein	NA
UHGV-1957147_42	eggNOG-mapper	755164.D6PSR5_9CAUD	RNA-directed DNA polymerase activity	NA
UHGV-1957147_42	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-1957147_42	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-1957147_42	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-1957147_43	PHROG	phrog_4105	NA	unknown function
UHGV-1957147_43	eggNOG-mapper	397288.C806_00056	NA	NA
UHGV-1957147_44	PHROG	phrog_13712	holin	lysis
UHGV-1957147_44	eggNOG-mapper	796940.HMPREF9628_01284	NA	NA
UHGV-1957147_44	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-1957147_46	Structural annotation	PF08797	NA	NA
UHGV-1957147_47	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1957147_47	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1957147_47	UniRef90	UniRef90_A0A1Q6RLA9	HTH cro/C1-type domain-containing protein	NA
UHGV-1957147_47	eggNOG-mapper	663278.Ethha_2393	SMART helix-turn-helix domain protein	NA
UHGV-1957147_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1957147_47	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1957147_47	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA