UHGV-1957382

Genome information

Genome length 36,379 bps

CDS count 67

Completeness 96.99% (high-quality)

geNomad score 0.9761

Prediction confidence Confident

Genome information
Genome ID	UHGV-1957382
vOTU ID	vOTU-010421
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300008361\|Ga0115082_100006\|provirus_209436_245814
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.99% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9761
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.92
Jumbo phage	No

Genome content
Genome length	36,379 bps
GC content	27.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	90.26%
Average CDS length	494.42 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1957382_1	PHROG	phrog_1123	NA	unknown function
UHGV-1957382_1	UniRef90	UniRef90_A0A357WV62	DNA gyrase	NA
UHGV-1957382_1	eggNOG-mapper	1308863.U5J9F3_9CAUD	NA	NA
UHGV-1957382_1	Structural annotation	PF03551, TIGR02719, COG1695	NA	NA
UHGV-1957382_2	KOfam	K07491	rayT; REP-associated tyrosine transposase	NA
UHGV-1957382_2	UniRef90	UniRef90_R6H7E5	Y1_Tnp domain-containing protein	NA
UHGV-1957382_2	eggNOG-mapper	500632.CLONEX_03649	Transposase IS200 like	NA
UHGV-1957382_2	Pfam	PF01797	Transposase IS200 like	Y1_Tnp
UHGV-1957382_2	COG	COG1943	REP element-mobilizing transposase RayT	NA
UHGV-1957382_4	eggNOG-mapper	1227268.HMPREF1552_00029	NA	NA
UHGV-1957382_5	PHROG	phrog_10390	NA	unknown function
UHGV-1957382_5	UniRef90	UniRef90_A0A316PBQ3	NA	NA
UHGV-1957382_5	eggNOG-mapper	679192.HMPREF9013_1310	NA	NA
UHGV-1957382_5	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-1957382_5	COG	COG3600	NA	NA
UHGV-1957382_5	Structural annotation	PF13274, COG3600	NA	NA
UHGV-1957382_6	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1957382_6	PHROG	phrog_9611	endolysin	lysis
UHGV-1957382_6	UniRef90	UniRef90_R6H5X6	N-acetylmuramyl-L-alanine amidase negative regulator of AmpC AmpD	NA
UHGV-1957382_6	eggNOG-mapper	642492.Clole_0841	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-1957382_6	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1957382_6	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1957382_6	Structural annotation	PF01510, PF20780, MF_04111, NF008758, COG5632	NA	NA
UHGV-1957382_7	PHROG	phrog_9233	holin	lysis
UHGV-1957382_7	UniRef90	UniRef90_UPI00189D3A4F	phage holin	NA
UHGV-1957382_7	eggNOG-mapper	476272.RUMHYD_01966	Putative phage holin Dp-1	NA
UHGV-1957382_7	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-1957382_7	Structural annotation	PF16938	NA	NA
UHGV-1957382_10	Structural annotation	PF00386, NF033147	NA	NA
UHGV-1957382_12	PHROG	phrog_5555	tail protein	tail
UHGV-1957382_12	eggNOG-mapper	1234593.ANBY01000020_gene1318	DNA recombination	NA
UHGV-1957382_12	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-1957382_12	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-1957382_13	PHROG	phrog_5668	tail fiber protein	tail
UHGV-1957382_13	eggNOG-mapper	469596.HMPREF9488_01330	NA	NA
UHGV-1957382_14	eggNOG-mapper	469596.HMPREF9488_01330	NA	NA
UHGV-1957382_15	PHROG	phrog_1194	NA	unknown function
UHGV-1957382_15	Structural annotation	PF20458, TIGR01633, COG4718	NA	NA
UHGV-1957382_16	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1957382_16	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-1957382_16	eggNOG-mapper	1280692.AUJL01000027_gene2150	phage tail tape measure protein	NA
UHGV-1957382_16	Pfam	PF05017	TMP repeat	TMP
UHGV-1957382_16	COG	COG1511	NA	NA
UHGV-1957382_16	Structural annotation	PF09486, TIGR02559	NA	NA
UHGV-1957382_17	PHROG	phrog_706	NA	unknown function
UHGV-1957382_17	UniRef90	UniRef90_UPI00067E77F7	Gp15 family bacteriophage protein	NA
UHGV-1957382_17	eggNOG-mapper	469596.HMPREF9488_01327	Bacteriophage Gp15 protein	NA
UHGV-1957382_17	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1957382_17	Structural annotation	PF06854	NA	NA
UHGV-1957382_19	PHROG	phrog_2700	NA	unknown function
UHGV-1957382_19	UniRef90	UniRef90_UPI00155871B4	SHOCT domain-containing protein	NA
UHGV-1957382_19	eggNOG-mapper	1114972.AUAW01000005_gene253	Short C-terminal domain	NA
UHGV-1957382_19	Pfam	PF14472	NA	DUF4429
UHGV-1957382_20	PHROG	phrog_3099	NA	unknown function
UHGV-1957382_20	eggNOG-mapper	645991.Sgly_0346	NA	NA
UHGV-1957382_20	Structural annotation	PF09393, TIGR02126, COG5437	NA	NA
UHGV-1957382_21	PHROG	phrog_3266	tail completion	connector
UHGV-1957382_21	UniRef90	UniRef90_A0A416DT59	Chloramphenicol resistance protein	NA
UHGV-1957382_21	eggNOG-mapper	1292035.H476_1010	NA	NA
UHGV-1957382_21	Structural annotation	PF12691	NA	NA
UHGV-1957382_22	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1957382_22	UniRef90	UniRef90_A0A174E6U4	Minor capsid	NA
UHGV-1957382_22	eggNOG-mapper	1304866.K413DRAFT_3041	NA	NA
UHGV-1957382_22	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1957382_22	Structural annotation	PF11114	NA	NA
UHGV-1957382_23	PHROG	phrog_3366	NA	unknown function
UHGV-1957382_23	eggNOG-mapper	883114.HMPREF9709_01191	NA	NA
UHGV-1957382_23	Pfam	PF20536	NA	DUF6751
UHGV-1957382_23	Structural annotation	PF20536, COG5614	NA	NA
UHGV-1957382_24	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1957382_24	eggNOG-mapper	411470.RUMGNA_02220	NA	NA
UHGV-1957382_25	eggNOG-mapper	33035.JPJF01000030_gene2294	NA	NA
UHGV-1957382_25	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1957382_27	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1957382_27	UniRef90	UniRef90_R5XZV2	Protein gp4	NA
UHGV-1957382_27	eggNOG-mapper	1160721.RBI_I01634	NA	NA
UHGV-1957382_27	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1957382_27	Pfam	PF18810	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2	PBECR2
UHGV-1957382_27	Structural annotation	PF06152, PF21814	NA	NA
UHGV-1957382_28	PHROG	phrog_533	portal protein	head and packaging
UHGV-1957382_28	UniRef90	UniRef90_UPI001F061150	phage portal protein	NA
UHGV-1957382_28	eggNOG-mapper	428127.EUBDOL_01228	phage minor capsid protein	NA
UHGV-1957382_28	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1957382_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1957382_29	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1957382_29	UniRef90	UniRef90_A0A2T3FZ43	PBSX family phage terminase large subunit	NA
UHGV-1957382_29	eggNOG-mapper	428127.EUBDOL_01229	Phage terminase, large subunit, PBSX family	NA
UHGV-1957382_29	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1957382_29	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1957382_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-1957382_29	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1957382_30	PHROG	phrog_2412	NA	unknown function
UHGV-1957382_30	UniRef90	UniRef90_R5AAQ5	NA	NA
UHGV-1957382_30	eggNOG-mapper	226185.EF_2113	Stress-induced bacterial acidophilic repeat motif	NA
UHGV-1957382_32	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1957382_32	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-1957382_34	Structural annotation	PF09871, TIGR00739	NA	NA
UHGV-1957382_35	KOfam	K14415	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	NA
UHGV-1957382_35	PHROG	phrog_1075	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UHGV-1957382_35	UniRef90	UniRef90_A0A843GTF7	RNA-splicing ligase RtcB	NA
UHGV-1957382_35	eggNOG-mapper	1294142.CINTURNW_1879	tRNA-splicing ligase RtcB	NA
UHGV-1957382_35	Pfam	PF01139	tRNA-splicing ligase RtcB	RtcB
UHGV-1957382_35	COG	COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	NA
UHGV-1957382_35	Structural annotation	PF01139, MF_03144, NF007153, COG1690	NA	NA
UHGV-1957382_38	PHROG	phrog_4074	NA	unknown function
UHGV-1957382_38	UniRef90	UniRef90_V7HYF3	Putative bacteriophage protein	NA
UHGV-1957382_38	eggNOG-mapper	1232430.CAVG010000115_gene1032	NA	NA
UHGV-1957382_39	eggNOG-mapper	1304866.K413DRAFT_4602	NA	NA
UHGV-1957382_42	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1957382_42	eggNOG-mapper	1304880.JAGB01000002_gene2229	NA	NA
UHGV-1957382_42	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-1957382_45	PHROG	phrog_1123	NA	unknown function
UHGV-1957382_45	eggNOG-mapper	1308863.U5J9F3_9CAUD	NA	NA
UHGV-1957382_45	Structural annotation	PF03551, TIGR02719, COG1695	NA	NA
UHGV-1957382_47	PHROG	phrog_1408	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1957382_47	UniRef90	UniRef90_UPI001BEF2287	Phage replisome organizer N-terminal domain-containing protein	NA
UHGV-1957382_47	eggNOG-mapper	632292.Calhy_0413	NA	NA
UHGV-1957382_47	Structural annotation	PF01475, TIGR01610, COG0735	NA	NA
UHGV-1957382_49	PHROG	phrog_7566	NA	unknown function
UHGV-1957382_49	eggNOG-mapper	508419.F8J187_9CAUD	NA	NA
UHGV-1957382_50	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1957382_50	eggNOG-mapper	508419.F8J186_9CAUD	NA	NA
UHGV-1957382_50	Structural annotation	PF05772, NF007281	NA	NA
UHGV-1957382_51	PHROG	phrog_14970	NA	unknown function
UHGV-1957382_51	UniRef90	UniRef90_A0A3P6JH63	Essential recombination function protein	NA
UHGV-1957382_51	eggNOG-mapper	411470.RUMGNA_02193	double-strand break repair protein	NA
UHGV-1957382_51	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-1957382_51	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-1957382_53	Structural annotation	PF09943, COG3461	NA	NA
UHGV-1957382_58	PHROG	phrog_3292	NA	unknown function
UHGV-1957382_58	UniRef90	UniRef90_A0A1A9SD76	KTSC domain-containing protein	NA
UHGV-1957382_58	eggNOG-mapper	1121342.AUCO01000012_gene1704	KTSC domain	NA
UHGV-1957382_58	Pfam	PF13619	KTSC domain	KTSC
UHGV-1957382_58	COG	COG0433	Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains	NA
UHGV-1957382_58	Structural annotation	PF13619	NA	NA
UHGV-1957382_59	PHROG	phrog_4621	NA	unknown function
UHGV-1957382_59	eggNOG-mapper	1415774.U728_1126	NA	NA
UHGV-1957382_61	eggNOG-mapper	575594.ACOH01000003_gene935	NA	NA
UHGV-1957382_63	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1957382_63	UniRef90	UniRef90_UPI001AA0E8C2	helix-turn-helix transcriptional regulator	NA
UHGV-1957382_63	eggNOG-mapper	936375.HMPREF1152_1045	Helix-turn-helix XRE-family like proteins	NA
UHGV-1957382_63	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1957382_63	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1957382_63	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1957382_64	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1957382_64	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1957382_64	UniRef90	UniRef90_A0A1Q6M1Z8	HTH cro/C1-type domain-containing protein	NA
UHGV-1957382_64	eggNOG-mapper	411490.ANACAC_00815	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-1957382_64	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1957382_64	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1957382_64	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1957382_64	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-1957382_65	PHROG	phrog_10934	NA	unknown function
UHGV-1957382_65	eggNOG-mapper	632245.CLP_1672	NA	NA
UHGV-1957382_66	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-1957382_66	PHROG	phrog_8036	NA	unknown function
UHGV-1957382_66	UniRef90	UniRef90_A0A354MCJ4	DNA damage-inducible protein D	NA
UHGV-1957382_66	eggNOG-mapper	1131462.DCF50_p2453	NA	NA
UHGV-1957382_66	AcrCatalog	cluster_17589	NA	NA
UHGV-1957382_66	PADLOC	Specificity_I_00032	Type I specificity subunit	RM
UHGV-1957382_66	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1957382_66	NCBIFam	NF008573.0	DNA damage-inducible protein D	NA
UHGV-1957382_66	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-1957382_66	Structural annotation	PF09669, NF008573, COG3646	NA	NA
UHGV-1957382_67	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1957382_67	PHROG	phrog_95	integrase	integration and excision
UHGV-1957382_67	UniRef90	UniRef90_R7FHL4	Phage site-specific recombinase	NA
UHGV-1957382_67	eggNOG-mapper	1151292.QEW_0309	Resolvase, N terminal domain	NA
UHGV-1957382_67	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1957382_67	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1957382_67	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1957382_67	Structural annotation	PF00239, NF041201, COG1961	NA	NA