UHGV-1957555

Genome information

Genome length 36,894 bps

CDS count 47

Completeness 90.13% (high-quality)

geNomad score 0.9755

Prediction confidence Confident

Genome information
Genome ID	UHGV-1957555
vOTU ID	vOTU-013750
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300008571\|Ga0111077_100271\|provirus_13154_50047
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.13% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9755
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.38
Jumbo phage	No

Genome content
Genome length	36,894 bps
GC content	60.33%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	95.01%
Average CDS length	748.28 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1957555_1	KOfam	K14059	int; integrase	NA
UHGV-1957555_1	PHROG	phrog_1	integrase	integration and excision
UHGV-1957555_1	UniRef90	UniRef90_UPI001D0E1DE1	tyrosine-type recombinase/integrase	NA
UHGV-1957555_1	eggNOG-mapper	693746.OBV_25530	Phage integrase family	NA
UHGV-1957555_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1957555_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1957555_1	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-1957555_2	KOfam	K07448	mrr; restriction system protein	NA
UHGV-1957555_2	PHROG	phrog_19856	NA	unknown function
UHGV-1957555_2	UniRef90	UniRef90_R9KQA1	Ftsk_gamma domain-containing protein	NA
UHGV-1957555_2	eggNOG-mapper	411459.RUMOBE_01428	Restriction endonuclease	NA
UHGV-1957555_2	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-1957555_2	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-1957555_2	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-1957555_3	PHROG	phrog_87	metallo-protease	other
UHGV-1957555_3	UniRef90	UniRef90_A0A329UQ57	Peptidase_M78 domain-containing protein	NA
UHGV-1957555_3	eggNOG-mapper	1507.HMPREF0262_00423	IrrE N-terminal-like domain	NA
UHGV-1957555_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1957555_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1957555_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1957555_4	UniRef90	UniRef90_A0A372V3Y4	XRE family transcriptional regulator	NA
UHGV-1957555_4	eggNOG-mapper	411483.FAEPRAA2165_00756	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-1957555_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1957555_4	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1957555_4	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-1957555_5	UniRef90	UniRef90_A0A372V3V8	XRE family transcriptional regulator	NA
UHGV-1957555_5	Structural annotation	PF10078, NF040507, COG3655	NA	NA
UHGV-1957555_6	UniRef90	UniRef90_A0A367GIH6	HTH cro/C1-type domain-containing protein	NA
UHGV-1957555_6	eggNOG-mapper	762051.LKI_01980	NA	NA
UHGV-1957555_6	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-1957555_6	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-1957555_8	Structural annotation	PF12957	NA	NA
UHGV-1957555_12	PHROG	phrog_1733	NA	unknown function
UHGV-1957555_12	UniRef90	UniRef90_UPI00196846D9	cell envelope integrity protein TolA	NA
UHGV-1957555_12	eggNOG-mapper	665956.HMPREF1032_03597	DNA binding	NA
UHGV-1957555_12	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1957555_12	Structural annotation	PF03677	NA	NA
UHGV-1957555_13	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-1957555_13	PHROG	phrog_1499	NA	unknown function
UHGV-1957555_13	UniRef90	UniRef90_A0A367GHQ5	Chromosome segregation protein SMC	NA
UHGV-1957555_13	eggNOG-mapper	1235798.C817_04766	AAA ATPase domain	NA
UHGV-1957555_13	Pfam	PF13476	AAA domain	AAA_23
UHGV-1957555_13	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1957555_13	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-1957555_14	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1957555_14	UniRef90	UniRef90_UPI00195F22B3	AAA family ATPase	NA
UHGV-1957555_14	eggNOG-mapper	608534.GCWU000341_02312	AAA domain	NA
UHGV-1957555_14	Pfam	PF13479	AAA domain	AAA_24
UHGV-1957555_14	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-1957555_15	PHROG	phrog_2698	NA	unknown function
UHGV-1957555_15	UniRef90	UniRef90_UPI001959AB0F	NA	NA
UHGV-1957555_15	eggNOG-mapper	394503.Ccel_3308	NA	NA
UHGV-1957555_15	Structural annotation	PF05037	NA	NA
UHGV-1957555_16	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-1957555_16	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1957555_16	UniRef90	UniRef90_A0A367GH68	DEAD/DEAH box helicase	NA
UHGV-1957555_16	eggNOG-mapper	610130.Closa_1369	DEAD-like helicases superfamily	NA
UHGV-1957555_16	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-1957555_16	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-1957555_16	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1957555_16	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-1957555_16	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-1957555_17	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-1957555_17	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-1957555_17	UniRef90	UniRef90_A0A367GFF7	DNA primase	NA
UHGV-1957555_17	eggNOG-mapper	1232449.BAHV02000008_gene621	Primase C terminal 2 (PriCT-2)	NA
UHGV-1957555_17	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-1957555_17	Pfam	PF13481	AAA domain	AAA_25
UHGV-1957555_17	COG	COG3598	RecA-family ATPase	NA
UHGV-1957555_17	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-1957555_18	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1957555_18	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1957555_18	UniRef90	UniRef90_UPI001958985E	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1957555_18	eggNOG-mapper	478749.BRYFOR_07588	endodeoxyribonuclease RusA	NA
UHGV-1957555_18	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1957555_18	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1957555_18	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1957555_21	eggNOG-mapper	1297617.JPJD01000059_gene2640	NA	NA
UHGV-1957555_21	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-1957555_22	KOfam	K07403	nfeD; membrane-bound serine protease (ClpP class)	NA
UHGV-1957555_22	PHROG	phrog_11747	NA	unknown function
UHGV-1957555_22	UniRef90	UniRef90_A0A2A7BGV4	Serine protease	NA
UHGV-1957555_22	eggNOG-mapper	1158602.I590_03017	Serine dehydrogenase proteinase	NA
UHGV-1957555_22	Pfam	PF01972	Serine dehydrogenase proteinase	SDH_sah
UHGV-1957555_22	COG	COG0616	Periplasmic serine protease, ClpP class	NA
UHGV-1957555_22	Structural annotation	PF01972, MF_00444, TIGR00706, COG0740	NA	NA
UHGV-1957555_23	PHROG	phrog_2412	NA	unknown function
UHGV-1957555_23	eggNOG-mapper	742738.HMPREF9460_02504	NA	NA
UHGV-1957555_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1957555_24	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1957555_24	UniRef90	UniRef90_A0A367GH60	PBSX family phage terminase large subunit	NA
UHGV-1957555_24	eggNOG-mapper	1120746.CCNL01000014_gene2093	DNA packaging	NA
UHGV-1957555_24	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1957555_24	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-1957555_24	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1957555_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-1957555_25	PHROG	phrog_533	portal protein	head and packaging
UHGV-1957555_25	UniRef90	UniRef90_A0A367GFE3	Capsid protein	NA
UHGV-1957555_25	eggNOG-mapper	663278.Ethha_0090	NA	NA
UHGV-1957555_25	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1957555_26	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1957555_26	UniRef90	UniRef90_A0A1C5NZK4	Phage minor capsid protein 2	NA
UHGV-1957555_26	eggNOG-mapper	718252.FP2_06690	NA	NA
UHGV-1957555_26	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1957555_26	COG	COG2369	NA	NA
UHGV-1957555_26	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-1957555_28	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1957555_28	UniRef90	UniRef90_E6U604	Minor structural GP20 protein	NA
UHGV-1957555_28	eggNOG-mapper	663278.Ethha_0093	NA	NA
UHGV-1957555_28	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1957555_28	Structural annotation	PF06810	NA	NA
UHGV-1957555_29	PHROG	phrog_10	major head protein	head and packaging
UHGV-1957555_29	UniRef90	UniRef90_A0A367GHJ2	Phage major capsid protein	NA
UHGV-1957555_29	eggNOG-mapper	663278.Ethha_0496	Phage capsid family	NA
UHGV-1957555_29	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1957555_29	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1957555_29	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1957555_29	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1957555_30	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1957555_31	eggNOG-mapper	411471.SUBVAR_06991	NA	NA
UHGV-1957555_31	Pfam	PF20536	NA	DUF6751
UHGV-1957555_31	Structural annotation	PF20536, COG1853	NA	NA
UHGV-1957555_32	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1957555_32	UniRef90	UniRef90_UPI001958E7C1	minor capsid protein	NA
UHGV-1957555_32	eggNOG-mapper	665956.HMPREF1032_03062	Minor capsid protein	NA
UHGV-1957555_32	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1957555_32	Structural annotation	PF11114	NA	NA
UHGV-1957555_33	PHROG	phrog_3266	tail completion	connector
UHGV-1957555_33	Structural annotation	PF12691	NA	NA
UHGV-1957555_34	PHROG	phrog_3099	NA	unknown function
UHGV-1957555_34	eggNOG-mapper	411471.SUBVAR_06936	NA	NA
UHGV-1957555_34	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1957555_35	PHROG	phrog_11299	NA	unknown function
UHGV-1957555_35	eggNOG-mapper	665956.HMPREF1032_03059	NA	NA
UHGV-1957555_36	PHROG	phrog_706	NA	unknown function
UHGV-1957555_36	UniRef90	UniRef90_UPI0013141117	Gp15 family bacteriophage protein	NA
UHGV-1957555_36	eggNOG-mapper	665956.HMPREF1032_03058	Bacteriophage Gp15 protein	NA
UHGV-1957555_36	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1957555_36	Structural annotation	PF06854	NA	NA
UHGV-1957555_37	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1957555_37	eggNOG-mapper	665956.HMPREF1032_03628	domain protein	NA
UHGV-1957555_37	COG	COG1511	NA	NA
UHGV-1957555_38	PHROG	phrog_1194	NA	unknown function
UHGV-1957555_38	eggNOG-mapper	1120746.CCNL01000014_gene2106	NA	NA
UHGV-1957555_38	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-1957555_39	PHROG	phrog_13879	NA	unknown function
UHGV-1957555_39	eggNOG-mapper	1120746.CCNL01000014_gene2107	NA	NA
UHGV-1957555_39	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-1957555_40	PHROG	phrog_18725	NA	unknown function
UHGV-1957555_40	eggNOG-mapper	1120746.CCNL01000014_gene2212	NA	NA
UHGV-1957555_41	PHROG	phrog_13589	NA	unknown function
UHGV-1957555_44	KOfam	K07273	acm; lysozyme	NA
UHGV-1957555_44	PHROG	phrog_291	endolysin	lysis
UHGV-1957555_44	UniRef90	UniRef90_A0A1Q6T343	Peptidase_M23 domain-containing protein	NA
UHGV-1957555_44	eggNOG-mapper	411471.SUBVAR_05145	heme binding	NA
UHGV-1957555_44	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-1957555_44	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1957555_44	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-1957555_44	Structural annotation	PF01551, PF01183, NF040883, COG0739, COG3757	NA	NA
UHGV-1957555_45	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-1957555_45	UniRef90	UniRef90_UPI00156F0E9C	NA	NA
UHGV-1957555_45	eggNOG-mapper	411473.RUMCAL_00360	NA	NA
UHGV-1957555_45	Structural annotation	PF14359, COG3613	NA	NA
UHGV-1957555_46	UniRef90	UniRef90_UPI00102F4BEE	CTP synthase	NA
UHGV-1957555_46	eggNOG-mapper	1042156.CXIVA_01580	NA	NA
UHGV-1957555_47	PHROG	phrog_13256	NA	unknown function
UHGV-1957555_47	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA