UHGV-1958707

Genome information

Genome length 23,494 bps

CDS count 35

Completeness 62.84% (medium-quality)

geNomad score 0.9770

Prediction confidence Confident

Genome information
Genome ID	UHGV-1958707
vOTU ID	vOTU-025388
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300008547\|Ga0111055_100076\|provirus_97464_120957
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.84% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9770
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.67
Jumbo phage	No

Genome content
Genome length	23,494 bps
GC content	29.08%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	35
CDS density	89.35%
Average CDS length	603.09 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1958707_2	Structural annotation	PF12651, COG4710	NA	NA
UHGV-1958707_4	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1958707_4	PHROG	phrog_9611	endolysin	lysis
UHGV-1958707_4	UniRef90	UniRef90_UPI0006D1BA1C	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1958707_4	eggNOG-mapper	642492.Clole_0841	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-1958707_4	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1958707_4	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-1958707_4	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1958707_4	Structural annotation	PF01510, PF18342, PF08239, NF040678, NF008758, COG5632	NA	NA
UHGV-1958707_6	PHROG	phrog_9116	tail protein	tail
UHGV-1958707_6	UniRef90	UniRef90_A0A3D1PJI0	Collar domain-containing protein	NA
UHGV-1958707_6	eggNOG-mapper	694427.Palpr_1970	tail collar domain protein	NA
UHGV-1958707_6	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-1958707_6	COG	COG4675	Phage tail collar domain	NA
UHGV-1958707_8	PHROG	phrog_5555	tail protein	tail
UHGV-1958707_8	UniRef90	UniRef90_R7F857	Phage minor structural protein	NA
UHGV-1958707_8	eggNOG-mapper	272562.CA_C0063	Prophage endopeptidase tail	NA
UHGV-1958707_8	COG	COG4926	Phage-related protein	NA
UHGV-1958707_9	PHROG	phrog_6616	tail protein	tail
UHGV-1958707_9	COG	COG4926	Phage-related protein	NA
UHGV-1958707_10	PHROG	phrog_1194	NA	unknown function
UHGV-1958707_10	UniRef90	UniRef90_R7F8R7	Putative phage protein	NA
UHGV-1958707_10	eggNOG-mapper	1280692.AUJL01000027_gene2149	NA	NA
UHGV-1958707_10	Pfam	PF20458	NA	DUF6711
UHGV-1958707_10	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1958707_11	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1958707_11	UniRef90	UniRef90_A0A174SV65	Phage-like protein	NA
UHGV-1958707_11	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-1958707_11	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1958707_11	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-1958707_12	UniRef90	UniRef90_UPI00040B248B	Gp15 family bacteriophage protein	NA
UHGV-1958707_12	eggNOG-mapper	394503.Ccel_3283	Bacteriophage Gp15 protein	NA
UHGV-1958707_12	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1958707_12	Structural annotation	PF06854	NA	NA
UHGV-1958707_13	PHROG	phrog_8300	NA	unknown function
UHGV-1958707_13	eggNOG-mapper	1151292.QEW_2425	NA	NA
UHGV-1958707_13	Structural annotation	PF06896	NA	NA
UHGV-1958707_14	PHROG	phrog_820	major tail protein	tail
UHGV-1958707_14	eggNOG-mapper	33035.JPJF01000093_gene2246	NA	NA
UHGV-1958707_14	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1958707_15	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-1958707_15	eggNOG-mapper	1151292.QEW_2427	NA	NA
UHGV-1958707_15	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-1958707_15	Structural annotation	PF12691, COG5003	NA	NA
UHGV-1958707_16	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1958707_16	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-1958707_17	PHROG	phrog_8710	NA	unknown function
UHGV-1958707_17	eggNOG-mapper	1304866.K413DRAFT_0782	NA	NA
UHGV-1958707_17	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-1958707_18	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1958707_18	eggNOG-mapper	552396.HMPREF0863_01637	NA	NA
UHGV-1958707_20	PHROG	phrog_422	major head protein	head and packaging
UHGV-1958707_20	UniRef90	UniRef90_R7FBE8	Phage major capsid protein	NA
UHGV-1958707_20	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-1958707_20	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1958707_22	PHROG	phrog_10292	NA	unknown function
UHGV-1958707_22	UniRef90	UniRef90_A0A3D2MBJ3	TM2 domain-containing protein	NA
UHGV-1958707_22	eggNOG-mapper	665956.HMPREF1032_00562	TM2 domain	NA
UHGV-1958707_22	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-1958707_22	Pfam	PF05154	TM2 domain	TM2
UHGV-1958707_22	COG	COG2314	NA	NA
UHGV-1958707_22	Structural annotation	PF05154, PF12773, MF_00788, NF003161	NA	NA
UHGV-1958707_23	PHROG	phrog_6473	NA	unknown function
UHGV-1958707_23	eggNOG-mapper	889204.HMPREF9423_0013	NA	NA
UHGV-1958707_24	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1958707_24	UniRef90	UniRef90_A0A8G1TMC4	Minor capsid protein	NA
UHGV-1958707_24	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-1958707_24	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1958707_24	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-1958707_24	Structural annotation	PF06152	NA	NA
UHGV-1958707_25	PHROG	phrog_533	portal protein	head and packaging
UHGV-1958707_25	UniRef90	UniRef90_R7FBF4	Putative phage minor capsid protein	NA
UHGV-1958707_25	eggNOG-mapper	1294142.CINTURNW_1024	NA	NA
UHGV-1958707_25	Structural annotation	PF05133, MF_04120, TIGR01542, COG3567	NA	NA
UHGV-1958707_26	PHROG	phrog_918	NA	unknown function
UHGV-1958707_26	UniRef90	UniRef90_UPI000F4ECE86	NA	NA
UHGV-1958707_26	eggNOG-mapper	1504823.CCMM01000008_gene1021	NA	NA
UHGV-1958707_26	Pfam	PF19791	NA	DUF6275
UHGV-1958707_26	Structural annotation	PF19791	NA	NA
UHGV-1958707_27	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-1958707_27	UniRef90	UniRef90_UPI0013ED9517	NA	NA
UHGV-1958707_27	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-1958707_27	Pfam	PF14359	NA	DUF4406
UHGV-1958707_27	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-1958707_28	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1958707_28	UniRef90	UniRef90_A0A1Q6LGZ0	Terminase	NA
UHGV-1958707_28	eggNOG-mapper	1232449.BAHV02000018_gene1531	Phage terminase, large subunit, PBSX family	NA
UHGV-1958707_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-1958707_28	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1958707_29	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1958707_29	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1958707_29	UniRef90	UniRef90_UPI0001668959	terminase small subunit	NA
UHGV-1958707_29	eggNOG-mapper	536232.CLM_2664	Terminase small subunit	NA
UHGV-1958707_29	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1958707_29	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1958707_29	Structural annotation	PF03592, COG3728	NA	NA