UHGV-1959118

Genome information

Genome length 40,672 bps

CDS count 64

Completeness 99.90% (high-quality)

geNomad score 0.9648

Prediction confidence Confident

Genome information
Genome ID	UHGV-1959118
vOTU ID	vOTU-009044
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300008272\|Ga0111092_1000035\|provirus_123098_163769
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9648
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	59.92
Jumbo phage	No

Genome content
Genome length	40,672 bps
GC content	48.66%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	91.73%
Average CDS length	589.13 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1959118_1	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1959118_1	PHROG	phrog_1	integrase	integration and excision
UHGV-1959118_1	UniRef90	UniRef90_A0A3D1HZV1	Tyr recombinase domain-containing protein	NA
UHGV-1959118_1	eggNOG-mapper	350688.Clos_1827	Belongs to the 'phage' integrase family	NA
UHGV-1959118_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1959118_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1959118_2	KOfam	K14059	int; integrase	NA
UHGV-1959118_2	PHROG	phrog_1	integrase	integration and excision
UHGV-1959118_2	UniRef90	UniRef90_A0A7K4BXA9	Site-specific integrase	NA
UHGV-1959118_2	eggNOG-mapper	693746.OBV_19730	Belongs to the 'phage' integrase family	NA
UHGV-1959118_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1959118_2	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1959118_2	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-1959118_3	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-1959118_3	PHROG	phrog_8036	NA	unknown function
UHGV-1959118_3	UniRef90	UniRef90_A0A1Y4LUW1	DNA damage-inducible protein D	NA
UHGV-1959118_3	eggNOG-mapper	1131462.DCF50_p2453	NA	NA
UHGV-1959118_3	AcrCatalog	cluster_17589	NA	NA
UHGV-1959118_3	PADLOC	Specificity_I_00032	Type I specificity subunit	RM
UHGV-1959118_3	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1959118_3	NCBIFam	NF008573.0	DNA damage-inducible protein D	NA
UHGV-1959118_3	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-1959118_3	Structural annotation	PF09669, NF008573, COG3646	NA	NA
UHGV-1959118_4	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1959118_4	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1959118_4	UniRef90	UniRef90_R5Y1G1	Putative phage repressor	NA
UHGV-1959118_4	eggNOG-mapper	1262914.BN533_00809	Peptidase S24-like	NA
UHGV-1959118_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1959118_4	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1959118_4	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1959118_4	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-1959118_5	UniRef90	UniRef90_A0A348Z948	Transcriptional regulator	NA
UHGV-1959118_5	eggNOG-mapper	1262914.BN533_00808	NA	NA
UHGV-1959118_5	Pfam	PF05339	NA	DUF739
UHGV-1959118_5	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-1959118_7	PHROG	phrog_585	NA	unknown function
UHGV-1959118_7	UniRef90	UniRef90_UPI0018DD361B	NA	NA
UHGV-1959118_7	eggNOG-mapper	438780.D2KRD9_9CAUD	NA	NA
UHGV-1959118_7	Pfam	PF10711	NA	DUF2513
UHGV-1959118_10	PHROG	phrog_6058	NA	unknown function
UHGV-1959118_10	eggNOG-mapper	742738.HMPREF9460_00848	NA	NA
UHGV-1959118_16	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1959118_16	PHROG	phrog_18750	NA	unknown function
UHGV-1959118_16	UniRef90	UniRef90_A0A3D5TM41	Hydrolase_2 domain-containing protein	NA
UHGV-1959118_16	eggNOG-mapper	1203606.HMPREF1526_01876	Cell wall hydrolase	NA
UHGV-1959118_16	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-1959118_16	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-1959118_16	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-1959118_17	PHROG	phrog_924	NA	unknown function
UHGV-1959118_17	eggNOG-mapper	665950.HMPREF1025_02540	NA	NA
UHGV-1959118_17	Pfam	PF04448	NA	DUF551
UHGV-1959118_21	PHROG	phrog_824	NA	unknown function
UHGV-1959118_21	UniRef90	UniRef90_A0A3D5TLJ2	VRR-NUC domain-containing protein	NA
UHGV-1959118_21	eggNOG-mapper	642492.Clole_0728	VRR-NUC domain	NA
UHGV-1959118_21	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-1959118_21	Structural annotation	PF08774, COG1996	NA	NA
UHGV-1959118_22	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1959118_22	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1959118_22	UniRef90	UniRef90_A0A3D1I1E6	ParB domain-containing protein	NA
UHGV-1959118_22	eggNOG-mapper	445972.ANACOL_00162	ParB-like nuclease domain	NA
UHGV-1959118_22	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1959118_22	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-1959118_22	COG	COG0710	3-dehydroquinate dehydratase	NA
UHGV-1959118_22	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-1959118_26	PHROG	phrog_3136	NA	unknown function
UHGV-1959118_26	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-1959118_26	eggNOG-mapper	394503.Ccel_3165	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-1959118_26	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-1959118_26	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-1959118_28	PHROG	phrog_24518	NA	unknown function
UHGV-1959118_28	eggNOG-mapper	693746.OBV_25370	NA	NA
UHGV-1959118_29	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1959118_29	eggNOG-mapper	537013.CLOSTMETH_02141	NA	NA
UHGV-1959118_29	Structural annotation	PF21578, MF_00360	NA	NA
UHGV-1959118_31	PHROG	phrog_8684	NA	unknown function
UHGV-1959118_31	UniRef90	UniRef90_A0A661QKM8	YopX domain-containing protein	NA
UHGV-1959118_31	eggNOG-mapper	742767.HMPREF9456_02048	YopX protein	NA
UHGV-1959118_31	Pfam	PF09643	YopX protein	YopX
UHGV-1959118_31	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-1959118_31	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1959118_32	PHROG	phrog_11237	NA	unknown function
UHGV-1959118_32	eggNOG-mapper	537013.CLOSTMETH_01096	NA	NA
UHGV-1959118_32	Structural annotation	TIGR01636	NA	NA
UHGV-1959118_33	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1959118_33	PHROG	phrog_12862	NA	unknown function
UHGV-1959118_33	UniRef90	UniRef90_UPI000A26DFF4	site-specific DNA-methyltransferase	NA
UHGV-1959118_33	eggNOG-mapper	1120998.AUFC01000030_gene2227	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-1959118_33	PADLOC	MTase_II_00037	Type II methyltransferase	RM
UHGV-1959118_33	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1959118_33	COG	COG0863	DNA modification methylase	NA
UHGV-1959118_33	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-1959118_34	PHROG	phrog_12389	NA	unknown function
UHGV-1959118_34	eggNOG-mapper	693746.OBV_p-00550	NA	NA
UHGV-1959118_35	PHROG	phrog_20533	NA	unknown function
UHGV-1959118_35	UniRef90	UniRef90_A0A7C6U4T3	PLD phosphodiesterase domain-containing protein	NA
UHGV-1959118_35	eggNOG-mapper	1123058.KB894251_gene2369	NA	NA
UHGV-1959118_35	Structural annotation	PF17941, MF_01918, NF010490, COG3886	NA	NA
UHGV-1959118_36	PHROG	phrog_17390	NA	unknown function
UHGV-1959118_36	UniRef90	UniRef90_UPI001E61FF52	terminase small subunit	NA
UHGV-1959118_36	eggNOG-mapper	1158614.I592_02434	Terminase small subunit	NA
UHGV-1959118_36	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1959118_36	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1959118_37	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1959118_37	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1959118_37	UniRef90	UniRef90_R6I0M1	Phage terminase large subunit PBSX family	NA
UHGV-1959118_37	eggNOG-mapper	203119.Cthe_2474	Phage terminase, large subunit, PBSX family	NA
UHGV-1959118_37	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1959118_37	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1959118_37	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1959118_37	COG	COG1783	Phage terminase large subunit	NA
UHGV-1959118_37	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1959118_38	PHROG	phrog_64	portal protein	head and packaging
UHGV-1959118_38	UniRef90	UniRef90_R6IBR5	Phage portal protein	NA
UHGV-1959118_38	eggNOG-mapper	97138.C820_00238	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1959118_38	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1959118_38	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1959118_39	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1959118_39	UniRef90	UniRef90_A0A3D2QEP6	Phage_Mu_F domain-containing protein	NA
UHGV-1959118_39	eggNOG-mapper	1209989.TepiRe1_1146	Phage Mu protein F like protein	NA
UHGV-1959118_39	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1959118_39	Pfam	PF14424	The BURPS668_1122 family of deaminases	Toxin-deaminase
UHGV-1959118_39	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1959118_39	COG	COG2369	NA	NA
UHGV-1959118_41	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1959118_41	UniRef90	UniRef90_UPI001651708C	phage scaffolding protein	NA
UHGV-1959118_41	eggNOG-mapper	1196028.ALEF01000043_gene465	Phage minor structural protein GP20	NA
UHGV-1959118_41	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1959118_42	PHROG	phrog_283	major head protein	head and packaging
UHGV-1959118_42	UniRef90	UniRef90_UPI001896DBE2	P22 coat protein	NA
UHGV-1959118_42	eggNOG-mapper	1297617.JPJD01000059_gene2633	P22 coat protein - gene protein 5	NA
UHGV-1959118_42	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-1959118_42	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1959118_43	PHROG	phrog_132	head-tail adaptor	connector
UHGV-1959118_43	UniRef90	UniRef90_R6I6I7	NA	NA
UHGV-1959118_43	eggNOG-mapper	642492.Clole_2755	NA	NA
UHGV-1959118_44	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1959118_45	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1959118_45	UniRef90	UniRef90_R6IVT6	Bacteriophage protein PF04883 family	NA
UHGV-1959118_45	eggNOG-mapper	1280692.AUJL01000025_gene2076	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1959118_45	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1959118_45	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1959118_45	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1959118_46	Structural annotation	PF05657	NA	NA
UHGV-1959118_47	PHROG	phrog_158	major tail protein	tail
UHGV-1959118_47	UniRef90	UniRef90_R6HYI8	Major tail protein putative	NA
UHGV-1959118_47	eggNOG-mapper	1209989.TepiRe1_1157	Phage tail tube protein, TTP	NA
UHGV-1959118_47	Pfam	PF16461	Lambda phage tail tube protein, TTP	Phage_TTP_12
UHGV-1959118_47	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-1959118_48	UniRef90	UniRef90_UPI0012BCDD8A	NA	NA
UHGV-1959118_48	eggNOG-mapper	1211844.CBLM010000016_gene1484	NA	NA
UHGV-1959118_48	Structural annotation	PF19591	NA	NA
UHGV-1959118_49	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1959118_49	eggNOG-mapper	645991.Sgly_0352	SLT domain	NA
UHGV-1959118_49	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1959118_50	PHROG	phrog_26910	NA	unknown function
UHGV-1959118_50	eggNOG-mapper	1117958.PE143B_0109845	NA	NA
UHGV-1959118_51	PHROG	phrog_1194	NA	unknown function
UHGV-1959118_51	UniRef90	UniRef90_A0A0R1Q5P9	NA	NA
UHGV-1959118_51	eggNOG-mapper	1400520.LFAB_05290	NA	NA
UHGV-1959118_51	Pfam	PF20458	NA	DUF6711
UHGV-1959118_51	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1959118_52	PHROG	phrog_6616	tail protein	tail
UHGV-1959118_52	UniRef90	UniRef90_A0A0J1FXD9	Peptidase S74 domain-containing protein	NA
UHGV-1959118_52	eggNOG-mapper	1294142.CINTURNW_1042	Phage minor structural protein	NA
UHGV-1959118_52	COG	COG4926	Phage-related protein	NA
UHGV-1959118_52	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-1959118_54	Structural annotation	PF10651, NF009453	NA	NA
UHGV-1959118_55	Structural annotation	PF02973	NA	NA
UHGV-1959118_57	PHROG	phrog_27545	NA	unknown function
UHGV-1959118_57	UniRef90	UniRef90_A0A2V2GQB6	Chitin-binding type-3 domain-containing protein	NA
UHGV-1959118_57	eggNOG-mapper	411471.SUBVAR_06976	NA	NA
UHGV-1959118_57	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-1959118_58	PHROG	phrog_1863	NA	unknown function
UHGV-1959118_58	eggNOG-mapper	1235797.C816_02840	NA	NA
UHGV-1959118_59	PHROG	phrog_7698	endolysin	lysis
UHGV-1959118_59	UniRef90	UniRef90_R6IVV6	Possible cell wall-binding protein	NA
UHGV-1959118_59	eggNOG-mapper	525254.HMPREF0072_1273	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-1959118_59	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-1959118_59	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1959118_59	Structural annotation	PF08230	NA	NA
UHGV-1959118_60	PHROG	phrog_608	holin	lysis
UHGV-1959118_60	UniRef90	UniRef90_R6I9L8	Putative phage holin	NA
UHGV-1959118_60	eggNOG-mapper	1121472.AQWN01000009_gene420	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-1959118_60	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-1959118_62	KOfam	K03778	ldhA; D-lactate dehydrogenase [EC:1.1.1.28]	NA
UHGV-1959118_62	PHROG	phrog_26092	NA	unknown function
UHGV-1959118_62	UniRef90	UniRef90_R6I8H0	4-phosphoerythronate dehydrogenase	NA
UHGV-1959118_62	eggNOG-mapper	411463.EUBVEN_01915	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family	NA
UHGV-1959118_62	Pfam	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain	2-Hacid_dh_C
UHGV-1959118_62	COG	COG1052	Lactate dehydrogenase or related 2-hydroxyacid dehydrogenase	NA