UHGV-1961411

Genome information

vOTU vOTU-020734

Genome length 35,491 bps

CDS count 51

Completeness 88.97% (medium-quality)

geNomad score 0.9727

Prediction confidence Confident

Genome information
Genome ID	UHGV-1961411
vOTU ID	vOTU-020734
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300008496\|Ga0115078_100003\|provirus_3_35493
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.97% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9727
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.59
Jumbo phage	No

Genome content
Genome length	35,491 bps
GC content	40.08%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	90.53%
Average CDS length	632.82 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1961411_1	PHROG	phrog_1794	amidase	lysis
UHGV-1961411_1	UniRef90	UniRef90_A0A374NDR7	SH3b domain-containing protein	NA
UHGV-1961411_1	eggNOG-mapper	1519439.JPJG01000059_gene1952	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1961411_1	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-1961411_1	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1961411_2	KOfam	K14059	int; integrase	NA
UHGV-1961411_2	PHROG	phrog_1	integrase	integration and excision
UHGV-1961411_2	UniRef90	UniRef90_A0A412L7T7	Site-specific integrase	NA
UHGV-1961411_2	eggNOG-mapper	1540257.JQMW01000011_gene2033	Phage integrase family	NA
UHGV-1961411_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1961411_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1961411_2	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-1961411_3	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1961411_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1961411_3	UniRef90	UniRef90_A0A374NFM5	XRE family transcriptional regulator	NA
UHGV-1961411_3	eggNOG-mapper	1567011.A0A0A7RUJ5_9VIRU	protein disulfide oxidoreductase activity	NA
UHGV-1961411_3	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1961411_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1961411_3	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1961411_4	Structural annotation	PF15968	NA	NA
UHGV-1961411_5	Structural annotation	PF20505, MF_00194, NF001462, COG2974	NA	NA
UHGV-1961411_6	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1961411_6	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1961411_6	UniRef90	UniRef90_UPI0015F84BF4	XRE family transcriptional regulator	NA
UHGV-1961411_6	eggNOG-mapper	246199.CUS_5911	NA	NA
UHGV-1961411_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1961411_6	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1961411_6	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1961411_6	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, TIGR03070, COG1974, COG1476	NA	NA
UHGV-1961411_7	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-1961411_7	UniRef90	UniRef90_UPI001C11D88B	helix-turn-helix transcriptional regulator	NA
UHGV-1961411_7	eggNOG-mapper	999411.HMPREF1092_00882	Helix-turn-helix	NA
UHGV-1961411_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1961411_7	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-1961411_10	PHROG	phrog_3882	NA	unknown function
UHGV-1961411_13	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-1961411_16	Structural annotation	PF04570, COG2075	NA	NA
UHGV-1961411_17	PHROG	phrog_674	NA	unknown function
UHGV-1961411_17	UniRef90	UniRef90_A0A374N9T8	NA	NA
UHGV-1961411_17	eggNOG-mapper	1408437.JNJN01000039_gene373	NA	NA
UHGV-1961411_17	Pfam	PF07083	NA	DUF1351
UHGV-1961411_17	Structural annotation	PF07083	NA	NA
UHGV-1961411_18	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1961411_18	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1961411_18	UniRef90	UniRef90_A0A374N9W0	Recombinase	NA
UHGV-1961411_18	eggNOG-mapper	428127.EUBDOL_01509	RecT family	NA
UHGV-1961411_18	Pfam	PF03837	RecT family	RecT
UHGV-1961411_18	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1961411_18	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1961411_18	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-1961411_19	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-1961411_19	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1961411_19	UniRef90	UniRef90_A0A373XYI8	MBL fold metallo-hydrolase	NA
UHGV-1961411_19	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-1961411_19	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-1961411_19	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1961411_19	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-1961411_20	PHROG	phrog_398	NA	unknown function
UHGV-1961411_20	UniRef90	UniRef90_UPI001E5E0390	putative HNHc nuclease	NA
UHGV-1961411_20	eggNOG-mapper	293826.Amet_2584	Putative HNHc nuclease	NA
UHGV-1961411_20	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-1961411_20	Structural annotation	PF16784	NA	NA
UHGV-1961411_21	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1961411_21	UniRef90	UniRef90_A0A374NA85	NA	NA
UHGV-1961411_21	eggNOG-mapper	1235790.C805_00030	NA	NA
UHGV-1961411_21	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-1961411_21	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1961411_21	Structural annotation	PF14297	NA	NA
UHGV-1961411_22	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1961411_22	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1961411_22	UniRef90	UniRef90_A0A374MYR7	IstB_IS21 domain-containing protein	NA
UHGV-1961411_22	eggNOG-mapper	1507.HMPREF0262_00302	Bacterial dnaA protein	NA
UHGV-1961411_22	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-1961411_22	COG	COG1484	DNA replication protein DnaC	NA
UHGV-1961411_22	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-1961411_23	PHROG	phrog_824	NA	unknown function
UHGV-1961411_23	UniRef90	UniRef90_A0A374MXE9	VRR-NUC domain-containing protein	NA
UHGV-1961411_23	eggNOG-mapper	1235792.C808_00622	VRR_NUC	NA
UHGV-1961411_23	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-1961411_23	Structural annotation	PF08774	NA	NA
UHGV-1961411_25	Structural annotation	PF05129	NA	NA
UHGV-1961411_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1961411_28	UniRef90	UniRef90_A0A2N0UXQ6	NA	NA
UHGV-1961411_28	eggNOG-mapper	1401067.HMPREF0872_06835	NA	NA
UHGV-1961411_28	Pfam	PF07374	NA	DUF1492
UHGV-1961411_28	Structural annotation	PF07374, MF_00674, TIGR01636, COG2739	NA	NA
UHGV-1961411_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1961411_29	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1961411_29	UniRef90	UniRef90_A0A2N0ULW5	Phage terminase, large subunit, PBSX family	NA
UHGV-1961411_29	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-1961411_29	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1961411_29	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1961411_29	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1961411_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-1961411_29	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1961411_30	PHROG	phrog_533	portal protein	head and packaging
UHGV-1961411_30	UniRef90	UniRef90_A0A2N0ULU9	Phage portal protein, putative, A118 family	NA
UHGV-1961411_30	eggNOG-mapper	1304866.K413DRAFT_3035	NA	NA
UHGV-1961411_30	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1961411_31	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1961411_31	UniRef90	UniRef90_A0A2N0ULU5	Putative ADP-ribosyltransferase Certhrax	NA
UHGV-1961411_31	eggNOG-mapper	411470.RUMGNA_02213	Phage minor capsid protein 2	NA
UHGV-1961411_31	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1961411_31	COG	COG2369	NA	NA
UHGV-1961411_31	Structural annotation	PF06152, PF15887, TIGR01641, COG4307	NA	NA
UHGV-1961411_32	PHROG	phrog_2616	NA	unknown function
UHGV-1961411_32	Structural annotation	PF01281	NA	NA
UHGV-1961411_33	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1961411_33	UniRef90	UniRef90_A0A2N0ULW9	Phage minor structural protein GP20	NA
UHGV-1961411_33	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-1961411_33	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1961411_33	Structural annotation	PF06810	NA	NA
UHGV-1961411_34	PHROG	phrog_422	major head protein	head and packaging
UHGV-1961411_34	eggNOG-mapper	693746.OBV_18090	NA	NA
UHGV-1961411_34	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-1961411_35	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1961411_35	UniRef90	UniRef90_A0A371AQT0	NA	NA
UHGV-1961411_35	eggNOG-mapper	1449050.JNLE01000003_gene3888	NA	NA
UHGV-1961411_36	PHROG	phrog_3366	NA	unknown function
UHGV-1961411_36	eggNOG-mapper	1449050.JNLE01000003_gene3887	NA	NA
UHGV-1961411_36	Pfam	PF20536	NA	DUF6751
UHGV-1961411_36	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-1961411_37	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1961411_37	UniRef90	UniRef90_UPI00189BC4F9	minor capsid protein	NA
UHGV-1961411_37	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-1961411_37	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1961411_37	Structural annotation	PF11114	NA	NA
UHGV-1961411_38	PHROG	phrog_3266	tail completion	connector
UHGV-1961411_38	eggNOG-mapper	1449050.JNLE01000003_gene3885	NA	NA
UHGV-1961411_38	Structural annotation	PF20765	NA	NA
UHGV-1961411_39	PHROG	phrog_3099	NA	unknown function
UHGV-1961411_39	eggNOG-mapper	1160721.RBI_II00532	NA	NA
UHGV-1961411_39	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1961411_40	PHROG	phrog_11299	NA	unknown function
UHGV-1961411_40	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-1961411_40	Structural annotation	PF10666	NA	NA
UHGV-1961411_41	PHROG	phrog_706	NA	unknown function
UHGV-1961411_41	UniRef90	UniRef90_A0A2N0ULW2	Bacteriophage Gp15 protein	NA
UHGV-1961411_41	eggNOG-mapper	1160721.RBI_II00530	Bacteriophage Gp15 protein	NA
UHGV-1961411_41	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1961411_41	Structural annotation	PF06854	NA	NA
UHGV-1961411_43	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1961411_43	UniRef90	UniRef90_A0A2N0ULX3	Phage-related protein	NA
UHGV-1961411_43	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-1961411_43	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1961411_43	Structural annotation	PF20155, COG3941	NA	NA
UHGV-1961411_44	PHROG	phrog_1194	NA	unknown function
UHGV-1961411_44	eggNOG-mapper	397290.C810_05238	NA	NA
UHGV-1961411_44	Pfam	PF20458	NA	DUF6711
UHGV-1961411_44	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-1961411_45	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-1961411_46	UniRef90	UniRef90_A0A374N9Y2	NA	NA
UHGV-1961411_46	Structural annotation	PF01664	NA	NA
UHGV-1961411_48	PHROG	phrog_199	holin	lysis
UHGV-1961411_48	UniRef90	UniRef90_A0A2N0ULW7	Holin	NA
UHGV-1961411_48	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-1961411_48	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1961411_48	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1961411_48	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1961411_48	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1961411_49	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1961411_49	PHROG	phrog_435	endolysin	lysis
UHGV-1961411_49	UniRef90	UniRef90_A0A413QH71	MurNAc-LAA domain-containing protein	NA
UHGV-1961411_49	eggNOG-mapper	1384066.JAGT01000001_gene130	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1961411_49	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1961411_49	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1961411_50	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-1961411_50	PHROG	phrog_56	DNA methyltransferase	other
UHGV-1961411_50	UniRef90	UniRef90_A0A1C6HHY1	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-1961411_50	eggNOG-mapper	742733.HMPREF9469_02855	COG COG0338 Site-specific DNA methylase	NA
UHGV-1961411_50	PADLOC	MTase_II_00080	Type II methyltransferase	RM
UHGV-1961411_50	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-1961411_50	NCBIFam	TIGR00571.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA
UHGV-1961411_50	COG	COG0338	DNA-adenine methylase	NA
UHGV-1961411_50	Structural annotation	PF02086, MF_00934, TIGR00571, COG0338	NA	NA
UHGV-1961411_51	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-1961411_51	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-1961411_51	UniRef90	UniRef90_A0A413QHG2	XRE family transcriptional regulator	NA
UHGV-1961411_51	eggNOG-mapper	411471.SUBVAR_07446	helix-turn-helix	NA
UHGV-1961411_51	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1961411_51	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-1961411_51	Structural annotation	PF13443, NF041951, COG3655	NA	NA