UHGV-1961696

Genome information

Genome length 40,950 bps

CDS count 55

Completeness 99.90% (high-quality)

geNomad score 0.9683

Prediction confidence Confident

Genome information
Genome ID	UHGV-1961696
vOTU ID	vOTU-011297
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300014539\|Ga0169882_100001\|provirus_273024_313973
BioSample	SAMEA2580294
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	26
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9683
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	58.92
Jumbo phage	No

Genome content
Genome length	40,950 bps
GC content	38.22%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	89.45%
Average CDS length	671.46 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1961696_1	UniRef90	UniRef90_UPI00143288D7	NA	NA
UHGV-1961696_1	eggNOG-mapper	1158601.I585_01196	NA	NA
UHGV-1961696_1	Pfam	PF16729	NA	DUF5067
UHGV-1961696_2	UniRef90	UniRef90_UPI000271DCAC	NA	NA
UHGV-1961696_2	eggNOG-mapper	565655.ECBG_00367	NA	NA
UHGV-1961696_2	Pfam	PF19385	NA	DUF5960
UHGV-1961696_2	Structural annotation	PF19385	NA	NA
UHGV-1961696_4	UniRef90	UniRef90_C9CIK0	Predicted protein	NA
UHGV-1961696_4	eggNOG-mapper	565653.EGBG_01661	NA	NA
UHGV-1961696_4	Structural annotation	PF18914, NF009730	NA	NA
UHGV-1961696_5	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-1961696_5	UniRef90	UniRef90_UPI001AD70F02	Abi family protein	NA
UHGV-1961696_5	eggNOG-mapper	1140001.I571_02125	Abi-like protein	NA
UHGV-1961696_5	PADLOC	AbiD	AbiD	Abi
UHGV-1961696_5	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-1961696_5	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-1961696_5	Structural annotation	PF07751, COG4823	NA	NA
UHGV-1961696_6	PHROG	phrog_18591	NA	unknown function
UHGV-1961696_6	eggNOG-mapper	397291.C804_06305	NA	NA
UHGV-1961696_7	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1961696_7	PHROG	phrog_2742	endolysin	lysis
UHGV-1961696_7	UniRef90	UniRef90_A0A7U0A1X2	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1961696_7	eggNOG-mapper	1158610.UC3_02332	Ami_2	NA
UHGV-1961696_7	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1961696_7	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1961696_7	Structural annotation	PF01520, PF15591, MF_00562, TIGR02883, NF033202, COG0860	NA	NA
UHGV-1961696_8	PHROG	phrog_608	holin	lysis
UHGV-1961696_8	UniRef90	UniRef90_A0A5F0V7G1	Holin	NA
UHGV-1961696_8	eggNOG-mapper	767817.Desgi_4695	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-1961696_8	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-1961696_8	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-1961696_11	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-1961696_11	PHROG	phrog_5240	tail fiber protein	tail
UHGV-1961696_11	UniRef90	UniRef90_UPI00032E8A56	GDSL-type esterase/lipase family protein	NA
UHGV-1961696_11	eggNOG-mapper	658086.HMPREF0994_06720	GDSL-like Lipase/Acylhydrolase	NA
UHGV-1961696_11	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-1961696_11	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-1961696_12	PHROG	phrog_6616	tail protein	tail
UHGV-1961696_12	UniRef90	UniRef90_UPI0007AE71C3	gp58-like family protein	NA
UHGV-1961696_12	eggNOG-mapper	1449343.JQLQ01000002_gene1509	NA	NA
UHGV-1961696_12	COG	COG4926	Phage-related protein	NA
UHGV-1961696_12	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-1961696_13	PHROG	phrog_1194	NA	unknown function
UHGV-1961696_13	UniRef90	UniRef90_D7RWK1	Gp18	NA
UHGV-1961696_13	eggNOG-mapper	764562.D7RWK1_9CAUD	NA	NA
UHGV-1961696_13	Pfam	PF20458	NA	DUF6711
UHGV-1961696_13	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1961696_14	KOfam	K06240	LAMA3_5; laminin, alpha 3/5	NA
UHGV-1961696_14	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1961696_14	UniRef90	UniRef90_UPI001D177026	transglycosylase SLT domain-containing protein	NA
UHGV-1961696_14	eggNOG-mapper	673837.D2IZU8_9CAUD	peptidoglycan catabolic process	NA
UHGV-1961696_14	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-1961696_15	PHROG	phrog_2066	NA	unknown function
UHGV-1961696_15	UniRef90	UniRef90_D7RWJ9	Gp16	NA
UHGV-1961696_15	eggNOG-mapper	673837.D2IZU7_9CAUD	NA	NA
UHGV-1961696_16	PHROG	phrog_183	tail chaperone protein	tail
UHGV-1961696_16	UniRef90	UniRef90_UPI001BCED2E3	NA	NA
UHGV-1961696_16	eggNOG-mapper	673837.D2IZU6_9CAUD	NA	NA
UHGV-1961696_16	Pfam	PF19591	NA	DUF6096
UHGV-1961696_16	Structural annotation	PF19591, TIGR01674	NA	NA
UHGV-1961696_17	PHROG	phrog_158	major tail protein	tail
UHGV-1961696_17	UniRef90	UniRef90_UPI00129C3846	phage tail protein	NA
UHGV-1961696_17	eggNOG-mapper	420890.LCGL_1123	Phage tail tube protein, TTP	NA
UHGV-1961696_17	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-1961696_18	UniRef90	UniRef90_D7RWJ4	Gp13	NA
UHGV-1961696_18	eggNOG-mapper	416870.llmg_0840	NA	NA
UHGV-1961696_18	Structural annotation	PF05657	NA	NA
UHGV-1961696_19	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1961696_19	UniRef90	UniRef90_A0A494SVR8	HK97 gp10 family phage protein	NA
UHGV-1961696_19	eggNOG-mapper	1229517.AMFD01000023_gene1311	NA	NA
UHGV-1961696_19	Structural annotation	TIGR01725	NA	NA
UHGV-1961696_20	PHROG	phrog_2168	NA	unknown function
UHGV-1961696_20	UniRef90	UniRef90_A0A0R1UW44	NA	NA
UHGV-1961696_20	eggNOG-mapper	420890.LCGL_1126	NA	NA
UHGV-1961696_20	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1961696_21	PHROG	phrog_1161	head-tail adaptor	connector
UHGV-1961696_21	UniRef90	UniRef90_UPI00115474A1	phage head-tail connector protein	NA
UHGV-1961696_21	eggNOG-mapper	416870.llmg_0837	NA	NA
UHGV-1961696_21	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1961696_21	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1961696_22	PHROG	phrog_247	major head protein	head and packaging
UHGV-1961696_22	UniRef90	UniRef90_D2IZU0	Coat protein	NA
UHGV-1961696_22	eggNOG-mapper	673837.D2IZU0_9CAUD	viral capsid	NA
UHGV-1961696_22	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-1961696_22	Structural annotation	PF20036, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-1961696_23	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-1961696_23	UniRef90	UniRef90_A0A4V1JHX6	NA	NA
UHGV-1961696_23	eggNOG-mapper	1158614.I592_02268	NA	NA
UHGV-1961696_23	Pfam	PF14265	NA	DUF4355
UHGV-1961696_23	Structural annotation	PF14265	NA	NA
UHGV-1961696_24	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1961696_24	UniRef90	UniRef90_UPI001432BB51	polymorphic toxin type 50 domain-containing protein	NA
UHGV-1961696_24	eggNOG-mapper	673837.D2IZT8_9CAUD	Phage Mu protein F like protein	NA
UHGV-1961696_24	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1961696_24	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1961696_24	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1961696_25	PHROG	phrog_64	portal protein	head and packaging
UHGV-1961696_25	UniRef90	UniRef90_D2IZT6	Portal protein	NA
UHGV-1961696_25	eggNOG-mapper	673837.D2IZT6_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1961696_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1961696_25	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-1961696_25	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-1961696_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1961696_26	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-1961696_26	UniRef90	UniRef90_A0A4Q0D5V6	PBSX family phage terminase large subunit	NA
UHGV-1961696_26	eggNOG-mapper	1229517.AMFD01000023_gene1320	Terminase-like family	NA
UHGV-1961696_26	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1961696_26	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-1961696_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1961696_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-1961696_26	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1961696_27	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1961696_27	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1961696_27	UniRef90	UniRef90_UPI0011A52CBF	terminase small subunit	NA
UHGV-1961696_27	eggNOG-mapper	1158601.I585_01162	DNA packaging	NA
UHGV-1961696_27	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1961696_27	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1961696_27	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1961696_29	PHROG	phrog_704	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1961696_29	UniRef90	UniRef90_A0A494SRP4	Helix-turn-helix domain-containing protein	NA
UHGV-1961696_29	eggNOG-mapper	1154757.Q5C_03075	NA	NA
UHGV-1961696_29	Structural annotation	PF12850, MF_00905, NF008359, COG2908	NA	NA
UHGV-1961696_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1961696_31	UniRef90	UniRef90_A0A418IPP1	Transcriptional regulator	NA
UHGV-1961696_31	eggNOG-mapper	1231377.C426_2205	Transcriptional regulator, RinA family	NA
UHGV-1961696_31	NCBIFam	TIGR01636.1	phage transcriptional regulator, RinA family	NA
UHGV-1961696_31	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-1961696_32	PHROG	phrog_8684	NA	unknown function
UHGV-1961696_32	UniRef90	UniRef90_A0A4V0GIN2	Putative phage protein YopX	NA
UHGV-1961696_32	eggNOG-mapper	1234679.BN424_2637	YopX protein	NA
UHGV-1961696_32	Pfam	PF09643	YopX protein	YopX
UHGV-1961696_32	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-1961696_32	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1961696_33	UniRef90	UniRef90_C9A186	Predicted protein	NA
UHGV-1961696_34	PHROG	phrog_8350	NA	unknown function
UHGV-1961696_35	eggNOG-mapper	585394.RHOM_04375	NA	NA
UHGV-1961696_36	UniRef90	UniRef90_UPI001C48167C	MepB family protein	NA
UHGV-1961696_36	eggNOG-mapper	1449342.JQMR01000001_gene1221	MepB protein	NA
UHGV-1961696_36	Pfam	PF08877	MepB-like	MepB-like
UHGV-1961696_36	COG	COG4815	NA	NA
UHGV-1961696_37	PHROG	phrog_8839	NA	unknown function
UHGV-1961696_38	PHROG	phrog_3930	NA	unknown function
UHGV-1961696_39	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1961696_39	PHROG	phrog_1	integrase	integration and excision
UHGV-1961696_39	UniRef90	UniRef90_C9A184	Integrase/recombinase	NA
UHGV-1961696_39	eggNOG-mapper	565653.EGBG_01953	Phage integrase, N-terminal SAM-like domain	NA
UHGV-1961696_39	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-1961696_39	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1961696_39	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1961696_39	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-1961696_41	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1961696_41	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1961696_41	UniRef90	UniRef90_A0A242D102	Single-stranded DNA-binding protein	NA
UHGV-1961696_41	eggNOG-mapper	1139219.I569_00859	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1961696_41	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1961696_41	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1961696_41	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1961696_41	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1961696_41	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1961696_42	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1961696_42	UniRef90	UniRef90_A0A7T4KUL1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1961696_42	eggNOG-mapper	1567013.A0A0A7RTR1_9CAUD	magnesium ion binding	NA
UHGV-1961696_44	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1961696_44	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1961696_44	UniRef90	UniRef90_A0A7Z0S291	AAA family ATPase	NA
UHGV-1961696_44	eggNOG-mapper	1158604.I591_01788	DnaB-like helicase C terminal domain	NA
UHGV-1961696_44	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1961696_44	COG	COG0305	Replicative DNA helicase	NA
UHGV-1961696_44	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1961696_45	PHROG	phrog_1163	NA	unknown function
UHGV-1961696_45	UniRef90	UniRef90_UPI001F035ADF	phage replisome organizer N-terminal domain-containing protein	NA
UHGV-1961696_45	eggNOG-mapper	1158604.I591_00387	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-1961696_45	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-1961696_45	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-1961696_45	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-1961696_45	Structural annotation	PF09681, PF09524, TIGR01714, TIGR02220, COG3756	NA	NA
UHGV-1961696_46	PHROG	phrog_398	NA	unknown function
UHGV-1961696_46	UniRef90	UniRef90_UPI001A9BB190	putative HNHc nuclease	NA
UHGV-1961696_46	eggNOG-mapper	1201292.DR75_1532	Putative HNHc nuclease	NA
UHGV-1961696_46	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-1961696_46	Structural annotation	PF16784	NA	NA
UHGV-1961696_47	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1961696_47	UniRef90	UniRef90_UPI001CAA53F3	ERF family protein	NA
UHGV-1961696_47	eggNOG-mapper	1139219.I569_00064	ERF superfamily	NA
UHGV-1961696_47	Pfam	PF04404	ERF superfamily	ERF
UHGV-1961696_47	Structural annotation	PF04404, TIGR00607, COG5055	NA	NA
UHGV-1961696_49	PHROG	phrog_823	NA	unknown function
UHGV-1961696_49	UniRef90	UniRef90_A0A7Z0M183	NA	NA
UHGV-1961696_49	Pfam	PF05595	NA	DUF771
UHGV-1961696_49	COG	COG4707	Prophage pi2 protein 07	NA
UHGV-1961696_50	eggNOG-mapper	1158607.UAU_01001	NA	NA
UHGV-1961696_51	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1961696_51	UniRef90	UniRef90_A0A7Z0S288	Helix-turn-helix transcriptional regulator	NA
UHGV-1961696_51	eggNOG-mapper	1158612.I580_01940	Helix-turn-helix XRE-family like proteins	NA
UHGV-1961696_51	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1961696_51	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1961696_51	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-1961696_52	PHROG	phrog_87	metallo-protease	other
UHGV-1961696_52	UniRef90	UniRef90_A0A7Z0S2I3	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-1961696_52	eggNOG-mapper	226185.EF_2853	Zn peptidase	NA
UHGV-1961696_52	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1961696_52	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1961696_52	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1961696_53	PHROG	phrog_3727	NA	unknown function
UHGV-1961696_53	UniRef90	UniRef90_A0A377KNQ1	Lipoprotein	NA
UHGV-1961696_53	eggNOG-mapper	768486.EHR_09415	NA	NA
UHGV-1961696_54	KOfam	K14059	int; integrase	NA
UHGV-1961696_54	PHROG	phrog_1	integrase	integration and excision
UHGV-1961696_54	UniRef90	UniRef90_A0A7Z0S1Z8	Site-specific integrase	NA
UHGV-1961696_54	eggNOG-mapper	1296660.S5MBZ0_9CAUD	Pfam:Arm-DNA-bind_4	NA
UHGV-1961696_54	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-1961696_54	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1961696_54	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1961696_54	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA