UHGV-1962874

Genome information

Genome length 44,585 bps

CDS count 60

Completeness 99.18% (high-quality)

geNomad score 0.9727

Prediction confidence Confident

Genome information
Genome ID	UHGV-1962874
vOTU ID	vOTU-068378
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300014538\|Ga0134452_100002\|provirus_205912_250496
BioSample	NA
Country	Germany
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.18% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9727
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.06
Jumbo phage	No

Genome content
Genome length	44,585 bps
GC content	43.40%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	91.63%
Average CDS length	682.85 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1962874_1	eggNOG-mapper	1235790.C805_02660	NA	NA
UHGV-1962874_2	PHROG	phrog_6361	NA	unknown function
UHGV-1962874_2	UniRef90	UniRef90_UPI000C83B73C	SprT-like domain-containing protein	NA
UHGV-1962874_2	eggNOG-mapper	1235798.C817_02666	SprT-like family	NA
UHGV-1962874_2	Pfam	PF10263	SprT-like family	SprT-like
UHGV-1962874_2	Structural annotation	PF10263, MF_00745, NF003339, COG3091	NA	NA
UHGV-1962874_3	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1962874_3	PHROG	phrog_95	integrase	integration and excision
UHGV-1962874_3	UniRef90	UniRef90_R6N1X8	DNA integration/recombination protein	NA
UHGV-1962874_3	eggNOG-mapper	903814.ELI_1010	Resolvase, N terminal domain	NA
UHGV-1962874_3	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1962874_3	Pfam	PF07508	Recombinase	Recombinase
UHGV-1962874_3	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1962874_3	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1962874_3	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-1962874_4	UniRef90	UniRef90_A0A1C6L0N4	HTH cro/C1-type domain-containing protein	NA
UHGV-1962874_4	Structural annotation	PF08667, NF041951, COG3655	NA	NA
UHGV-1962874_6	KOfam	K08309	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	NA
UHGV-1962874_6	PHROG	phrog_19349	NA	unknown function
UHGV-1962874_6	UniRef90	UniRef90_R6N9M0	Soluble lytic murein transglycosylase and related regulatory proteins (Some contain LysM/invasin domains)	NA
UHGV-1962874_6	eggNOG-mapper	742740.HMPREF9474_02375	lytic transglycosylase activity	NA
UHGV-1962874_6	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-1962874_6	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-1962874_6	Structural annotation	PF01464, MF_01616, NF011856, COG0741	NA	NA
UHGV-1962874_8	UniRef90	UniRef90_R6NFS2	Archaeal holliday junction resolvase (Hjc)	NA
UHGV-1962874_8	eggNOG-mapper	1232453.BAIF02000010_gene3342	Recombination protein U	NA
UHGV-1962874_8	Structural annotation	PF03838, MF_01490, NF002581, COG1591	NA	NA
UHGV-1962874_9	KOfam	K18959	uvsW; ATP-dependent DNA helicase UvsW [EC:5.6.2.4]	NA
UHGV-1962874_9	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1962874_9	UniRef90	UniRef90_A0A849CVE0	DEAD/DEAH box helicase family protein	NA
UHGV-1962874_9	eggNOG-mapper	1449050.JNLE01000003_gene3908	Type III restriction protein res subunit	NA
UHGV-1962874_9	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-1962874_9	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1962874_9	NCBIFam	TIGR01445.1	intein N-terminal splicing region	NA
UHGV-1962874_9	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-1962874_9	Structural annotation	PF05203, PF16203, PF04851, MF_01489, TIGR00603, NF038162, COG1061, COG1372	NA	NA
UHGV-1962874_10	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1962874_10	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1962874_10	UniRef90	UniRef90_G9WTJ8	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1962874_10	eggNOG-mapper	1121871.AUAT01000002_gene1371	C-5 cytosine-specific DNA methylase	NA
UHGV-1962874_10	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-1962874_10	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1962874_10	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1962874_10	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1962874_10	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-1962874_11	PHROG	phrog_1252	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1962874_11	UniRef90	UniRef90_A0A849CVC4	DNA polymerase elongation subunit (Family B)	NA
UHGV-1962874_11	eggNOG-mapper	1121866.AUGK01000003_gene1403	DNA replication proofreading	NA
UHGV-1962874_11	Pfam	PF04404	ERF superfamily	ERF
UHGV-1962874_11	COG	COG0417	DNA polymerase B elongation subunit	NA
UHGV-1962874_11	Structural annotation	PF04404, PF08490, MF_04100, TIGR00592, COG0417	NA	NA
UHGV-1962874_12	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1962874_12	UniRef90	UniRef90_R6N9M4	Phage-related protein predicted endonuclease	NA
UHGV-1962874_12	eggNOG-mapper	1219626.HMPREF1639_07320	YqaJ viral recombinase family	NA
UHGV-1962874_12	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1962874_12	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1962874_12	Structural annotation	PF09588, TIGR03033, COG5377	NA	NA
UHGV-1962874_13	Structural annotation	PF05037	NA	NA
UHGV-1962874_14	PHROG	phrog_801	endolysin; inhibits RNA polymerase	lysis
UHGV-1962874_14	UniRef90	UniRef90_R6MZ55	NA	NA
UHGV-1962874_14	eggNOG-mapper	1297570.MESS4_510075	NA	NA
UHGV-1962874_14	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-1962874_14	Structural annotation	PF18909	NA	NA
UHGV-1962874_16	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-1962874_18	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-1962874_18	UniRef90	UniRef90_R6P545	Primase C terminal 1 (PriCT-1)./Bifunctional DNA primase/polymerase N-terminal	NA
UHGV-1962874_18	eggNOG-mapper	1121866.AUGK01000003_gene1409	Phage plasmid primase, P4 family domain protein	NA
UHGV-1962874_18	Pfam	PF08708	Primase C terminal 1 (PriCT-1)	PriCT_1
UHGV-1962874_18	COG	COG4983	Primase-polymerase (Primpol) domain protein	NA
UHGV-1962874_18	Structural annotation	PF08708, PF09250, COG4983	NA	NA
UHGV-1962874_19	PHROG	phrog_27214	NA	unknown function
UHGV-1962874_20	PHROG	phrog_1156	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-1962874_20	UniRef90	UniRef90_R6NFT7	Phage/plasmid primase P4 family C-terminal domain	NA
UHGV-1962874_20	eggNOG-mapper	649747.HMPREF0083_00553	Phage plasmid primase, P4 family	NA
UHGV-1962874_20	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-1962874_20	Pfam	PF19263	NA	DUF5906
UHGV-1962874_20	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-1962874_20	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-1962874_20	Structural annotation	PF08706, PF05272, PF02257, MF_04000, NF005477, COG3378	NA	NA
UHGV-1962874_21	PHROG	phrog_7880	NA	unknown function
UHGV-1962874_21	eggNOG-mapper	330084.JNYZ01000003_gene2313	NA	NA
UHGV-1962874_22	eggNOG-mapper	665950.HMPREF1025_01402	NA	NA
UHGV-1962874_23	eggNOG-mapper	397290.C810_01387	tRNA-splicing ligase RtcB	NA
UHGV-1962874_23	COG	COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	NA
UHGV-1962874_25	PHROG	phrog_1233	NA	unknown function
UHGV-1962874_25	eggNOG-mapper	33035.JPJF01000106_gene3130	NA	NA
UHGV-1962874_25	Structural annotation	PF13058	NA	NA
UHGV-1962874_27	UniRef90	UniRef90_UPI001C012D23	DNA-packaging protein	NA
UHGV-1962874_27	eggNOG-mapper	1415774.U728_1676	DNA-packaging protein gp3	NA
UHGV-1962874_27	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-1962874_28	PHROG	phrog_4264	NA	unknown function
UHGV-1962874_28	eggNOG-mapper	442493.A8E2H1_BPPHE	NA	NA
UHGV-1962874_29	PHROG	phrog_4534	NA	unknown function
UHGV-1962874_32	eggNOG-mapper	1354300.AUQY01000005_gene215	NA	NA
UHGV-1962874_33	UniRef90	UniRef90_UPI0008F814CA	helix-turn-helix domain-containing protein	NA
UHGV-1962874_34	UniRef90	UniRef90_A0A1C6L0N3	HTH cro/C1-type domain-containing protein	NA
UHGV-1962874_34	eggNOG-mapper	1235800.C819_01469	NA	NA
UHGV-1962874_34	Structural annotation	PF20075, TIGR03070, COG1396	NA	NA
UHGV-1962874_35	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1962874_35	PHROG	phrog_95	integrase	integration and excision
UHGV-1962874_35	UniRef90	UniRef90_A0A1C6L0M1	Transposon Tn3 resolvase	NA
UHGV-1962874_35	eggNOG-mapper	697329.Rumal_3466	resolvase	NA
UHGV-1962874_35	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1962874_35	Pfam	PF07508	Recombinase	Recombinase
UHGV-1962874_35	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1962874_35	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-1962874_37	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1962874_37	UniRef90	UniRef90_A0A810QA10	Terminase	NA
UHGV-1962874_37	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-1962874_37	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-1962874_37	COG	COG5410	NA	NA
UHGV-1962874_37	Structural annotation	PF17289, PF04466, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-1962874_38	PHROG	phrog_64	portal protein	head and packaging
UHGV-1962874_38	UniRef90	UniRef90_R6P563	SPP1 family phage portal protein	NA
UHGV-1962874_38	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1962874_38	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1962874_38	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1962874_39	Structural annotation	PF06810	NA	NA
UHGV-1962874_40	PHROG	phrog_544	major head protein	head and packaging
UHGV-1962874_40	eggNOG-mapper	428127.EUBDOL_01555	NA	NA
UHGV-1962874_40	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1962874_41	PHROG	phrog_390	Arc-like repressor	transcription regulation
UHGV-1962874_41	UniRef90	UniRef90_UPI001EEA4E79	termination factor Rho	NA
UHGV-1962874_41	eggNOG-mapper	1145276.T479_12240	NA	NA
UHGV-1962874_42	PHROG	phrog_132	head-tail adaptor	connector
UHGV-1962874_42	UniRef90	UniRef90_R6N215	Phage QLRG family putative DNA packaging	NA
UHGV-1962874_42	eggNOG-mapper	1215915.BN193_09090	Phage gp6-like head-tail connector protein	NA
UHGV-1962874_42	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1962874_42	Structural annotation	TIGR01560	NA	NA
UHGV-1962874_43	eggNOG-mapper	1121866.AUGK01000003_gene1432	NA	NA
UHGV-1962874_44	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-1962874_45	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-1962874_46	PHROG	phrog_158	major tail protein	tail
UHGV-1962874_46	UniRef90	UniRef90_A0A1C6L0H9	Phage tail protein	NA
UHGV-1962874_46	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-1962874_46	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-1962874_47	UniRef90	UniRef90_A0A1C0ADY7	NA	NA
UHGV-1962874_47	eggNOG-mapper	469596.HMPREF9488_01311	NA	NA
UHGV-1962874_47	Pfam	PF16478	NA	DUF5055
UHGV-1962874_47	Structural annotation	PF16478	NA	NA
UHGV-1962874_48	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-1962874_49	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1962874_49	eggNOG-mapper	428125.CLOLEP_01422	phage tail tape measure protein	NA
UHGV-1962874_49	COG	COG5412	Phage-related protein	NA
UHGV-1962874_50	PHROG	phrog_1194	NA	unknown function
UHGV-1962874_50	eggNOG-mapper	742740.HMPREF9474_03515	NA	NA
UHGV-1962874_50	Pfam	PF20458	NA	DUF6711
UHGV-1962874_50	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1962874_51	PHROG	phrog_13879	NA	unknown function
UHGV-1962874_51	eggNOG-mapper	1235800.C819_00474	NA	NA
UHGV-1962874_51	Structural annotation	PF03256, PF16466, PF13550, MF_00813, NF033848, COG3500	NA	NA
UHGV-1962874_52	PHROG	phrog_18725	NA	unknown function
UHGV-1962874_52	eggNOG-mapper	1235800.C819_00473	NA	NA
UHGV-1962874_53	PHROG	phrog_25620	tail collar fiber protein	tail
UHGV-1962874_53	eggNOG-mapper	411468.CLOSCI_00537	COG NOG18825 non supervised orthologous group	NA
UHGV-1962874_54	UniRef90	UniRef90_A0A1C6L0B1	NA	NA
UHGV-1962874_54	eggNOG-mapper	1321782.HMPREF1986_02279	COG NOG18825 non supervised orthologous group	NA
UHGV-1962874_55	eggNOG-mapper	742740.HMPREF9474_02256	NA	NA
UHGV-1962874_55	Structural annotation	PF10618	NA	NA
UHGV-1962874_56	PHROG	phrog_30034	NA	unknown function
UHGV-1962874_56	UniRef90	UniRef90_A0A8D9UHK2	Chitin oligosaccharide deacetylase	NA
UHGV-1962874_56	eggNOG-mapper	1154860.SAG0136_08155	NA	NA
UHGV-1962874_56	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-1962874_56	Structural annotation	PF14600	NA	NA
UHGV-1962874_57	PHROG	phrog_21825	endolysin	lysis
UHGV-1962874_57	UniRef90	UniRef90_A0A7C7ALL3	CHAP domain-containing protein	NA
UHGV-1962874_57	eggNOG-mapper	633697.EubceDRAFT1_2756	CHAP domain	NA
UHGV-1962874_57	Pfam	PF05257	CHAP domain	CHAP
UHGV-1962874_57	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-1962874_57	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-1962874_57	Structural annotation	PF00877, TIGR02594, COG3738	NA	NA
UHGV-1962874_58	PHROG	phrog_1863	NA	unknown function
UHGV-1962874_58	eggNOG-mapper	1232453.BAIF02000059_gene1610	NA	NA
UHGV-1962874_59	PHROG	phrog_443	holin	lysis
UHGV-1962874_59	UniRef90	UniRef90_UPI001BB47E53	holin	NA
UHGV-1962874_59	eggNOG-mapper	1235800.C819_01425	Putative lactococcus lactis phage r1t holin	NA
UHGV-1962874_59	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-1962874_59	Structural annotation	PF16945	NA	NA
UHGV-1962874_60	KOfam	K03664	smpB; SsrA-binding protein	NA
UHGV-1962874_60	PHROG	phrog_6791	NA	unknown function
UHGV-1962874_60	UniRef90	UniRef90_A0A7C7AQ09	SsrA-binding protein	NA
UHGV-1962874_60	eggNOG-mapper	428125.CLOLEP_02245	the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA	NA
UHGV-1962874_60	Pfam	PF01668	SmpB protein	SmpB
UHGV-1962874_60	NCBIFam	NF003843.0	SsrA-binding protein SmpB	NA
UHGV-1962874_60	COG	COG0691	tmRNA-binding protein	NA
UHGV-1962874_60	HAMAP	MF_00023	SsrA-binding protein [smpB]	NA
UHGV-1962874_60	Structural annotation	PF01668, MF_00023, NF003843, COG0691	NA	NA