UHGV-1962971

Genome information

Genome length 43,255 bps

CDS count 59

Completeness 99.90% (high-quality)

geNomad score 0.9576

Prediction confidence Confident

Genome information
Genome ID	UHGV-1962971
vOTU ID	vOTU-011536
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300008129\|Ga0114848_100083\|provirus_60845_104099
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	28
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9576
Virus hallmark genes (geNomad)	18
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	72.71
Jumbo phage	No

Genome content
Genome length	43,255 bps
GC content	46.43%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	88.05%
Average CDS length	650.03 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1962971_1	UniRef90	UniRef90_A0A6I3S820	Type II-B CRISPR-associated RNA-guided endonuclease Cas9/Csx12	NA
UHGV-1962971_1	eggNOG-mapper	762966.HMPREF9439_02317	HNH endonuclease	NA
UHGV-1962971_1	PADLOC	cas_csx12	CRISPR system subtype II-B RNA-guided endonuclease Cas9/Csx12	CRISPR-CAS
UHGV-1962971_1	Pfam	PF21069	CRISPR-associated endonuclease Cas9 alpha-helical lobe	Csx12
UHGV-1962971_1	Pfam	PF13395	HNH endonuclease	HNH_4
UHGV-1962971_1	NCBIFam	TIGR03031.1	type II-B CRISPR-associated RNA-guided endonuclease Cas9/Csx12	NA
UHGV-1962971_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1962971_2	UniRef90	UniRef90_A0A1N7K090	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-1962971_2	eggNOG-mapper	469610.HMPREF0189_02290	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-1962971_2	Pfam	PF13597	Anaerobic ribonucleoside-triphosphate reductase	NRDD
UHGV-1962971_2	COG	COG1328	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-1962971_4	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-1962971_4	PHROG	phrog_7	endolysin	lysis
UHGV-1962971_4	UniRef90	UniRef90_UPI0012BD304A	lysozyme	NA
UHGV-1962971_4	eggNOG-mapper	742821.HMPREF9464_01808	Phage lysozyme	NA
UHGV-1962971_4	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-1962971_4	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-1962971_4	HAMAP	MF_04110	Endolysin	NA
UHGV-1962971_4	Structural annotation	PF00959, MF_04110, COG3772	NA	NA
UHGV-1962971_5	PHROG	phrog_199	holin	lysis
UHGV-1962971_5	UniRef90	UniRef90_F3QJG2	Toxin secretion/phage lysis holin	NA
UHGV-1962971_5	eggNOG-mapper	762966.HMPREF9439_01063	Bacteriophage holin family	NA
UHGV-1962971_5	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1962971_5	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1962971_5	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1962971_5	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1962971_6	PHROG	phrog_4912	tail fiber assembly	tail
UHGV-1962971_6	UniRef90	UniRef90_UPI0019D5E4CB	phage tail assembly chaperone	NA
UHGV-1962971_6	eggNOG-mapper	742823.HMPREF9465_01858	Phage tail assembly chaperone protein	NA
UHGV-1962971_6	Pfam	PF16778	Phage tail assembly chaperone protein	Phage_tail_APC
UHGV-1962971_6	Structural annotation	PF16778	NA	NA
UHGV-1962971_7	PHROG	phrog_1	integrase	integration and excision
UHGV-1962971_7	UniRef90	UniRef90_UPI00188D22D2	tyrosine-type recombinase/integrase	NA
UHGV-1962971_7	eggNOG-mapper	742821.HMPREF9464_01814	Belongs to the 'phage' integrase family	NA
UHGV-1962971_7	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1962971_8	PHROG	phrog_523	tail collar fiber protein	tail
UHGV-1962971_8	UniRef90	UniRef90_UPI00135EC46B	phage tail protein	NA
UHGV-1962971_8	eggNOG-mapper	556268.OFAG_01050	tail collar domain protein	NA
UHGV-1962971_8	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-1962971_8	COG	COG4675	Phage tail collar domain	NA
UHGV-1962971_8	Structural annotation	PF07484, COG4675	NA	NA
UHGV-1962971_9	PHROG	phrog_203	tail protein	tail
UHGV-1962971_9	UniRef90	UniRef90_A0A7U6JL12	Putative membrane protein	NA
UHGV-1962971_9	eggNOG-mapper	742821.HMPREF9464_01816	NA	NA
UHGV-1962971_9	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-1962971_9	COG	COG3778	NA	NA
UHGV-1962971_9	Structural annotation	PF10076, COG3778	NA	NA
UHGV-1962971_10	PHROG	phrog_6	baseplate protein	tail
UHGV-1962971_10	UniRef90	UniRef90_A0A5B7ZKF1	Baseplate J/gp47 family protein	NA
UHGV-1962971_10	eggNOG-mapper	742821.HMPREF9464_01817	Baseplate J family protein	NA
UHGV-1962971_10	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-1962971_10	COG	COG3299	NA	NA
UHGV-1962971_10	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-1962971_11	PHROG	phrog_180	tail protein	tail
UHGV-1962971_11	UniRef90	UniRef90_UPI000AD22408	phage GP46 family protein	NA
UHGV-1962971_11	eggNOG-mapper	742821.HMPREF9464_01818	Phage protein GP46	NA
UHGV-1962971_11	Pfam	PF07409	NA	GP46
UHGV-1962971_11	COG	COG4381	NA	NA
UHGV-1962971_11	Structural annotation	PF07409, COG4381	NA	NA
UHGV-1962971_12	UniRef90	UniRef90_E7H532	Prophage MuSo2	NA
UHGV-1962971_12	eggNOG-mapper	742821.HMPREF9464_01820	Bacteriophage Mu Gp45 protein	NA
UHGV-1962971_12	Pfam	PF06890	Bacteriophage Mu Gp45 spike protein	Phage_Mu_Gp45
UHGV-1962971_12	NCBIFam	TIGR01644.1	phage baseplate assembly protein V	NA
UHGV-1962971_12	COG	COG4384	NA	NA
UHGV-1962971_12	Structural annotation	PF06890, MF_00216, TIGR01644, COG4384	NA	NA
UHGV-1962971_13	PHROG	phrog_177	tail protein	tail
UHGV-1962971_13	UniRef90	UniRef90_A0A2D0IGP6	Baseplate protein	NA
UHGV-1962971_13	eggNOG-mapper	742821.HMPREF9464_01822	Tail protein	NA
UHGV-1962971_13	Pfam	PF21683	Mu phage baseplate assembly protein GpP-like, N-terminal	GpP-like_1st
UHGV-1962971_13	COG	COG4379	Mu-like prophage tail protein gpP	NA
UHGV-1962971_13	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-1962971_14	PHROG	phrog_184	DNA circularization	DNA, RNA and nucleotide metabolism
UHGV-1962971_14	UniRef90	UniRef90_E7H535	DNA_circ_N domain-containing protein	NA
UHGV-1962971_14	eggNOG-mapper	742821.HMPREF9464_01823	DNA circularisation protein N-terminus	NA
UHGV-1962971_14	Pfam	PF07157	DNA circularisation protein N-terminus	DNA_circ_N
UHGV-1962971_14	COG	COG4228	Mu-like prophage DNA circulation protein	NA
UHGV-1962971_14	Structural annotation	PF07157, TIGR01633, COG4228	NA	NA
UHGV-1962971_15	PHROG	phrog_8125	tail length tape measure protein	tail
UHGV-1962971_15	UniRef90	UniRef90_A0A6L6YME8	Phage tail tape measure protein	NA
UHGV-1962971_15	eggNOG-mapper	742821.HMPREF9464_01824	Phage-related minor tail protein	NA
UHGV-1962971_15	COG	COG5283	Phage-related tail protein	NA
UHGV-1962971_15	Structural annotation	TIGR01760	NA	NA
UHGV-1962971_16	UniRef90	UniRef90_UPI001CE41D55	phage tail assembly protein	NA
UHGV-1962971_16	eggNOG-mapper	279714.FuraDRAFT_0286	Phage tail assembly chaperone proteins, E, or 41 or 14	NA
UHGV-1962971_16	Pfam	PF10109	Phage tail assembly chaperone proteins, E, or 41 or 14	Phage_TAC_7
UHGV-1962971_16	Structural annotation	PF10109, COG4518	NA	NA
UHGV-1962971_17	PHROG	phrog_185	tail tube protein	tail
UHGV-1962971_17	UniRef90	UniRef90_A0A7U6GU04	Putative membrane protein	NA
UHGV-1962971_17	eggNOG-mapper	1124983.PFLCHA0_c12510	Phage tail tube protein	NA
UHGV-1962971_17	Pfam	PF10618	Phage tail tube protein	Tail_tube
UHGV-1962971_17	Structural annotation	PF10618, TIGR02241, COG3498	NA	NA
UHGV-1962971_18	PHROG	phrog_165	tail sheath	tail
UHGV-1962971_18	UniRef90	UniRef90_A0A5B7ZKE4	Phage tail protein	NA
UHGV-1962971_18	eggNOG-mapper	742821.HMPREF9464_01827	tail sheath	NA
UHGV-1962971_18	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-1962971_18	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-1962971_18	COG	COG4386	Mu-like prophage tail sheath protein gpL	NA
UHGV-1962971_18	Structural annotation	PF10758, COG4386	NA	NA
UHGV-1962971_19	PHROG	phrog_209	portal protein	head and packaging
UHGV-1962971_19	UniRef90	UniRef90_K7ZYZ8	FIG111678: IS, phage, Tn Transposon-related functions	NA
UHGV-1962971_19	eggNOG-mapper	1082705.JIBP01000010_gene163	NA	NA
UHGV-1962971_19	Structural annotation	PF09646	NA	NA
UHGV-1962971_20	PHROG	phrog_879	tail completion or Neck1 protein	connector
UHGV-1962971_20	UniRef90	UniRef90_A0A7U6JN97	Putative membrane protein	NA
UHGV-1962971_20	eggNOG-mapper	1073999.BN137_1173	NA	NA
UHGV-1962971_20	Structural annotation	TIGR01725	NA	NA
UHGV-1962971_21	PHROG	phrog_25	head closure Hc1	connector
UHGV-1962971_21	UniRef90	UniRef90_UPI0007E2F3D8	phage head closure protein	NA
UHGV-1962971_21	eggNOG-mapper	742821.HMPREF9464_01829	Phage head-tail joining protein	NA
UHGV-1962971_21	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1962971_21	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1962971_21	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1962971_22	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-1962971_22	UniRef90	UniRef90_A0A6L6YIV6	Phage gp6-like head-tail connector protein	NA
UHGV-1962971_22	eggNOG-mapper	575589.HMPREF0018_02853	Phage gp6-like head-tail connector protein	NA
UHGV-1962971_22	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1962971_22	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1962971_22	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1962971_24	PHROG	phrog_10	major head protein	head and packaging
UHGV-1962971_24	UniRef90	UniRef90_A0A5B7ZMF6	Phage major capsid protein	NA
UHGV-1962971_24	eggNOG-mapper	742821.HMPREF9464_01831	Phage capsid family	NA
UHGV-1962971_24	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1962971_24	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1962971_24	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1962971_24	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1962971_25	KOfam	K06904	NA	NA
UHGV-1962971_25	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1962971_25	UniRef90	UniRef90_A0A6L6YJ61	HK97 family phage prohead protease	NA
UHGV-1962971_25	eggNOG-mapper	742821.HMPREF9464_01832	Caudovirus prohead serine protease	NA
UHGV-1962971_25	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1962971_25	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1962971_25	COG	COG3740	Phage head maturation protease	NA
UHGV-1962971_25	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1962971_26	PHROG	phrog_12	portal protein	head and packaging
UHGV-1962971_26	UniRef90	UniRef90_A0A5B7ZK00	Phage portal protein	NA
UHGV-1962971_26	eggNOG-mapper	742821.HMPREF9464_01833	Phage portal protein	NA
UHGV-1962971_26	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1962971_26	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1962971_26	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1962971_26	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1962971_27	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1962971_27	UniRef90	UniRef90_UPI0006710F9A	terminase large subunit	NA
UHGV-1962971_27	eggNOG-mapper	742821.HMPREF9464_01834	Terminase	NA
UHGV-1962971_27	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1962971_27	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1962971_27	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1962971_27	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1962971_28	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-1962971_28	UniRef90	UniRef90_A0A6L6YGN1	Phage terminase small subunit P27 family	NA
UHGV-1962971_28	eggNOG-mapper	380358.XALC_2399	Phage terminase, small subunit	NA
UHGV-1962971_28	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1962971_28	COG	COG3747	Phage terminase, small subunit	NA
UHGV-1962971_28	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1962971_30	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1962971_30	eggNOG-mapper	713587.THITH_01560	NA	NA
UHGV-1962971_30	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-1962971_32	eggNOG-mapper	762966.HMPREF9439_01020	NA	NA
UHGV-1962971_34	PHROG	phrog_5810	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1962971_34	eggNOG-mapper	596153.Alide_1668	NA	NA
UHGV-1962971_34	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-1962971_34	Structural annotation	PF13730, MF_01819, TIGR01610, COG5529	NA	NA
UHGV-1962971_35	PHROG	phrog_35	transcriptional repressor	transcription regulation
UHGV-1962971_35	UniRef90	UniRef90_UPI00050A263E	YdaS family helix-turn-helix protein	NA
UHGV-1962971_35	eggNOG-mapper	1156919.QWC_10636	Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA
UHGV-1962971_35	Pfam	PF15943	Bacterial toxin YdaS	YdaS_toxin
UHGV-1962971_35	COG	COG4197	DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily	NA
UHGV-1962971_36	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1962971_36	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1962971_36	UniRef90	UniRef90_D9Y6L5	Peptidase S24-like protein	NA
UHGV-1962971_36	eggNOG-mapper	469610.HMPREF0189_01170	Peptidase S24-like	NA
UHGV-1962971_36	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1962971_36	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-1962971_36	Structural annotation	PF00717, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-1962971_37	COG	COG1933	Archaeal DNA polymerase II, large subunit	NA
UHGV-1962971_38	UniRef90	UniRef90_R5EI30	Putative transcriptional regulator	NA
UHGV-1962971_41	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1962971_41	UniRef90	UniRef90_D9Y6C9	YqaJ viral recombinase family protein	NA
UHGV-1962971_41	eggNOG-mapper	469610.HMPREF0189_01158	YqaJ-like viral recombinase domain	NA
UHGV-1962971_41	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1962971_41	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-1962971_41	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1962971_41	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-1962971_43	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1962971_43	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1962971_43	UniRef90	UniRef90_D9Y6K1	Recombinase, phage RecT family	NA
UHGV-1962971_43	eggNOG-mapper	469610.HMPREF0189_01156	RecT family	NA
UHGV-1962971_43	Pfam	PF03837	RecT family	RecT
UHGV-1962971_43	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1962971_43	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1962971_46	Structural annotation	MF_04067	NA	NA
UHGV-1962971_47	KOfam	K02338	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	NA
UHGV-1962971_47	PHROG	phrog_3007	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1962971_47	eggNOG-mapper	153948.NAL212_0166	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria	NA
UHGV-1962971_47	COG	COG0592	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	NA
UHGV-1962971_47	Structural annotation	PF02767, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-1962971_49	KOfam	K17080	PHB1; prohibitin 1	NA
UHGV-1962971_49	PHROG	phrog_200	lipoprotein	other
UHGV-1962971_49	UniRef90	UniRef90_A0A6L6YN91	SPFH/Band 7/PHB domain protein	NA
UHGV-1962971_49	eggNOG-mapper	1484158.PSNIH1_18910	SPFH domain / Band 7 family	NA
UHGV-1962971_49	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-1962971_49	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-1962971_49	Structural annotation	PF01145, MF_01562, TIGR01932, COG0330	NA	NA
UHGV-1962971_52	eggNOG-mapper	469610.HMPREF0189_01154	NA	NA
UHGV-1962971_56	PHROG	phrog_1485	NA	unknown function
UHGV-1962971_56	UniRef90	UniRef90_A0A143Z184	Clostridium phage phictp1 gp74	NA
UHGV-1962971_56	eggNOG-mapper	871584.D9ZNJ8_9CAUD	NA	NA
UHGV-1962971_56	Pfam	PF07659	Nucleotide modification associated domain 1	DUF1599
UHGV-1962971_59	KOfam	K14059	int; integrase	NA
UHGV-1962971_59	PHROG	phrog_1	integrase	integration and excision
UHGV-1962971_59	UniRef90	UniRef90_A0A3D4G8C1	Core-binding (CB) domain-containing protein	NA
UHGV-1962971_59	eggNOG-mapper	762966.HMPREF9439_01612	Belongs to the 'phage' integrase family	NA
UHGV-1962971_59	Pfam	PF13356	Arm DNA-binding domain	Arm-DNA-bind_3
UHGV-1962971_59	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1962971_59	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1962971_59	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA