UHGV-1962980

Genome information

Genome length 26,433 bps

CDS count 38

Completeness 62.64% (medium-quality)

geNomad score 0.9826

Prediction confidence Confident

Genome information
Genome ID	UHGV-1962980
vOTU ID	vOTU-040212
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300008523\|Ga0115231_1000830
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.64% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9826
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.35
Jumbo phage	No

Genome content
Genome length	26,433 bps
GC content	55.34%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	38
CDS density	89.38%
Average CDS length	625.03 bps
tRNA count	5
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1962980_2	Structural annotation	PF12510	NA	NA
UHGV-1962980_3	PHROG	phrog_20016	NA	unknown function
UHGV-1962980_3	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-1962980_3	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-1962980_3	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1962980_4	PHROG	phrog_16490	NA	unknown function
UHGV-1962980_4	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-1962980_5	PHROG	phrog_22984	NA	unknown function
UHGV-1962980_6	PHROG	phrog_21718	NA	unknown function
UHGV-1962980_6	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-1962980_7	PHROG	phrog_3754	NA	unknown function
UHGV-1962980_7	eggNOG-mapper	1235790.C805_00054	NA	NA
UHGV-1962980_9	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-1962980_9	Structural annotation	PF13560, NF040522	NA	NA
UHGV-1962980_12	UniRef90	UniRef90_UPI0018835F0C	collagen-like protein	NA
UHGV-1962980_12	eggNOG-mapper	411483.FAEPRAA2165_00757	NA	NA
UHGV-1962980_12	Structural annotation	PF10651	NA	NA
UHGV-1962980_13	PHROG	phrog_15303	NA	unknown function
UHGV-1962980_13	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-1962980_15	KOfam	K07273	acm; lysozyme	NA
UHGV-1962980_15	PHROG	phrog_291	endolysin	lysis
UHGV-1962980_15	UniRef90	UniRef90_E2ZES5	Glycosyl hydrolase family 25	NA
UHGV-1962980_15	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-1962980_15	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1962980_15	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1962980_15	Structural annotation	PF01183, COG3757	NA	NA
UHGV-1962980_16	PHROG	phrog_1382	NA	unknown function
UHGV-1962980_16	eggNOG-mapper	411468.CLOSCI_00272	NA	NA
UHGV-1962980_18	eggNOG-mapper	748224.HMPREF9436_01407	COG NOG18825 non supervised orthologous group	NA
UHGV-1962980_19	PHROG	phrog_3558	tail protein	tail
UHGV-1962980_19	UniRef90	UniRef90_F9P917	Phage minor structural protein, N-terminal domain protein	NA
UHGV-1962980_19	eggNOG-mapper	1035184.HMPREF1042_1326	Prophage endopeptidase tail	NA
UHGV-1962980_19	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1962980_19	COG	COG4926	Phage-related protein	NA
UHGV-1962980_19	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-1962980_20	UniRef90	UniRef90_A0A417QGC1	MtfA protein	NA
UHGV-1962980_20	eggNOG-mapper	411490.ANACAC_00709	phage tail	NA
UHGV-1962980_20	COG	COG4722	Phage-related protein YomH	NA
UHGV-1962980_20	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-1962980_21	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-1962980_21	UniRef90	UniRef90_A0A6N7TLD3	Tape measure protein	NA
UHGV-1962980_21	eggNOG-mapper	411470.RUMGNA_02228	tape measure	NA
UHGV-1962980_21	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1962980_21	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1962980_21	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1962980_21	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-1962980_24	PHROG	phrog_885	major tail protein	tail
UHGV-1962980_24	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-1962980_24	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-1962980_25	Structural annotation	PF13554	NA	NA
UHGV-1962980_26	PHROG	phrog_17977	NA	unknown function
UHGV-1962980_26	UniRef90	UniRef90_A0A844DHJ8	Phage head closure protein	NA
UHGV-1962980_26	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1962980_28	PHROG	phrog_544	major head protein	head and packaging
UHGV-1962980_28	UniRef90	UniRef90_R0BKA1	S-l_SbsC_C domain-containing protein	NA
UHGV-1962980_28	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-1962980_28	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-1962980_30	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1962980_30	UniRef90	UniRef90_A0A6N7TNP6	HK97 gp10 family phage protein	NA
UHGV-1962980_30	eggNOG-mapper	1123309.AQYB01000018_gene814	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1962980_30	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1962980_30	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1962980_33	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-1962980_33	UniRef90	UniRef90_A0A6N7TLR7	Phage_Mu_F domain-containing protein	NA
UHGV-1962980_33	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-1962980_33	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1962980_33	COG	COG2369	NA	NA
UHGV-1962980_33	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1962980_35	PHROG	phrog_64	portal protein	head and packaging
UHGV-1962980_35	UniRef90	UniRef90_A0A6N7TNT3	Phage portal protein	NA
UHGV-1962980_35	eggNOG-mapper	642492.Clole_2764	phage portal protein, SPP1	NA
UHGV-1962980_35	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1962980_35	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1962980_36	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1962980_36	PHROG	phrog_10250	NA	unknown function
UHGV-1962980_36	UniRef90	UniRef90_A0A844D8I4	PBSX family phage terminase large subunit	NA
UHGV-1962980_36	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-1962980_36	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1962980_36	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-1962980_36	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1962980_36	COG	COG1783	Phage terminase large subunit	NA
UHGV-1962980_36	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1962980_37	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-1962980_37	eggNOG-mapper	748224.HMPREF9436_03342	transposase activity	NA
UHGV-1962980_37	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-1962980_38	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-1962980_38	PHROG	phrog_498	DNA methyltransferase	other
UHGV-1962980_38	UniRef90	UniRef90_UPI0012DE0D94	site-specific DNA-methyltransferase	NA
UHGV-1962980_38	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-1962980_38	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1962980_38	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1962980_38	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1962980_38	COG	COG0863	DNA modification methylase	NA
UHGV-1962980_38	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA