UHGV-1963481

Genome information

Genome length 29,789 bps

CDS count 36

Completeness 80.31% (medium-quality)

geNomad score 0.9654

Prediction confidence Confident

Genome information
Genome ID	UHGV-1963481
vOTU ID	vOTU-022943
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300014919\|Ga0169798_100141\|provirus_3_29791
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.31% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9654
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.26
Jumbo phage	No

Genome content
Genome length	29,789 bps
GC content	33.95%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	36
CDS density	90.20%
Average CDS length	748.08 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1963481_1	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1963481_1	PHROG	phrog_1	integrase	integration and excision
UHGV-1963481_1	UniRef90	UniRef90_C3QN57	Core-binding (CB) domain-containing protein	NA
UHGV-1963481_1	eggNOG-mapper	411476.BACOVA_04238	Belongs to the 'phage' integrase family	NA
UHGV-1963481_1	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-1963481_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1963481_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1963481_1	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-1963481_2	UniRef90	UniRef90_A0A174BNX7	NA	NA
UHGV-1963481_2	eggNOG-mapper	411476.BACOVA_04239	NA	NA
UHGV-1963481_2	Pfam	PF14053	NA	DUF4248
UHGV-1963481_4	UniRef90	UniRef90_A0A081UHK5	C2H2-type domain-containing protein	NA
UHGV-1963481_4	eggNOG-mapper	411476.BACOVA_04242	NA	NA
UHGV-1963481_5	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1963481_5	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1963481_5	UniRef90	UniRef90_A0A139LM66	Replicative DNA helicase	NA
UHGV-1963481_5	eggNOG-mapper	411476.BACOVA_04243	Participates in initiation and elongation during chromosome replication	NA
UHGV-1963481_5	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-1963481_5	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1963481_5	NCBIFam	TIGR00665.1	replicative DNA helicase	NA
UHGV-1963481_5	COG	COG0305	Replicative DNA helicase	NA
UHGV-1963481_5	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1963481_6	UniRef90	UniRef90_D6D503	DNA-binding protein, histone-like, putative	NA
UHGV-1963481_6	eggNOG-mapper	657309.BXY_45260	DNA-binding protein	NA
UHGV-1963481_6	Pfam	PF18291	HU domain fused to wHTH, Ig, or Glycine-rich motif	HU-HIG
UHGV-1963481_6	NCBIFam	TIGR01201.1	HU family DNA-binding protein	NA
UHGV-1963481_6	COG	COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	NA
UHGV-1963481_6	Structural annotation	PF18291, MF_00380, TIGR01201, COG0776	NA	NA
UHGV-1963481_7	eggNOG-mapper	657309.BXY_45270	NA	NA
UHGV-1963481_9	eggNOG-mapper	762903.Pedsa_0939	Phage minor structural protein	NA
UHGV-1963481_9	COG	COG4926	Phage-related protein	NA
UHGV-1963481_10	PHROG	phrog_30639	NA	unknown function
UHGV-1963481_10	eggNOG-mapper	1236514.BAKL01000051_gene3689	NA	NA
UHGV-1963481_10	Structural annotation	PF14594, TIGR03361, COG4379	NA	NA
UHGV-1963481_11	UniRef90	UniRef90_A0A0P0F026	Myosin tail	NA
UHGV-1963481_11	eggNOG-mapper	1122931.AUAE01000036_gene1067	domain protein	NA
UHGV-1963481_11	COG	COG5283	Phage-related tail protein	NA
UHGV-1963481_12	PHROG	phrog_16333	NA	unknown function
UHGV-1963481_13	eggNOG-mapper	1347393.HG726020_gene889	NA	NA
UHGV-1963481_13	Structural annotation	PF11836	NA	NA
UHGV-1963481_14	PHROG	phrog_1407	major tail protein	tail
UHGV-1963481_14	UniRef90	UniRef90_UPI00101D4FB2	phage tail tube protein	NA
UHGV-1963481_14	eggNOG-mapper	908937.Prede_1348	Phage tail tube protein	NA
UHGV-1963481_14	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-1963481_14	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1963481_15	UniRef90	UniRef90_UPI00101D5124	NA	NA
UHGV-1963481_15	eggNOG-mapper	1347393.HG726020_gene891	NA	NA
UHGV-1963481_15	Pfam	PF11367	NA	DUF3168
UHGV-1963481_15	Structural annotation	PF11367, COG5003	NA	NA
UHGV-1963481_16	eggNOG-mapper	1347393.HG726020_gene892	NA	NA
UHGV-1963481_16	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-1963481_17	PHROG	phrog_25	head closure Hc1	connector
UHGV-1963481_17	UniRef90	UniRef90_UPI00101C0B54	phage head closure protein	NA
UHGV-1963481_17	eggNOG-mapper	908937.Prede_1351	Phage head-tail joining protein	NA
UHGV-1963481_17	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1963481_17	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1963481_17	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1963481_18	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-1963481_18	UniRef90	UniRef90_UPI00101CDB75	head-tail connector protein	NA
UHGV-1963481_18	eggNOG-mapper	1347393.HG726026_gene2615	Phage gp6-like head-tail connector protein	NA
UHGV-1963481_18	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1963481_18	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1963481_18	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1963481_19	PHROG	phrog_617	major head protein	head and packaging
UHGV-1963481_19	UniRef90	UniRef90_UPI00189F81E4	phage major capsid protein	NA
UHGV-1963481_19	eggNOG-mapper	1122931.AUAE01000036_gene1069	Phage capsid family	NA
UHGV-1963481_19	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1963481_19	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1963481_19	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1963481_19	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1963481_20	KOfam	K06904	NA	NA
UHGV-1963481_20	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1963481_20	UniRef90	UniRef90_UPI00189E0860	HK97 family phage prohead protease	NA
UHGV-1963481_20	eggNOG-mapper	1236517.BAKO01000013_gene1443	Caudovirus prohead serine protease	NA
UHGV-1963481_20	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1963481_20	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1963481_20	COG	COG3740	Phage head maturation protease	NA
UHGV-1963481_20	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1963481_22	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-1963481_22	Structural annotation	PF03382	NA	NA
UHGV-1963481_23	PHROG	phrog_5004	NA	unknown function
UHGV-1963481_23	COG	COG5295	Autotransporter adhesin	NA
UHGV-1963481_24	PHROG	phrog_12	portal protein	head and packaging
UHGV-1963481_24	UniRef90	UniRef90_UPI00101B9DC9	phage portal protein	NA
UHGV-1963481_24	eggNOG-mapper	908937.Prede_1355	Phage portal protein	NA
UHGV-1963481_24	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1963481_24	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1963481_24	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1963481_24	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1963481_25	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1963481_25	UniRef90	UniRef90_UPI00101B7D85	terminase large subunit	NA
UHGV-1963481_25	eggNOG-mapper	1268240.ATFI01000007_gene421	Phage Terminase	NA
UHGV-1963481_25	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1963481_25	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1963481_25	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1963481_25	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1963481_26	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-1963481_26	UniRef90	UniRef90_UPI00189CA94C	P27 family phage terminase small subunit	NA
UHGV-1963481_26	eggNOG-mapper	1122931.AUAE01000036_gene1073	Phage terminase, small subunit	NA
UHGV-1963481_26	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1963481_26	COG	COG3747	Phage terminase, small subunit	NA
UHGV-1963481_26	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1963481_28	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1963481_28	UniRef90	UniRef90_UPI00189CB022	HNH endonuclease	NA
UHGV-1963481_28	eggNOG-mapper	1458851.X2KRI9_9CAUD	HNH endonuclease	NA
UHGV-1963481_28	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-1963481_28	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-1963481_28	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1963481_32	Structural annotation	PF12187, NF002581	NA	NA
UHGV-1963481_33	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1963481_33	UniRef90	UniRef90_UPI00101C7BD6	HNH endonuclease	NA
UHGV-1963481_33	eggNOG-mapper	1268240.ATFI01000007_gene425	HNH endonuclease	NA
UHGV-1963481_33	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1963481_33	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1963481_34	UniRef90	UniRef90_UPI00189F36EE	lipocalin family protein	NA
UHGV-1963481_34	Structural annotation	PF16585, TIGR03066, COG3187	NA	NA
UHGV-1963481_36	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1963481_36	PHROG	phrog_95	integrase	integration and excision
UHGV-1963481_36	UniRef90	UniRef90_A0A1C5MQY5	Resolvase, N terminal domain	NA
UHGV-1963481_36	eggNOG-mapper	1122978.AUFP01000005_gene1383	Recombinase	NA
UHGV-1963481_36	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1963481_36	Pfam	PF07508	Recombinase	Recombinase
UHGV-1963481_36	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA