UHGV-1963497

Genome information

vOTU vOTU-062070

Genome length 35,153 bps

CDS count 54

Completeness 95.73% (high-quality)

geNomad score 0.9792

Prediction confidence Confident

Genome information
Genome ID	UHGV-1963497
vOTU ID	vOTU-062070
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300022758\|Ga0255597_114511
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.73% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	28
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9792
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	73.08
Jumbo phage	No

Genome content
Genome length	35,153 bps
GC content	36.63%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	90.77%
Average CDS length	593.22 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1963497_1	eggNOG-mapper	139871.A9D9R6_9VIRU	endonuclease activity	NA
UHGV-1963497_2	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1963497_2	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1963497_2	UniRef90	UniRef90_C7XUU0	Phage terminase, large subunit, PBSX family	NA
UHGV-1963497_2	eggNOG-mapper	139871.A9D9R9_9VIRU	Terminase-like family	NA
UHGV-1963497_2	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1963497_2	Structural annotation	PF04466, MF_04148, NF007827, COG1783	NA	NA
UHGV-1963497_3	UniRef90	UniRef90_I7LA68	Small terminase subunit	NA
UHGV-1963497_3	eggNOG-mapper	1416334.X2CXN2_9CAUD	endonuclease activity	NA
UHGV-1963497_4	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-1963497_4	UniRef90	UniRef90_A0A4R4A8U1	Homeodomain-like domain-containing protein	NA
UHGV-1963497_4	eggNOG-mapper	139871.A9D9R6_9VIRU	endonuclease activity	NA
UHGV-1963497_5	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-1963497_5	UniRef90	UniRef90_A0A137PLW2	ArpU family transcriptional regulator	NA
UHGV-1963497_5	eggNOG-mapper	1399941.U3PIU0_9CAUD	NA	NA
UHGV-1963497_5	NCBIFam	TIGR01637.1	ArpU family phage packaging/lysis transcriptional regulator	NA
UHGV-1963497_7	PHROG	phrog_17520	NA	unknown function
UHGV-1963497_9	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1963497_9	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1963497_9	UniRef90	UniRef90_Q20DF1	Putative holiday junction resolvase	NA
UHGV-1963497_9	eggNOG-mapper	324831.LGAS_0591	Endodeoxyribonuclease RusA	NA
UHGV-1963497_9	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1963497_9	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1963497_9	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1963497_10	PHROG	phrog_834	NA	unknown function
UHGV-1963497_10	eggNOG-mapper	1416334.X2CY62_9CAUD	NA	NA
UHGV-1963497_13	PHROG	phrog_22112	NA	unknown function
UHGV-1963497_13	eggNOG-mapper	139871.A9D9N5_9VIRU	NA	NA
UHGV-1963497_14	PHROG	phrog_22711	NA	unknown function
UHGV-1963497_15	PHROG	phrog_17798	NA	unknown function
UHGV-1963497_15	eggNOG-mapper	139871.A9D9M2_9VIRU	NA	NA
UHGV-1963497_16	PHROG	phrog_8594	NA	unknown function
UHGV-1963497_17	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1963497_17	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1963497_17	UniRef90	UniRef90_A0A346MRL2	Phage antirepressor Ant	NA
UHGV-1963497_17	eggNOG-mapper	257314.LJ_0302	Phage antirepressor protein KilAC domain	NA
UHGV-1963497_17	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1963497_17	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1963497_17	COG	COG3617	Prophage antirepressor	NA
UHGV-1963497_17	Structural annotation	PF02498, PF03374, TIGR02681, COG3645, COG3561	NA	NA
UHGV-1963497_18	PHROG	phrog_35711	NA	unknown function
UHGV-1963497_19	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1963497_19	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1963497_19	UniRef90	UniRef90_Q20DG0	Putative transcriptional regulator	NA
UHGV-1963497_19	eggNOG-mapper	363555.Q20DG0_9CAUD	sequence-specific DNA binding	NA
UHGV-1963497_19	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1963497_19	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1963497_19	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1963497_20	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1963497_20	UniRef90	UniRef90_A0A833CGZ4	HTH crp-type domain-containing protein	NA
UHGV-1963497_20	eggNOG-mapper	363555.Q20DG1_9CAUD	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-1963497_20	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-1963497_20	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-1963497_20	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-1963497_20	Structural annotation	PF13635, MF_01909, TIGR02220, NF040939, COG1846	NA	NA
UHGV-1963497_21	PHROG	phrog_8492	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1963497_21	UniRef90	UniRef90_A0A346MRL6	NA	NA
UHGV-1963497_21	eggNOG-mapper	363555.Q20DG2_9CAUD	NA	NA
UHGV-1963497_21	Pfam	PF06378	NA	DUF1071
UHGV-1963497_21	Structural annotation	PF06378, TIGR00607	NA	NA
UHGV-1963497_22	PHROG	phrog_7634	NA	unknown function
UHGV-1963497_23	PHROG	phrog_16169	NA	unknown function
UHGV-1963497_23	eggNOG-mapper	363555.Q20DG4_9CAUD	NA	NA
UHGV-1963497_24	PHROG	phrog_15265	recombinase	other
UHGV-1963497_24	UniRef90	UniRef90_F4AH01	Putative recombination protein	NA
UHGV-1963497_24	eggNOG-mapper	363555.Q20DG5_9CAUD	NA	NA
UHGV-1963497_25	PHROG	phrog_18877	NA	unknown function
UHGV-1963497_26	PHROG	phrog_823	NA	unknown function
UHGV-1963497_26	UniRef90	UniRef90_UPI0001A4339F	NA	NA
UHGV-1963497_26	eggNOG-mapper	324831.LGAS_0577	NA	NA
UHGV-1963497_26	Pfam	PF05595	NA	DUF771
UHGV-1963497_27	UniRef90	UniRef90_A9D9J9	HTH cro/C1-type domain-containing protein	NA
UHGV-1963497_27	eggNOG-mapper	1423758.BN55_01555	Helix-turn-helix XRE-family like proteins	NA
UHGV-1963497_27	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1963497_27	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-1963497_28	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1963497_28	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1963497_28	UniRef90	UniRef90_A9D9J6	Cl repressor	NA
UHGV-1963497_28	eggNOG-mapper	139871.A9D9J6_9VIRU	protein disulfide oxidoreductase activity	NA
UHGV-1963497_28	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1963497_28	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-1963497_29	PHROG	phrog_87	metallo-protease	other
UHGV-1963497_29	UniRef90	UniRef90_A9D9J3	Peptidase_M78 domain-containing protein	NA
UHGV-1963497_29	eggNOG-mapper	139871.A9D9J3_9VIRU	Pfam:Peptidase_M78	NA
UHGV-1963497_29	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1963497_29	Structural annotation	PF13058, MF_00745, COG2856	NA	NA
UHGV-1963497_30	PHROG	phrog_2700	NA	unknown function
UHGV-1963497_30	UniRef90	UniRef90_A0A8A8LAE9	PH domain-containing protein	NA
UHGV-1963497_30	eggNOG-mapper	1545701.LACWKB10_0369	Bacterial PH domain	NA
UHGV-1963497_30	Pfam	PF14471	NA	DUF4428
UHGV-1963497_30	Pfam	PF14470	Bacterial PH domain	bPH_3
UHGV-1963497_30	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-1963497_30	Structural annotation	PF14470, COG3402	NA	NA
UHGV-1963497_31	KOfam	K14059	int; integrase	NA
UHGV-1963497_31	PHROG	phrog_1	integrase	integration and excision
UHGV-1963497_31	UniRef90	UniRef90_UPI000B99746D	site-specific integrase	NA
UHGV-1963497_31	eggNOG-mapper	1545701.LACWKB10_1145	Belongs to the 'phage' integrase family	NA
UHGV-1963497_31	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-1963497_31	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-1963497_31	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1963497_31	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1963497_31	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-1963497_33	KOfam	K07273	acm; lysozyme	NA
UHGV-1963497_33	PHROG	phrog_291	endolysin	lysis
UHGV-1963497_33	UniRef90	UniRef90_UPI00019C68D0	SH3 domain-containing protein	NA
UHGV-1963497_33	eggNOG-mapper	257314.LJ_0329	Glycosyl hydrolases family 25	NA
UHGV-1963497_33	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1963497_33	Pfam	PF08460	Bacterial SH3 domain	SH3_5
UHGV-1963497_33	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1963497_33	Structural annotation	PF01183, PF08460, MF_00496, NF033202, NF009621, COG3757	NA	NA
UHGV-1963497_34	PHROG	phrog_10813	holin	lysis
UHGV-1963497_34	UniRef90	UniRef90_A0A558KL22	Phage holin	NA
UHGV-1963497_34	eggNOG-mapper	257314.LJ_1419	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-1963497_34	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-1963497_34	NCBIFam	TIGR01673.1	phage holin	NA
UHGV-1963497_34	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-1963497_35	PHROG	phrog_4325	holin	lysis
UHGV-1963497_35	eggNOG-mapper	97137.C821_00023	NA	NA
UHGV-1963497_35	Structural annotation	PF14248, COG2259	NA	NA
UHGV-1963497_36	KOfam	K06330	cotH; spore coat protein H	NA
UHGV-1963497_36	PHROG	phrog_38470	NA	unknown function
UHGV-1963497_36	UniRef90	UniRef90_A0A839H5U5	CotH kinase family protein	NA
UHGV-1963497_36	eggNOG-mapper	257314.LJ_1423	GDSL-like Lipase/Acylhydrolase	NA
UHGV-1963497_36	Pfam	PF08757	CotH kinase protein	CotH
UHGV-1963497_36	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-1963497_37	PHROG	phrog_37807	NA	unknown function
UHGV-1963497_37	eggNOG-mapper	257314.LJ_1424	NA	NA
UHGV-1963497_38	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-1963497_38	PHROG	phrog_3558	tail protein	tail
UHGV-1963497_38	UniRef90	UniRef90_C2E6W8	Peptidase, M23 family	NA
UHGV-1963497_38	eggNOG-mapper	257314.LJ_1425	Prophage endopeptidase tail	NA
UHGV-1963497_38	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1963497_38	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1963497_38	COG	COG3953	SLT domain protein	NA
UHGV-1963497_38	Structural annotation	PF14594, PF01551, PF06605, TIGR01665, COG4379, COG0739	NA	NA
UHGV-1963497_39	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1963497_39	UniRef90	UniRef90_A0A256SIK9	Phage tail protein	NA
UHGV-1963497_39	eggNOG-mapper	257314.LJ_1425c	phage tail	NA
UHGV-1963497_39	COG	COG4722	Phage-related protein YomH	NA
UHGV-1963497_39	Structural annotation	PF20195, PF21621, TIGR01633, COG4722	NA	NA
UHGV-1963497_40	PHROG	phrog_5493	tail length tape measure protein	tail
UHGV-1963497_40	UniRef90	UniRef90_A0A1V3XZT9	Phage tail tape measure protein	NA
UHGV-1963497_40	eggNOG-mapper	891391.LAC30SC_06495	Phage tail tape measure protein	NA
UHGV-1963497_40	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1963497_40	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1963497_40	COG	COG5283	Phage-related tail protein	NA
UHGV-1963497_40	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-1963497_41	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-1963497_41	UniRef90	UniRef90_Q037E6	NA	NA
UHGV-1963497_41	eggNOG-mapper	891391.LAC30SC_06500	NA	NA
UHGV-1963497_42	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-1963497_42	UniRef90	UniRef90_A0A0F4LDK3	NA	NA
UHGV-1963497_42	eggNOG-mapper	891391.LAC30SC_06505	Phage tail assembly chaperone protein, TAC	NA
UHGV-1963497_42	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-1963497_42	Structural annotation	PF12363	NA	NA
UHGV-1963497_43	PHROG	phrog_238	major tail protein	tail
UHGV-1963497_43	UniRef90	UniRef90_A0A1V3Y0C0	Phage major tail protein, TP901-1 family	NA
UHGV-1963497_43	eggNOG-mapper	891391.LAC30SC_06510	Phage tail tube protein	NA
UHGV-1963497_43	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-1963497_43	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-1963497_43	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1963497_44	PHROG	phrog_176	tail terminator	connector
UHGV-1963497_44	UniRef90	UniRef90_F0TFD3	Phage-related major structural protein	NA
UHGV-1963497_44	eggNOG-mapper	891391.LAC30SC_06515	NA	NA
UHGV-1963497_44	Structural annotation	PF11367	NA	NA
UHGV-1963497_45	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1963497_45	UniRef90	UniRef90_UPI0018AC3010	HK97 gp10 family phage protein	NA
UHGV-1963497_45	eggNOG-mapper	891391.LAC30SC_06520	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1963497_45	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1963497_45	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-1963497_46	PHROG	phrog_348	minor head protein	head and packaging
UHGV-1963497_46	eggNOG-mapper	891391.LAC30SC_06525	NA	NA
UHGV-1963497_46	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1963497_47	PHROG	phrog_132	head-tail adaptor	connector
UHGV-1963497_47	UniRef90	UniRef90_A0A4Z0GD50	Phage head-tail connector protein	NA
UHGV-1963497_47	eggNOG-mapper	257314.LJ_1432	Phage gp6-like head-tail connector protein	NA
UHGV-1963497_47	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1963497_47	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1963497_48	PHROG	phrog_544	major head protein	head and packaging
UHGV-1963497_48	UniRef90	UniRef90_A0A0F4LGI6	NA	NA
UHGV-1963497_48	eggNOG-mapper	1567453.A0A0A1ELG8_9CAUD	NA	NA
UHGV-1963497_48	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-1963497_49	PHROG	phrog_2932	head scaffolding protein	head and packaging
UHGV-1963497_49	UniRef90	UniRef90_UPI0011090D4F	NA	NA
UHGV-1963497_49	eggNOG-mapper	1567453.A0A0A1EN85_9CAUD	aminoacyl-tRNA ligase activity	NA
UHGV-1963497_49	Pfam	PF14265	NA	DUF4355
UHGV-1963497_49	Structural annotation	PF14265	NA	NA
UHGV-1963497_51	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1963497_51	UniRef90	UniRef90_UPI0011081A09	minor capsid protein	NA
UHGV-1963497_51	eggNOG-mapper	891391.LAC30SC_06550	Phage Mu protein F like protein	NA
UHGV-1963497_51	COG	COG2369	NA	NA
UHGV-1963497_51	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-1963497_53	PHROG	phrog_64	portal protein	head and packaging
UHGV-1963497_53	eggNOG-mapper	891391.LAC30SC_06555	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1963497_53	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1963497_54	PHROG	phrog_64	portal protein	head and packaging
UHGV-1963497_54	UniRef90	UniRef90_A0A6M3BEX2	SPP1 family portal protein	NA
UHGV-1963497_54	eggNOG-mapper	257314.LJ_1438	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1963497_54	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1963497_54	NCBIFam	TIGR01538.1	phage portal protein	NA