UHGV-1964852

Genome information

Genome length 20,425 bps

CDS count 29

Completeness 50.85% (medium-quality)

geNomad score 0.9814

Prediction confidence Confident

Genome information
Genome ID	UHGV-1964852
vOTU ID	vOTU-032766
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300014971\|Ga0134442_1000528\|provirus_282_20706
BioSample	SAMN03922522
Country	Germany
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	50.85% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9814
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.94
Jumbo phage	No

Genome content
Genome length	20,425 bps
GC content	48.90%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	29
CDS density	92.23%
Average CDS length	652.66 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1964852_1	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1964852_1	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1964852_1	UniRef90	UniRef90_A0A416L200	Terminase small subunit	NA
UHGV-1964852_1	eggNOG-mapper	1298920.KI911353_gene4857	Terminase small subunit	NA
UHGV-1964852_1	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1964852_1	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1964852_1	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1964852_2	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1964852_2	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1964852_2	UniRef90	UniRef90_A0A3R6QNE9	Terminase	NA
UHGV-1964852_2	eggNOG-mapper	1304866.K413DRAFT_0811	Phage terminase, large subunit, PBSX family	NA
UHGV-1964852_2	COG	COG1783	Phage terminase large subunit	NA
UHGV-1964852_2	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1964852_3	PHROG	phrog_533	portal protein	head and packaging
UHGV-1964852_3	UniRef90	UniRef90_A0A3R6U7L6	Capsid protein	NA
UHGV-1964852_3	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-1964852_3	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1964852_4	PHROG	phrog_25639	NA	unknown function
UHGV-1964852_4	eggNOG-mapper	742740.HMPREF9474_03502	NA	NA
UHGV-1964852_5	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1964852_5	UniRef90	UniRef90_A0A416KE36	Minor capsid protein	NA
UHGV-1964852_5	eggNOG-mapper	742740.HMPREF9474_03503	Phage minor capsid protein 2	NA
UHGV-1964852_5	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1964852_5	COG	COG2369	NA	NA
UHGV-1964852_5	Structural annotation	PF06152	NA	NA
UHGV-1964852_7	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-1964852_7	eggNOG-mapper	742740.HMPREF9474_03504	NA	NA
UHGV-1964852_8	PHROG	phrog_422	major head protein	head and packaging
UHGV-1964852_8	UniRef90	UniRef90_A0A3R6QST7	Phage capsid protein	NA
UHGV-1964852_8	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-1964852_8	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1964852_9	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1964852_9	eggNOG-mapper	1298920.KI911353_gene4848	NA	NA
UHGV-1964852_10	PHROG	phrog_8710	NA	unknown function
UHGV-1964852_10	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-1964852_10	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-1964852_11	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1964852_11	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-1964852_12	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-1964852_12	UniRef90	UniRef90_UPI001D068DAC	minor capsid protein	NA
UHGV-1964852_12	eggNOG-mapper	742740.HMPREF9474_03510	NA	NA
UHGV-1964852_12	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-1964852_12	Structural annotation	PF12691, COG5003	NA	NA
UHGV-1964852_13	PHROG	phrog_820	major tail protein	tail
UHGV-1964852_13	eggNOG-mapper	742740.HMPREF9474_03511	domain, Protein	NA
UHGV-1964852_13	COG	COG5492	NA	NA
UHGV-1964852_13	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1964852_14	PHROG	phrog_8300	NA	unknown function
UHGV-1964852_14	eggNOG-mapper	742740.HMPREF9474_03512	NA	NA
UHGV-1964852_14	Structural annotation	PF06854	NA	NA
UHGV-1964852_15	PHROG	phrog_8355	NA	unknown function
UHGV-1964852_15	UniRef90	UniRef90_UPI0011579C35	Gp15 family bacteriophage protein	NA
UHGV-1964852_15	eggNOG-mapper	742740.HMPREF9474_03513	NA	NA
UHGV-1964852_15	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1964852_15	Structural annotation	PF06854	NA	NA
UHGV-1964852_16	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1964852_16	UniRef90	UniRef90_A0A174WQ97	Phage-like protein	NA
UHGV-1964852_16	eggNOG-mapper	742740.HMPREF9474_03514	tape measure	NA
UHGV-1964852_16	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1964852_16	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-1964852_17	PHROG	phrog_1194	NA	unknown function
UHGV-1964852_17	eggNOG-mapper	742733.HMPREF9469_01808	NA	NA
UHGV-1964852_17	Pfam	PF20458	NA	DUF6711
UHGV-1964852_17	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-1964852_18	PHROG	phrog_18190	NA	unknown function
UHGV-1964852_18	eggNOG-mapper	1449050.JNLE01000003_gene3879	NA	NA
UHGV-1964852_19	PHROG	phrog_18190	NA	unknown function
UHGV-1964852_19	UniRef90	UniRef90_A0A3R6M570	Peptidase S74 domain-containing protein	NA
UHGV-1964852_19	eggNOG-mapper	397290.C810_05239	NA	NA
UHGV-1964852_19	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-1964852_21	PHROG	phrog_2012	minor tail protein	tail
UHGV-1964852_22	PHROG	phrog_12931	NA	unknown function
UHGV-1964852_22	eggNOG-mapper	1298920.KI911353_gene2672	NA	NA
UHGV-1964852_23	UniRef90	UniRef90_A0A3R6QNF9	ASCH domain-containing protein	NA
UHGV-1964852_23	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-1964852_25	PHROG	phrog_4105	NA	unknown function
UHGV-1964852_25	eggNOG-mapper	657322.FPR_27220	NA	NA
UHGV-1964852_26	PHROG	phrog_1129	holin	lysis
UHGV-1964852_26	UniRef90	UniRef90_A0A3R6U6I1	Enolase	NA
UHGV-1964852_26	eggNOG-mapper	1321782.HMPREF1986_00360	NA	NA
UHGV-1964852_26	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1964852_26	Structural annotation	PF06946	NA	NA
UHGV-1964852_27	PHROG	phrog_1048	NA	unknown function
UHGV-1964852_27	UniRef90	UniRef90_UPI000E44ABF0	NA	NA
UHGV-1964852_27	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-1964852_27	Pfam	PF11195	NA	DUF2829
UHGV-1964852_27	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-1964852_27	Structural annotation	PF11195	NA	NA
UHGV-1964852_28	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-1964852_28	PHROG	phrog_2649	endolysin	lysis
UHGV-1964852_28	UniRef90	UniRef90_A0A416FC87	Peptidase_M15_4 domain-containing protein	NA
UHGV-1964852_28	eggNOG-mapper	411902.CLOBOL_06235	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-1964852_28	Pfam	PF13539	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
UHGV-1964852_28	Pfam	PF01473	Putative cell wall binding repeat	Choline_bind_1
UHGV-1964852_28	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-1964852_28	Structural annotation	PF02557, PF19127, MF_01924, NF007557, TIGR04035, COG2173	NA	NA
UHGV-1964852_29	KOfam	K18890	mdlB, smdB; ATP-binding cassette, subfamily B, multidrug efflux pump	NA
UHGV-1964852_29	PHROG	phrog_2392	ABC transporter	moron, auxiliary metabolic gene and host takeover
UHGV-1964852_29	UniRef90	UniRef90_A0A416L2U3	ATP-binding cassette domain-containing protein	NA
UHGV-1964852_29	eggNOG-mapper	483218.BACPEC_02515	NA	NA
UHGV-1964852_29	Pfam	PF00005	ABC transporter	ABC_tran
UHGV-1964852_29	COG	COG1132	ABC-type multidrug transport system, ATPase and permease component	NA