UHGV-1965171

Genome information

Genome length 36,975 bps

CDS count 47

Completeness 84.23% (medium-quality)

geNomad score 0.9818

Prediction confidence Confident

Genome information
Genome ID	UHGV-1965171
vOTU ID	vOTU-017016
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300015188\|Ga0183237_135232\|provirus_95586_132560
BioSample	NA
Country	Bangladesh
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.23% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	35
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9818
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	75.58
Jumbo phage	No

Genome content
Genome length	36,975 bps
GC content	38.79%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	92.41%
Average CDS length	730.15 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1965171_1	UniRef90	UniRef90_UPI00195BF7E8	IS1595 family transposase	NA
UHGV-1965171_1	eggNOG-mapper	500633.CLOHIR_00113	NA	NA
UHGV-1965171_1	Pfam	PF12762	ISXO2-like transposase domain	DDE_Tnp_IS1595
UHGV-1965171_1	NCBIFam	NF033547.1	IS1595 family transposase	NA
UHGV-1965171_1	COG	COG3677	Transposase InsA	NA
UHGV-1965171_2	KOfam	K07273	acm; lysozyme	NA
UHGV-1965171_2	PHROG	phrog_291	endolysin	lysis
UHGV-1965171_2	UniRef90	UniRef90_UPI001BD9B056	peptidoglycan endolysin	NA
UHGV-1965171_2	eggNOG-mapper	372457.A7DYC5_9CAUD	peptidoglycan catabolic process	NA
UHGV-1965171_2	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1965171_2	Structural annotation	PF01183, COG3757	NA	NA
UHGV-1965171_3	PHROG	phrog_962	holin	lysis
UHGV-1965171_3	UniRef90	UniRef90_A0A3E2SGW6	Phage holin	NA
UHGV-1965171_3	eggNOG-mapper	1035189.HMPREF9954_0325	Bacteriophage holin	NA
UHGV-1965171_3	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-1965171_3	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-1965171_3	COG	COG5546	NA	NA
UHGV-1965171_3	Structural annotation	COG5546	NA	NA
UHGV-1965171_4	PHROG	phrog_1296	holin	lysis
UHGV-1965171_4	UniRef90	UniRef90_A0A139R3M5	NA	NA
UHGV-1965171_6	PHROG	phrog_1554	NA	unknown function
UHGV-1965171_6	UniRef90	UniRef90_A0A6F9N099	NA	NA
UHGV-1965171_6	Pfam	PF07104	NA	DUF1366
UHGV-1965171_6	Structural annotation	PF07104	NA	NA
UHGV-1965171_7	UniRef90	UniRef90_A0A3S5DNE7	NA	NA
UHGV-1965171_8	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-1965171_8	PHROG	phrog_3095	tail protein with endopeptidase activity	other
UHGV-1965171_8	UniRef90	UniRef90_UPI001BD9405E	phage tail protein	NA
UHGV-1965171_8	eggNOG-mapper	1123302.KB904182_gene60	Prophage endopeptidase tail	NA
UHGV-1965171_8	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1965171_8	COG	COG1511	NA	NA
UHGV-1965171_9	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1965171_9	UniRef90	UniRef90_A0A447UCS7	NA	NA
UHGV-1965171_9	eggNOG-mapper	1123302.KB904182_gene61	Phage tail protein	NA
UHGV-1965171_9	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1965171_9	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-1965171_10	PHROG	phrog_1204	tail protein	tail
UHGV-1965171_10	UniRef90	UniRef90_A0A2I1YIE8	Phage tail tape measure protein	NA
UHGV-1965171_10	eggNOG-mapper	1158614.I592_02260	nuclear chromosome segregation	NA
UHGV-1965171_10	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1965171_10	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1965171_10	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1965171_10	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-1965171_11	PHROG	phrog_2567	NA	unknown function
UHGV-1965171_11	UniRef90	UniRef90_A0A447UCR7	NA	NA
UHGV-1965171_12	PHROG	phrog_183	tail chaperone protein	tail
UHGV-1965171_12	UniRef90	UniRef90_A0A3R9KJE8	NA	NA
UHGV-1965171_12	eggNOG-mapper	1123302.KB904182_gene63	Phage tail assembly chaperone protein, TAC	NA
UHGV-1965171_12	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-1965171_12	Structural annotation	PF12363	NA	NA
UHGV-1965171_13	PHROG	phrog_238	major tail protein	tail
UHGV-1965171_13	UniRef90	UniRef90_A0A3E2SGX7	Phage major tail protein, TP901-1 family	NA
UHGV-1965171_13	eggNOG-mapper	1123302.KB904182_gene64	domain, Protein	NA
UHGV-1965171_13	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-1965171_13	COG	COG5492	NA	NA
UHGV-1965171_13	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1965171_14	PHROG	phrog_176	tail terminator	connector
UHGV-1965171_14	UniRef90	UniRef90_J7MAY0	NA	NA
UHGV-1965171_14	eggNOG-mapper	1123302.KB904182_gene65	NA	NA
UHGV-1965171_14	Structural annotation	PF06141, MF_00281, COG0016	NA	NA
UHGV-1965171_15	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1965171_15	UniRef90	UniRef90_A0A3E2SGX9	HK97 gp10 family phage protein	NA
UHGV-1965171_15	eggNOG-mapper	1123302.KB904182_gene66	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1965171_15	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1965171_15	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1965171_15	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-1965171_16	PHROG	phrog_348	minor head protein	head and packaging
UHGV-1965171_16	eggNOG-mapper	1123302.KB904182_gene67	NA	NA
UHGV-1965171_16	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1965171_17	PHROG	phrog_132	head-tail adaptor	connector
UHGV-1965171_17	UniRef90	UniRef90_A0A1I7JLB0	Phage gp6-like head-tail connector protein	NA
UHGV-1965171_17	eggNOG-mapper	1123302.KB904182_gene68	Phage gp6-like head-tail connector protein	NA
UHGV-1965171_17	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1965171_17	Structural annotation	PF05135	NA	NA
UHGV-1965171_18	PHROG	phrog_5279	NA	unknown function
UHGV-1965171_18	UniRef90	UniRef90_A0A447UCR4	NA	NA
UHGV-1965171_19	PHROG	phrog_29	major head protein	head and packaging
UHGV-1965171_19	UniRef90	UniRef90_A0A4D6A5D1	Major capsid protein	NA
UHGV-1965171_19	eggNOG-mapper	1123315.AUIP01000003_gene244	Phage major capsid protein E	NA
UHGV-1965171_19	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-1965171_19	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-1965171_20	PHROG	phrog_909	major head protein	head and packaging
UHGV-1965171_20	UniRef90	UniRef90_A0A4D6ANB6	Major capsid protein	NA
UHGV-1965171_20	eggNOG-mapper	1123302.KB904182_gene70	NA	NA
UHGV-1965171_20	Structural annotation	PF02924	NA	NA
UHGV-1965171_21	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-1965171_21	UniRef90	UniRef90_A0A3L9DSR8	NA	NA
UHGV-1965171_21	eggNOG-mapper	1123315.AUIP01000003_gene242	NA	NA
UHGV-1965171_21	Pfam	PF14265	NA	DUF4355
UHGV-1965171_21	Structural annotation	PF14265	NA	NA
UHGV-1965171_22	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-1965171_22	UniRef90	UniRef90_A0A4D6A5U5	Phage_Mu_F domain-containing protein	NA
UHGV-1965171_22	eggNOG-mapper	1123302.KB904182_gene74	Phage Mu protein F like protein	NA
UHGV-1965171_22	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1965171_22	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1965171_22	COG	COG2369	NA	NA
UHGV-1965171_22	Structural annotation	PF04233, PF18812, TIGR01641, COG2369	NA	NA
UHGV-1965171_23	PHROG	phrog_64	portal protein	head and packaging
UHGV-1965171_23	UniRef90	UniRef90_A0A1I7JLS6	Phage portal protein, SPP1 family	NA
UHGV-1965171_23	eggNOG-mapper	1123302.KB904182_gene75	Phage portal protein, SPP1 family	NA
UHGV-1965171_23	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1965171_23	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-1965171_23	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-1965171_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1965171_24	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1965171_24	UniRef90	UniRef90_A0A1I7JLS5	Phage terminase, large subunit, PBSX family	NA
UHGV-1965171_24	eggNOG-mapper	1123315.AUIP01000003_gene234	Phage terminase, large subunit, PBSX family	NA
UHGV-1965171_24	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1965171_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-1965171_24	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1965171_25	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-1965171_25	UniRef90	UniRef90_A0A3E2SH31	Helix-turn-helix domain-containing protein	NA
UHGV-1965171_25	eggNOG-mapper	413066.A1EAE0_9CAUD	endonuclease activity	NA
UHGV-1965171_25	Structural annotation	PF07141	NA	NA
UHGV-1965171_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1965171_26	UniRef90	UniRef90_A0A2I1YI57	Transcriptional regulator	NA
UHGV-1965171_26	eggNOG-mapper	1069533.Sinf_0781	Transcriptional regulator, RinA family	NA
UHGV-1965171_26	NCBIFam	TIGR01636.1	phage transcriptional regulator, RinA family	NA
UHGV-1965171_26	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-1965171_28	PHROG	phrog_1489	NA	unknown function
UHGV-1965171_28	UniRef90	UniRef90_A0A447UCQ8	Phage associated protein	NA
UHGV-1965171_29	PHROG	phrog_3745	NA	unknown function
UHGV-1965171_29	UniRef90	UniRef90_A0A447UCM2	Phage associated protein	NA
UHGV-1965171_30	Structural annotation	PF20432, MF_00535, NF040507, COG1476	NA	NA
UHGV-1965171_31	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1965171_31	UniRef90	UniRef90_A0A3E2SGY5	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1965171_31	eggNOG-mapper	1123302.KB904182_gene84	crossover junction endodeoxyribonuclease RusA	NA
UHGV-1965171_31	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1965171_31	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1965171_31	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1965171_32	PHROG	phrog_121	NA	unknown function
UHGV-1965171_32	UniRef90	UniRef90_UPI000735A58E	NA	NA
UHGV-1965171_32	eggNOG-mapper	1123315.AUIP01000003_gene225	NA	NA
UHGV-1965171_32	Pfam	PF07852	NA	DUF1642
UHGV-1965171_32	Structural annotation	PF07852	NA	NA
UHGV-1965171_33	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-1965171_33	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-1965171_33	UniRef90	UniRef90_A0A3E2SGZ1	DNA primase	NA
UHGV-1965171_33	eggNOG-mapper	1123302.KB904182_gene86	Primase C terminal 2 (PriCT-2)	NA
UHGV-1965171_33	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-1965171_33	Pfam	PF13481	AAA domain	AAA_25
UHGV-1965171_33	COG	COG3598	RecA-family ATPase	NA
UHGV-1965171_33	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-1965171_34	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-1965171_34	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1965171_34	UniRef90	UniRef90_A0A447UCK4	DEAD/DEAH box helicase	NA
UHGV-1965171_34	eggNOG-mapper	1123315.AUIP01000003_gene216	helicase	NA
UHGV-1965171_34	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-1965171_34	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-1965171_34	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1965171_34	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-1965171_34	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-1965171_35	PHROG	phrog_2698	NA	unknown function
UHGV-1965171_35	UniRef90	UniRef90_A0A3S4JK96	NA	NA
UHGV-1965171_35	eggNOG-mapper	1123302.KB904182_gene88	NA	NA
UHGV-1965171_35	Structural annotation	PF17426, NF005674	NA	NA
UHGV-1965171_36	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1965171_36	UniRef90	UniRef90_A0A3S4I583	NA	NA
UHGV-1965171_36	eggNOG-mapper	1123304.AQYA01000037_gene196	AAA domain	NA
UHGV-1965171_36	Pfam	PF13479	AAA domain	AAA_24
UHGV-1965171_36	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-1965171_37	PHROG	phrog_2486	NA	unknown function
UHGV-1965171_37	UniRef90	UniRef90_A0A116NZT0	NA	NA
UHGV-1965171_38	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-1965171_38	PHROG	phrog_1499	NA	unknown function
UHGV-1965171_38	UniRef90	UniRef90_A0A4D6A7Z1	AAA_23 domain-containing protein	NA
UHGV-1965171_38	eggNOG-mapper	1123315.AUIP01000003_gene213	AAA domain	NA
UHGV-1965171_38	Pfam	PF13476	AAA domain	AAA_23
UHGV-1965171_38	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1965171_38	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-1965171_39	PHROG	phrog_5118	NA	unknown function
UHGV-1965171_40	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1965171_40	PHROG	phrog_5666	NA	unknown function
UHGV-1965171_40	UniRef90	UniRef90_A0A2I1YI46	XRE family transcriptional regulator	NA
UHGV-1965171_40	eggNOG-mapper	764299.STRIC_0083	Transcriptional	NA
UHGV-1965171_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1965171_40	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1965171_40	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1965171_42	PHROG	phrog_904	excisionase	integration and excision
UHGV-1965171_42	UniRef90	UniRef90_A0A2I1YI68	Excisionase	NA
UHGV-1965171_42	eggNOG-mapper	1069533.Sinf_0769	NA	NA
UHGV-1965171_42	Structural annotation	PF20063	NA	NA
UHGV-1965171_45	PHROG	phrog_1733	NA	unknown function
UHGV-1965171_45	UniRef90	UniRef90_Q8RLB5	Temperate phage and flanking sequences, isolate SK778	NA
UHGV-1965171_45	eggNOG-mapper	646413.C5IUM1_9CAUD	NA	NA
UHGV-1965171_46	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1965171_46	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-1965171_46	UniRef90	UniRef90_A0A1G9KIG0	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1965171_46	eggNOG-mapper	1314.HKU360_01664	Helix-turn-helix XRE-family like proteins	NA
UHGV-1965171_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1965171_46	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1965171_46	Structural annotation	PF01381, NF041951, COG1476	NA	NA