UHGV-1965558

Genome information

Genome length 32,158 bps

CDS count 50

Completeness 90.66% (high-quality)

geNomad score 0.9708

Prediction confidence Confident

Genome information
Genome ID	UHGV-1965558
vOTU ID	vOTU-065614
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300014954\|Ga0169837_100288\|provirus_1_42947
BioSample	SAMEA2580249
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.66% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9708
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.32
Jumbo phage	No

Genome content
Genome length	32,158 bps
GC content	40.93%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	92.35%
Average CDS length	596.94 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1965558_2	PHROG	phrog_1194	NA	unknown function
UHGV-1965558_2	UniRef90	UniRef90_A0A8D9PDT1	YolD-like protein	NA
UHGV-1965558_2	eggNOG-mapper	1449050.JNLE01000003_gene3880	NA	NA
UHGV-1965558_2	Pfam	PF20458	NA	DUF6711
UHGV-1965558_2	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-1965558_3	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-1965558_3	UniRef90	UniRef90_A0A2N0UYY1	Phage-related protein	NA
UHGV-1965558_3	eggNOG-mapper	1160721.RBI_II00528	Phage tail tape measure protein, TP901 family	NA
UHGV-1965558_3	COG	COG1006	Multisubunit Na+/H+ antiporter, MnhC subunit	NA
UHGV-1965558_3	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-1965558_5	PHROG	phrog_8300	NA	unknown function
UHGV-1965558_5	eggNOG-mapper	33035.JPJF01000093_gene2245	NA	NA
UHGV-1965558_5	Structural annotation	PF06854	NA	NA
UHGV-1965558_6	PHROG	phrog_820	major tail protein	tail
UHGV-1965558_6	eggNOG-mapper	1282664.H354_06691	NA	NA
UHGV-1965558_6	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1965558_7	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-1965558_7	UniRef90	UniRef90_UPI001D0627B3	minor capsid protein	NA
UHGV-1965558_7	eggNOG-mapper	1123263.AUKY01000051_gene1075	NA	NA
UHGV-1965558_7	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-1965558_7	Structural annotation	PF12691, COG5003	NA	NA
UHGV-1965558_8	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1965558_8	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-1965558_9	PHROG	phrog_8710	NA	unknown function
UHGV-1965558_9	eggNOG-mapper	33035.JPJF01000093_gene2249	NA	NA
UHGV-1965558_9	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-1965558_10	eggNOG-mapper	483218.BACPEC_01153	NA	NA
UHGV-1965558_11	PHROG	phrog_1378	NA	unknown function
UHGV-1965558_11	eggNOG-mapper	552396.HMPREF0863_01636	NA	NA
UHGV-1965558_12	PHROG	phrog_422	major head protein	head and packaging
UHGV-1965558_12	UniRef90	UniRef90_A0A373XYP8	Capsid protein	NA
UHGV-1965558_12	eggNOG-mapper	552396.HMPREF0863_01635	NA	NA
UHGV-1965558_12	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1965558_13	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-1965558_13	eggNOG-mapper	1304866.K413DRAFT_0806	NA	NA
UHGV-1965558_14	PHROG	phrog_2616	NA	unknown function
UHGV-1965558_14	Structural annotation	PF01281	NA	NA
UHGV-1965558_15	PHROG	phrog_31760	NA	unknown function
UHGV-1965558_17	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1965558_17	UniRef90	UniRef90_A0A412UNH8	Minor capsid protein	NA
UHGV-1965558_17	eggNOG-mapper	483218.BACPEC_01158	Phage minor capsid protein 2	NA
UHGV-1965558_17	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1965558_17	COG	COG2369	NA	NA
UHGV-1965558_18	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1965558_18	UniRef90	UniRef90_UPI001E3146C8	phage minor capsid protein	NA
UHGV-1965558_18	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-1965558_18	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-1965558_19	PHROG	phrog_533	portal protein	head and packaging
UHGV-1965558_19	UniRef90	UniRef90_A0A3D0XB31	Capsid protein	NA
UHGV-1965558_19	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-1965558_19	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1965558_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1965558_20	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1965558_20	UniRef90	UniRef90_A0A374N1S8	Terminase	NA
UHGV-1965558_20	eggNOG-mapper	1282664.H354_06621	Phage terminase, large subunit, PBSX family	NA
UHGV-1965558_20	COG	COG1783	Phage terminase large subunit	NA
UHGV-1965558_20	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1965558_21	eggNOG-mapper	1282664.H354_06621	Phage terminase, large subunit, PBSX family	NA
UHGV-1965558_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-1965558_22	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1965558_22	UniRef90	UniRef90_R5J7G4	Putative HNH endonuclease	NA
UHGV-1965558_22	eggNOG-mapper	1527693.A0A096XV21_9CAUD	HNH endonuclease	NA
UHGV-1965558_22	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-1965558_22	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-1965558_22	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1965558_22	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-1965558_22	Structural annotation	PF07453, TIGR01453	NA	NA
UHGV-1965558_23	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1965558_23	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1965558_23	UniRef90	UniRef90_A0A2N0UXP4	Terminase small subunit	NA
UHGV-1965558_23	eggNOG-mapper	1160721.RBI_II00483	DNA packaging	NA
UHGV-1965558_23	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1965558_23	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1965558_23	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1965558_24	Structural annotation	TIGR01636	NA	NA
UHGV-1965558_25	PHROG	phrog_824	NA	unknown function
UHGV-1965558_25	UniRef90	UniRef90_UPI00164A50A6	VRR-NUC domain-containing protein	NA
UHGV-1965558_25	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-1965558_25	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-1965558_27	KOfam	K07317	K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-1965558_27	PHROG	phrog_21201	DNA methyltransferase	other
UHGV-1965558_27	UniRef90	UniRef90_A0A1C6BWK1	Modification methylase VspI	NA
UHGV-1965558_27	eggNOG-mapper	272633.26454020	DNA modification	NA
UHGV-1965558_27	COG	COG1002	Type II restriction/modification system, endonuclease and methylase domains	NA
UHGV-1965558_27	Structural annotation	PF20473, MF_02217, NF001556, COG0742	NA	NA
UHGV-1965558_28	Structural annotation	PF14282, COG5570	NA	NA
UHGV-1965558_29	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-1965558_29	UniRef90	UniRef90_A0A846K3D1	MazG domain-containing protein	NA
UHGV-1965558_29	eggNOG-mapper	1519439.JPJG01000059_gene1914	NA	NA
UHGV-1965558_31	PHROG	phrog_25754	NA	unknown function
UHGV-1965558_31	eggNOG-mapper	97139.C824_00736	NA	NA
UHGV-1965558_31	Structural annotation	PF10842, MF_00436, TIGR02383	NA	NA
UHGV-1965558_35	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-1965558_35	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-1965558_35	UniRef90	UniRef90_A0A2N0ULU7	SF3 helicase domain-containing protein	NA
UHGV-1965558_35	eggNOG-mapper	1410670.JHXF01000015_gene2274	Phage plasmid primase, P4 family	NA
UHGV-1965558_35	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-1965558_35	Pfam	PF19263	NA	DUF5906
UHGV-1965558_35	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-1965558_35	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-1965558_35	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-1965558_35	Structural annotation	PF08706, PF05272, PF02257, MF_04000, NF011296, COG3378, COG4983	NA	NA
UHGV-1965558_36	PHROG	phrog_378	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1965558_36	UniRef90	UniRef90_A0A374ND86	NA	NA
UHGV-1965558_36	eggNOG-mapper	1410670.JHXF01000015_gene2272	NA	NA
UHGV-1965558_36	Pfam	PF05037	NA	DUF669
UHGV-1965558_36	Structural annotation	PF05037, NF004948	NA	NA
UHGV-1965558_37	PHROG	phrog_5702	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1965558_37	UniRef90	UniRef90_A0A374N329	VRR-NUC domain-containing protein	NA
UHGV-1965558_37	eggNOG-mapper	1410670.JHXF01000015_gene2271	VRR_NUC	NA
UHGV-1965558_37	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-1965558_37	Structural annotation	PF03838, MF_00130, NF002585, COG3331	NA	NA
UHGV-1965558_38	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-1965558_38	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1965558_38	UniRef90	UniRef90_A0A374N1T8	Helicase	NA
UHGV-1965558_38	eggNOG-mapper	1410670.JHXF01000015_gene2270	helicase	NA
UHGV-1965558_38	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-1965558_38	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-1965558_38	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1965558_38	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-1965558_38	Structural annotation	PF04851, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-1965558_39	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1965558_39	UniRef90	UniRef90_UPI001A9B3ECC	AAA family ATPase	NA
UHGV-1965558_39	eggNOG-mapper	754027.HMPREF9554_00709	NA	NA
UHGV-1965558_39	Pfam	PF13479	AAA domain	AAA_24
UHGV-1965558_39	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-1965558_40	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-1965558_40	UniRef90	UniRef90_UPI0019171ADA	siphovirus Gp157 family protein	NA
UHGV-1965558_40	eggNOG-mapper	447909.A6M981_9VIRU	Siphovirus Gp157	NA
UHGV-1965558_40	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-1965558_40	Structural annotation	PF05565, NF002139	NA	NA
UHGV-1965558_41	PHROG	phrog_15609	NA	unknown function
UHGV-1965558_41	UniRef90	UniRef90_A0A373VML2	NA	NA
UHGV-1965558_41	eggNOG-mapper	641112.ACOK01000073_gene2872	NA	NA
UHGV-1965558_41	Structural annotation	PF11300, NF033725	NA	NA
UHGV-1965558_44	PHROG	phrog_6058	NA	unknown function
UHGV-1965558_44	Structural annotation	NF033787	NA	NA
UHGV-1965558_45	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1965558_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1965558_45	UniRef90	UniRef90_A0A412L7W1	XRE family transcriptional regulator	NA
UHGV-1965558_45	eggNOG-mapper	1132442.KB889752_gene869	Helix-turn-helix XRE-family like proteins	NA
UHGV-1965558_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1965558_45	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1965558_46	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1965558_46	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1965558_46	UniRef90	UniRef90_A0A412L7U4	XRE family transcriptional regulator	NA
UHGV-1965558_46	eggNOG-mapper	1111454.HMPREF1250_1028	carbohydrate binding	NA
UHGV-1965558_46	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1965558_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1965558_46	COG	COG2390	DNA-binding transcriptional regulator LsrR, DeoR family	NA
UHGV-1965558_46	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-1965558_47	UniRef90	UniRef90_A0A374E958	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-1965558_47	eggNOG-mapper	1232443.BAIA02000106_gene3117	NA	NA
UHGV-1965558_47	Structural annotation	PF06114	NA	NA
UHGV-1965558_48	eggNOG-mapper	679192.HMPREF9013_1325	NA	NA
UHGV-1965558_49	KOfam	K14059	int; integrase	NA
UHGV-1965558_49	PHROG	phrog_1	integrase	integration and excision
UHGV-1965558_49	UniRef90	UniRef90_A0A1G5CL52	Phage integrase family protein	NA
UHGV-1965558_49	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-1965558_49	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1965558_49	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1965558_49	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-1965558_50	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1965558_50	PHROG	phrog_95	integrase	integration and excision
UHGV-1965558_50	UniRef90	UniRef90_A0A1G5IPF8	Site-specific DNA recombinase	NA
UHGV-1965558_50	eggNOG-mapper	877411.JMMA01000002_gene617	NA	NA
UHGV-1965558_50	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1965558_50	Pfam	PF07508	Recombinase	Recombinase
UHGV-1965558_50	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1965558_50	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1965558_50	Structural annotation	PF07508, PF00239, PF18822, NF041201, COG1961	NA	NA