UHGV-1965704

Genome information

vOTU vOTU-019901

Genome length 30,131 bps

CDS count 43

Completeness 67.40% (medium-quality)

geNomad score 0.9629

Prediction confidence Confident

Genome information
Genome ID	UHGV-1965704
vOTU ID	vOTU-019901
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300014739\|Ga0169799_10076
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.40% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9629
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.53
Jumbo phage	No

Genome content
Genome length	30,131 bps
GC content	28.61%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	88.52%
Average CDS length	621.42 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1965704_2	Structural annotation	PF20505	NA	NA
UHGV-1965704_3	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1965704_3	PHROG	phrog_3088	amidase	lysis
UHGV-1965704_3	UniRef90	UniRef90_UPI000DCFAE7D	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1965704_3	eggNOG-mapper	457396.CSBG_01063	Ami_2	NA
UHGV-1965704_3	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1965704_3	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1965704_4	eggNOG-mapper	1280689.AUJC01000011_gene1537	NA	NA
UHGV-1965704_5	PHROG	phrog_1863	NA	unknown function
UHGV-1965704_5	eggNOG-mapper	1414720.CBYM010000002_gene554	NA	NA
UHGV-1965704_6	eggNOG-mapper	1497679.EP56_10635	NA	NA
UHGV-1965704_7	PHROG	phrog_4577	tail protein	tail
UHGV-1965704_7	UniRef90	UniRef90_A0A091CAK0	Gp19 family putative tail/base plate protein	NA
UHGV-1965704_7	eggNOG-mapper	169963.lmo2284	NA	NA
UHGV-1965704_9	PHROG	phrog_7043	tail protein	tail
UHGV-1965704_9	UniRef90	UniRef90_UPI000DD08AA5	phage tail protein	NA
UHGV-1965704_9	eggNOG-mapper	1499683.CCFF01000005_gene80	Phage minor structural protein	NA
UHGV-1965704_9	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1965704_9	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1965704_9	COG	COG4926	Phage-related protein	NA
UHGV-1965704_10	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1965704_10	UniRef90	UniRef90_UPI000DCFB6E8	phage tail family protein	NA
UHGV-1965704_10	eggNOG-mapper	573061.Clocel_0222	tail component	NA
UHGV-1965704_10	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1965704_10	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1965704_10	COG	COG4722	Phage-related protein YomH	NA
UHGV-1965704_10	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1965704_11	eggNOG-mapper	573061.Clocel_3533	tail tape measure protein	NA
UHGV-1965704_11	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1965704_12	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-1965704_12	UniRef90	UniRef90_UPI000DD03AB1	phage tail tape measure protein	NA
UHGV-1965704_12	eggNOG-mapper	1499683.CCFF01000017_gene2565	tape measure	NA
UHGV-1965704_12	COG	COG1511	NA	NA
UHGV-1965704_13	PHROG	phrog_706	NA	unknown function
UHGV-1965704_13	UniRef90	UniRef90_UPI000DD015CA	bacteriophage Gp15 family protein	NA
UHGV-1965704_13	eggNOG-mapper	1540257.JQMW01000013_gene734	Bacteriophage Gp15 protein	NA
UHGV-1965704_13	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1965704_13	Structural annotation	PF06854	NA	NA
UHGV-1965704_14	PHROG	phrog_4450	NA	unknown function
UHGV-1965704_14	UniRef90	UniRef90_UPI000DCFA8D5	AP endonuclease	NA
UHGV-1965704_14	eggNOG-mapper	1280692.AUJL01000004_gene838	NA	NA
UHGV-1965704_14	Pfam	PF20378	NA	DUF6673
UHGV-1965704_14	Structural annotation	PF20378	NA	NA
UHGV-1965704_15	PHROG	phrog_3099	NA	unknown function
UHGV-1965704_15	eggNOG-mapper	573061.Clocel_3536	NA	NA
UHGV-1965704_15	Structural annotation	PF09393, TIGR02126, COG5437	NA	NA
UHGV-1965704_16	PHROG	phrog_3266	tail completion	connector
UHGV-1965704_16	UniRef90	UniRef90_UPI000DCF807F	chloramphenicol resistance protein	NA
UHGV-1965704_16	eggNOG-mapper	1540257.JQMW01000013_gene737	NA	NA
UHGV-1965704_16	Structural annotation	PF12691	NA	NA
UHGV-1965704_17	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1965704_17	UniRef90	UniRef90_UPI000DD031E8	minor capsid protein	NA
UHGV-1965704_17	eggNOG-mapper	573061.Clocel_3538	Minor capsid protein	NA
UHGV-1965704_17	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1965704_17	Structural annotation	PF11114	NA	NA
UHGV-1965704_18	eggNOG-mapper	318464.IO99_00565	NA	NA
UHGV-1965704_19	PHROG	phrog_3366	NA	unknown function
UHGV-1965704_19	eggNOG-mapper	1540257.JQMW01000013_gene739	NA	NA
UHGV-1965704_19	Pfam	PF20536	NA	DUF6751
UHGV-1965704_19	Structural annotation	PF20536	NA	NA
UHGV-1965704_20	UniRef90	UniRef90_UPI0013C967CA	phage head-tail connector protein	NA
UHGV-1965704_20	eggNOG-mapper	1540257.JQMW01000013_gene740	NA	NA
UHGV-1965704_21	PHROG	phrog_29	major head protein	head and packaging
UHGV-1965704_21	UniRef90	UniRef90_A0A1C6KXX0	Phage major capsid protein E	NA
UHGV-1965704_21	eggNOG-mapper	1280692.AUJL01000004_gene846	Phage major capsid protein E	NA
UHGV-1965704_21	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-1965704_21	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-1965704_22	PHROG	phrog_909	major head protein	head and packaging
UHGV-1965704_22	UniRef90	UniRef90_UPI001D2572A1	head decoration protein	NA
UHGV-1965704_22	eggNOG-mapper	1280692.AUJL01000004_gene847	NA	NA
UHGV-1965704_23	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-1965704_23	UniRef90	UniRef90_UPI00097FD426	NA	NA
UHGV-1965704_23	eggNOG-mapper	1280692.AUJL01000004_gene848	NA	NA
UHGV-1965704_23	Pfam	PF14265	NA	DUF4355
UHGV-1965704_23	Structural annotation	PF14265	NA	NA
UHGV-1965704_25	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1965704_25	UniRef90	UniRef90_UPI000DD075D9	minor capsid protein	NA
UHGV-1965704_25	eggNOG-mapper	1540257.JQMW01000013_gene746	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-1965704_25	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1965704_25	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1965704_25	COG	COG2369	NA	NA
UHGV-1965704_25	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1965704_26	PHROG	phrog_64	portal protein	head and packaging
UHGV-1965704_26	UniRef90	UniRef90_UPI000DCF7CFA	phage portal protein	NA
UHGV-1965704_26	eggNOG-mapper	1280692.AUJL01000004_gene853	portal protein, SPP1 Gp6-like	NA
UHGV-1965704_26	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1965704_26	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1965704_27	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1965704_27	UniRef90	UniRef90_UPI000DD0DAA8	terminase	NA
UHGV-1965704_27	eggNOG-mapper	1415774.U728_1094	chromosome segregation	NA
UHGV-1965704_27	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-1965704_27	COG	COG5410	NA	NA
UHGV-1965704_27	Structural annotation	PF17289, PF03354, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-1965704_28	PHROG	phrog_2538	terminase small subunit	head and packaging
UHGV-1965704_28	UniRef90	UniRef90_UPI000DD08350	phBC6A51 family helix-turn-helix protein	NA
UHGV-1965704_28	eggNOG-mapper	1540257.JQMW01000013_gene750	NA	NA
UHGV-1965704_28	Pfam	PF13022	Helix-turn-helix of insertion element transposase	HTH_Tnp_1_2
UHGV-1965704_28	Structural annotation	PF13022, COG3677	NA	NA
UHGV-1965704_30	eggNOG-mapper	1280692.AUJL01000025_gene2086	NA	NA
UHGV-1965704_34	eggNOG-mapper	1291050.JAGE01000002_gene3960	Beta protein	NA
UHGV-1965704_34	Pfam	PF14350	Beta protein	Beta_protein
UHGV-1965704_35	PHROG	phrog_984	NA	unknown function
UHGV-1965704_35	UniRef90	UniRef90_UPI000DD00A4C	sce7726 family protein	NA
UHGV-1965704_35	eggNOG-mapper	1291050.JAGE01000002_gene3959	NA	NA
UHGV-1965704_35	PADLOC	cll2	NA	NA
UHGV-1965704_35	NCBIFam	NF033832.1	sce7726 family protein	NA
UHGV-1965704_36	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1965704_36	UniRef90	UniRef90_A0A174F044	NA	NA
UHGV-1965704_36	eggNOG-mapper	1280692.AUJL01000025_gene2088	NA	NA
UHGV-1965704_36	Structural annotation	PF08281, MF_00245, NF001068, COG2739	NA	NA
UHGV-1965704_37	eggNOG-mapper	536233.CLO_1639	NA	NA
UHGV-1965704_37	Structural annotation	PF08948, MF_01537, TIGR03711	NA	NA
UHGV-1965704_38	eggNOG-mapper	1280692.AUJL01000011_gene3168	NA	NA
UHGV-1965704_39	PHROG	phrog_5164	NA	unknown function
UHGV-1965704_39	eggNOG-mapper	1196322.A370_02842	NA	NA
UHGV-1965704_39	Structural annotation	PF01503, MF_01020, TIGR03188, COG0140	NA	NA
UHGV-1965704_41	Structural annotation	PF20111, TIGR00686	NA	NA
UHGV-1965704_42	PHROG	phrog_28936	NA	unknown function
UHGV-1965704_42	eggNOG-mapper	573061.Clocel_3563	NA	NA
UHGV-1965704_42	Structural annotation	PF11645, MF_01490, NF040854	NA	NA
UHGV-1965704_43	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1965704_43	UniRef90	UniRef90_V9HH64	Single-stranded DNA-binding protein	NA
UHGV-1965704_43	eggNOG-mapper	457396.CSBG_03291	Single-stranded DNA-binding protein	NA
UHGV-1965704_43	COG	COG0629	Single-stranded DNA-binding protein	NA