UHGV-1966523

Genome information

Genome length 42,692 bps

CDS count 62

Completeness 95.28% (high-quality)

geNomad score 0.9808

Prediction confidence Confident

Genome information
Genome ID	UHGV-1966523
vOTU ID	vOTU-077131
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300014752\|Ga0169821_100096\|provirus_84866_127557
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.28% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9808
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	65.66
Jumbo phage	No

Genome content
Genome length	42,692 bps
GC content	41.58%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	90.94%
Average CDS length	628.36 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1966523_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1966523_1	PHROG	phrog_95	integrase	integration and excision
UHGV-1966523_1	UniRef90	UniRef90_UPI0011853F05	recombinase family protein	NA
UHGV-1966523_1	eggNOG-mapper	411460.RUMTOR_02053	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-1966523_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1966523_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-1966523_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1966523_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1966523_1	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA
UHGV-1966523_2	eggNOG-mapper	411470.RUMGNA_03228	NA	NA
UHGV-1966523_4	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-1966523_4	UniRef90	UniRef90_A0A2N5NVN2	HTH cro/C1-type domain-containing protein	NA
UHGV-1966523_4	eggNOG-mapper	1235790.C805_00012	Helix-turn-helix domain	NA
UHGV-1966523_4	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-1966523_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1966523_4	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1966523_7	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1966523_7	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-1966523_7	UniRef90	UniRef90_UPI0015713293	phage antirepressor KilAC domain-containing protein	NA
UHGV-1966523_7	eggNOG-mapper	411470.RUMGNA_02184	Phage antirepressor protein	NA
UHGV-1966523_7	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-1966523_7	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1966523_7	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-1966523_7	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-1966523_8	eggNOG-mapper	1235790.C805_00014	NA	NA
UHGV-1966523_13	PHROG	phrog_30234	NA	unknown function
UHGV-1966523_13	eggNOG-mapper	411461.DORFOR_00021	NA	NA
UHGV-1966523_15	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1966523_15	UniRef90	UniRef90_A0A6N2RMY2	ERF superfamily protein	NA
UHGV-1966523_15	eggNOG-mapper	1484479.DI14_04910	ERF superfamily	NA
UHGV-1966523_15	Pfam	PF04404	ERF superfamily	ERF
UHGV-1966523_15	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-1966523_16	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1966523_16	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1966523_16	UniRef90	UniRef90_A0A1C5QS41	Single-stranded DNA-binding protein	NA
UHGV-1966523_16	eggNOG-mapper	411460.RUMTOR_02067	NA	NA
UHGV-1966523_16	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1966523_16	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1966523_16	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1966523_16	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1966523_16	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1966523_17	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-1966523_17	UniRef90	UniRef90_A0A1C5UKT4	ERCC4 domain-containing protein	NA
UHGV-1966523_17	eggNOG-mapper	658655.HMPREF0988_02583	ERCC4 domain	NA
UHGV-1966523_17	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-1966523_17	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-1966523_18	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-1966523_18	PHROG	phrog_11992	NA	unknown function
UHGV-1966523_18	UniRef90	UniRef90_UPI00156FEB22	CHC2 zinc finger domain-containing protein	NA
UHGV-1966523_18	eggNOG-mapper	1304866.K413DRAFT_0824	CHC2 zinc finger	NA
UHGV-1966523_18	PADLOC	drt-UG29	DRT	DRT
UHGV-1966523_18	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-1966523_18	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-1966523_18	Structural annotation	PF01807, PF00401	NA	NA
UHGV-1966523_19	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-1966523_19	UniRef90	UniRef90_UPI00156EF603	NA	NA
UHGV-1966523_19	eggNOG-mapper	476272.RUMHYD_01742	NA	NA
UHGV-1966523_19	Pfam	PF06048	NA	DUF927
UHGV-1966523_19	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-1966523_19	COG	COG5519	NA	NA
UHGV-1966523_19	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-1966523_20	PHROG	phrog_23374	NA	unknown function
UHGV-1966523_20	eggNOG-mapper	1256908.HMPREF0373_00664	NA	NA
UHGV-1966523_21	Structural annotation	NF041290	NA	NA
UHGV-1966523_22	PHROG	phrog_17690	NA	unknown function
UHGV-1966523_22	UniRef90	UniRef90_A0A6L5XWF4	3-dehydroquinate synthase	NA
UHGV-1966523_22	eggNOG-mapper	665950.HMPREF1025_02546	NA	NA
UHGV-1966523_24	PHROG	phrog_10714	NA	unknown function
UHGV-1966523_24	UniRef90	UniRef90_R6RDV7	DNA polymerase II large subunit	NA
UHGV-1966523_24	eggNOG-mapper	1120998.AUFC01000030_gene2222	NA	NA
UHGV-1966523_26	Structural annotation	PF02895	NA	NA
UHGV-1966523_27	PHROG	phrog_15198	NA	unknown function
UHGV-1966523_27	UniRef90	UniRef90_UPI001D04EA1D	NA	NA
UHGV-1966523_27	eggNOG-mapper	658655.HMPREF0988_00863	NA	NA
UHGV-1966523_27	Pfam	PF04448	NA	DUF551
UHGV-1966523_27	Structural annotation	PF04448	NA	NA
UHGV-1966523_29	eggNOG-mapper	411470.RUMGNA_02203	NA	NA
UHGV-1966523_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1966523_31	UniRef90	UniRef90_A0A3E2UDC8	RNA polymerase subunit sigma-70	NA
UHGV-1966523_31	eggNOG-mapper	1235792.C808_05360	NA	NA
UHGV-1966523_31	Structural annotation	PF02996	NA	NA
UHGV-1966523_33	PHROG	phrog_2412	NA	unknown function
UHGV-1966523_33	UniRef90	UniRef90_UPI001E414EFE	KGG domain-containing protein	NA
UHGV-1966523_33	eggNOG-mapper	742723.HMPREF9477_00912	NA	NA
UHGV-1966523_34	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1966523_34	PHROG	phrog_10250	NA	unknown function
UHGV-1966523_34	UniRef90	UniRef90_UPI001CD3A8F7	PBSX family phage terminase large subunit	NA
UHGV-1966523_34	eggNOG-mapper	1235799.C818_04217	Phage terminase large subunit	NA
UHGV-1966523_34	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1966523_34	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1966523_34	COG	COG1783	Phage terminase large subunit	NA
UHGV-1966523_34	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1966523_35	PHROG	phrog_533	portal protein	head and packaging
UHGV-1966523_35	UniRef90	UniRef90_UPI00156E2A2F	phage capsid protein	NA
UHGV-1966523_35	eggNOG-mapper	33035.JPJF01000030_gene2289	NA	NA
UHGV-1966523_35	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1966523_36	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1966523_36	UniRef90	UniRef90_UPI000E4FFED9	phage minor capsid protein	NA
UHGV-1966523_36	eggNOG-mapper	742723.HMPREF9477_00909	Phage minor capsid protein 2	NA
UHGV-1966523_36	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1966523_36	COG	COG2369	NA	NA
UHGV-1966523_36	Structural annotation	PF06152	NA	NA
UHGV-1966523_38	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1966523_38	UniRef90	UniRef90_UPI000E47EB84	phage scaffolding protein	NA
UHGV-1966523_38	eggNOG-mapper	1235799.C818_04222	Phage minor structural protein GP20	NA
UHGV-1966523_38	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1966523_38	Structural annotation	PF06810	NA	NA
UHGV-1966523_39	eggNOG-mapper	1235799.C818_04223	NA	NA
UHGV-1966523_39	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1966523_40	PHROG	phrog_10972	tail fiber protein	tail
UHGV-1966523_40	UniRef90	UniRef90_UPI001D05A857	head fiber protein	NA
UHGV-1966523_40	eggNOG-mapper	1232443.BAIA02000078_gene28	domain, Protein	NA
UHGV-1966523_40	Pfam	PF11133	Head fiber protein	Phage_head_fibr
UHGV-1966523_40	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-1966523_41	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1966523_41	eggNOG-mapper	1235799.C818_04224	NA	NA
UHGV-1966523_42	PHROG	phrog_3366	NA	unknown function
UHGV-1966523_42	eggNOG-mapper	742723.HMPREF9477_00903	NA	NA
UHGV-1966523_42	Pfam	PF20536	NA	DUF6751
UHGV-1966523_42	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-1966523_43	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1966523_43	UniRef90	UniRef90_UPI000E48DD75	minor capsid protein	NA
UHGV-1966523_43	eggNOG-mapper	742723.HMPREF9477_00902	Minor capsid protein	NA
UHGV-1966523_43	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1966523_43	Structural annotation	PF11114	NA	NA
UHGV-1966523_44	PHROG	phrog_3266	tail completion	connector
UHGV-1966523_44	UniRef90	UniRef90_UPI001570657D	chloramphenicol resistance protein	NA
UHGV-1966523_44	eggNOG-mapper	742723.HMPREF9477_00901	NA	NA
UHGV-1966523_44	Structural annotation	PF12691	NA	NA
UHGV-1966523_45	PHROG	phrog_3099	NA	unknown function
UHGV-1966523_45	UniRef90	UniRef90_A0A3P6KYP0	Phage capsid family protein	NA
UHGV-1966523_45	eggNOG-mapper	742723.HMPREF9477_00900	NA	NA
UHGV-1966523_45	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1966523_46	PHROG	phrog_4450	NA	unknown function
UHGV-1966523_46	eggNOG-mapper	1280692.AUJL01000004_gene838	NA	NA
UHGV-1966523_46	Pfam	PF20378	NA	DUF6673
UHGV-1966523_46	Structural annotation	PF20378	NA	NA
UHGV-1966523_47	PHROG	phrog_706	NA	unknown function
UHGV-1966523_47	UniRef90	UniRef90_UPI001CD5259B	bacteriophage Gp15 family protein	NA
UHGV-1966523_47	eggNOG-mapper	411460.RUMTOR_02091	COG NOG24969 non supervised orthologous group	NA
UHGV-1966523_47	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1966523_47	Structural annotation	PF06854	NA	NA
UHGV-1966523_48	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-1966523_48	UniRef90	UniRef90_UPI00156EB9E7	Rha family transcriptional regulator	NA
UHGV-1966523_48	eggNOG-mapper	411490.ANACAC_00702	phage regulatory protein, rha family	NA
UHGV-1966523_48	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-1966523_48	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-1966523_48	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-1966523_48	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-1966523_49	PHROG	phrog_29609	NA	unknown function
UHGV-1966523_49	UniRef90	UniRef90_A0A1C5UN80	PBECR2 domain-containing protein	NA
UHGV-1966523_49	eggNOG-mapper	1235792.C808_04677	NA	NA
UHGV-1966523_49	Pfam	PF18810	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2	PBECR2
UHGV-1966523_51	PHROG	phrog_23726	NA	unknown function
UHGV-1966523_51	eggNOG-mapper	1414720.CBYM010000004_gene242	cell wall binding repeat	NA
UHGV-1966523_51	COG	COG2247	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	NA
UHGV-1966523_53	UniRef90	UniRef90_A0A0A8WED4	Ribbon-helix-helix protein, copG family	NA
UHGV-1966523_53	eggNOG-mapper	1235800.C819_00492	NA	NA
UHGV-1966523_54	PHROG	phrog_6329	NA	unknown function
UHGV-1966523_54	UniRef90	UniRef90_A0A3Q9BAR3	Phage infection protein	NA
UHGV-1966523_54	eggNOG-mapper	552525.B5LPL4_9CAUD	NA	NA
UHGV-1966523_55	PHROG	phrog_2011	anti-repressor Ant	transcription regulation
UHGV-1966523_55	UniRef90	UniRef90_A0A416S3X5	Bro-N domain-containing protein	NA
UHGV-1966523_55	eggNOG-mapper	742733.HMPREF9469_01810	AntA/AntB antirepressor	NA
UHGV-1966523_55	COG	COG3617	Prophage antirepressor	NA
UHGV-1966523_55	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-1966523_58	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-1966523_58	UniRef90	UniRef90_UPI00191FD941	phage tail tape measure protein	NA
UHGV-1966523_58	eggNOG-mapper	411460.RUMTOR_02094	Phage-related minor tail protein	NA
UHGV-1966523_58	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1966523_58	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1966523_58	COG	COG4487	NA	NA
UHGV-1966523_58	Structural annotation	PF10145, TIGR01760, NF011901	NA	NA
UHGV-1966523_59	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-1966523_59	UniRef90	UniRef90_UPI001186E767	phage tail family protein	NA
UHGV-1966523_59	eggNOG-mapper	411470.RUMGNA_02229	NA	NA
UHGV-1966523_59	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1966523_59	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1966523_59	COG	COG4722	Phage-related protein YomH	NA
UHGV-1966523_59	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-1966523_60	KOfam	K16617	COL13A; collagen type XIII alpha	NA
UHGV-1966523_60	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-1966523_60	UniRef90	UniRef90_UPI000467D60B	collagen-like protein	NA
UHGV-1966523_60	eggNOG-mapper	411470.RUMGNA_02230	NA	NA
UHGV-1966523_60	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1966523_60	Pfam	PF21470	Minor structural protein 5-like, C-terminal domain	BppU-like_C
UHGV-1966523_60	Structural annotation	PF14594, PF08931, PF19081, TIGR01665, COG4926	NA	NA
UHGV-1966523_61	PHROG	phrog_199	holin	lysis
UHGV-1966523_61	UniRef90	UniRef90_A0A2N5P5I5	Holin	NA
UHGV-1966523_61	eggNOG-mapper	1469948.JPNB01000001_gene536	TIGRFAM toxin secretion phage lysis holin	NA
UHGV-1966523_61	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1966523_61	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1966523_61	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1966523_61	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1966523_62	PHROG	phrog_918	NA	unknown function
UHGV-1966523_62	UniRef90	UniRef90_UPI001CF89D06	NA	NA
UHGV-1966523_62	eggNOG-mapper	1140001.I571_01827	NA	NA
UHGV-1966523_62	Pfam	PF19791	NA	DUF6275
UHGV-1966523_62	Structural annotation	PF19791	NA	NA