UHGV-1967298

Genome information

vOTU vOTU-020317

Genome length 34,054 bps

CDS count 55

Completeness 87.98% (medium-quality)

geNomad score 0.9682

Prediction confidence Confident

Genome information
Genome ID	UHGV-1967298
vOTU ID	vOTU-020317
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300014950\|Ga0169861_100247\|provirus_28315_62368
BioSample	SAMEA2580273
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.98% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	34
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9682
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	84.66
Jumbo phage	No

Genome content
Genome length	34,054 bps
GC content	35.27%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	93.85%
Average CDS length	584.46 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1967298_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1967298_1	PHROG	phrog_95	integrase	integration and excision
UHGV-1967298_1	UniRef90	UniRef90_A0A0V8EML0	Phage integrase (Site-specific recombinase)	NA
UHGV-1967298_1	eggNOG-mapper	444474.A5GZ62_9CAUD	Recombinase	NA
UHGV-1967298_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1967298_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-1967298_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1967298_1	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-1967298_2	PHROG	phrog_7115	NA	unknown function
UHGV-1967298_2	UniRef90	UniRef90_A5GZ63	bPH_1 domain-containing protein	NA
UHGV-1967298_2	eggNOG-mapper	585204.SMSK597_1826	Bacterial PH domain	NA
UHGV-1967298_2	Pfam	PF08000	Bacterial PH domain	bPH_1
UHGV-1967298_3	PHROG	phrog_87	metallo-protease	other
UHGV-1967298_3	UniRef90	UniRef90_A0A0V8CLT9	NA	NA
UHGV-1967298_3	eggNOG-mapper	272623.L104895	NA	NA
UHGV-1967298_4	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-1967298_4	UniRef90	UniRef90_A0A1P8BKQ2	Immunity repressor Cl	NA
UHGV-1967298_4	eggNOG-mapper	1215915.BN193_02040	Helix-turn-helix XRE-family like proteins	NA
UHGV-1967298_4	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1967298_4	Pfam	PF06543	Lactococcus bacteriophage repressor	Lac_bphage_repr
UHGV-1967298_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1967298_4	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1967298_5	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1967298_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1967298_5	UniRef90	UniRef90_UPI00071D047A	helix-turn-helix domain-containing protein	NA
UHGV-1967298_5	eggNOG-mapper	201846.B5SP03_9CAUD	sequence-specific DNA binding	NA
UHGV-1967298_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1967298_5	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1967298_6	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1967298_6	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-1967298_6	UniRef90	UniRef90_UPI00071C80C4	phage antirepressor KilAC domain-containing protein	NA
UHGV-1967298_6	eggNOG-mapper	1314.HKU360_00753	AntA/AntB antirepressor	NA
UHGV-1967298_6	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-1967298_6	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1967298_6	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-1967298_6	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-1967298_7	PHROG	phrog_12961	excisionase	integration and excision
UHGV-1967298_7	UniRef90	UniRef90_A0A0V8ENZ2	Excisionase experimental	NA
UHGV-1967298_8	PHROG	phrog_5998	NA	unknown function
UHGV-1967298_9	PHROG	phrog_17510	NA	unknown function
UHGV-1967298_9	UniRef90	UniRef90_A0A166U0Q4	NA	NA
UHGV-1967298_10	PHROG	phrog_252	Bet-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1967298_10	UniRef90	UniRef90_A0A0B8QJV2	Phage recombination protein Beta	NA
UHGV-1967298_10	eggNOG-mapper	374526.A5GYR1_9CAUD	DNA metabolic process	NA
UHGV-1967298_10	Pfam	PF03837	RecT family	RecT
UHGV-1967298_10	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-1967298_10	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-1967298_11	PHROG	phrog_674	NA	unknown function
UHGV-1967298_11	UniRef90	UniRef90_A0A0V8DX54	NA	NA
UHGV-1967298_11	eggNOG-mapper	374526.A5GYR2_9CAUD	NA	NA
UHGV-1967298_11	Pfam	PF07083	NA	DUF1351
UHGV-1967298_11	Structural annotation	PF07083	NA	NA
UHGV-1967298_12	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-1967298_12	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-1967298_12	UniRef90	UniRef90_UPI001A927D4D	phage replisome organizer N-terminal domain-containing protein	NA
UHGV-1967298_12	eggNOG-mapper	1214184.ALKY01000039_gene945	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-1967298_12	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-1967298_12	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-1967298_12	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-1967298_12	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1967298_12	Structural annotation	PF09681, TIGR01714, COG0640	NA	NA
UHGV-1967298_13	PHROG	phrog_23225	NA	unknown function
UHGV-1967298_13	UniRef90	UniRef90_A0A0V8DX07	NA	NA
UHGV-1967298_14	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1967298_14	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1967298_14	UniRef90	UniRef90_A0A199YQY6	Endodeoxyribonuclease RusA family protein	NA
UHGV-1967298_14	eggNOG-mapper	1035189.HMPREF9954_0297	holliday junction resolvase	NA
UHGV-1967298_14	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1967298_14	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1967298_14	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1967298_15	PHROG	phrog_1415	NA	unknown function
UHGV-1967298_15	UniRef90	UniRef90_A0A084AAA1	Putative phage related protein	NA
UHGV-1967298_16	PHROG	phrog_5105	NA	unknown function
UHGV-1967298_17	PHROG	phrog_5105	NA	unknown function
UHGV-1967298_18	PHROG	phrog_26088	NA	unknown function
UHGV-1967298_19	PHROG	phrog_7240	NA	unknown function
UHGV-1967298_19	UniRef90	UniRef90_A0A7T3CDN9	NA	NA
UHGV-1967298_19	Pfam	PF06563	NA	DUF1125
UHGV-1967298_20	PHROG	phrog_121	NA	unknown function
UHGV-1967298_20	UniRef90	UniRef90_UPI001C1F98D4	NA	NA
UHGV-1967298_20	eggNOG-mapper	272623.L43612	NA	NA
UHGV-1967298_20	Pfam	PF07852	NA	DUF1642
UHGV-1967298_20	Structural annotation	PF07852	NA	NA
UHGV-1967298_21	PHROG	phrog_17274	NA	unknown function
UHGV-1967298_21	UniRef90	UniRef90_A0A0V8EBY3	NA	NA
UHGV-1967298_22	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-1967298_22	UniRef90	UniRef90_UPI000CE37CB1	NA	NA
UHGV-1967298_22	eggNOG-mapper	1234679.BN424_2153	NA	NA
UHGV-1967298_22	Pfam	PF12961	NA	DUF3850
UHGV-1967298_24	PHROG	phrog_10825	NA	unknown function
UHGV-1967298_24	UniRef90	UniRef90_A0A649V1B0	Mismatch repair ATPase	NA
UHGV-1967298_24	eggNOG-mapper	201846.B5SP09_9CAUD	NA	NA
UHGV-1967298_25	PHROG	phrog_4000	NA	unknown function
UHGV-1967298_25	UniRef90	UniRef90_D2BK69	NA	NA
UHGV-1967298_27	PHROG	phrog_7574	NA	unknown function
UHGV-1967298_27	UniRef90	UniRef90_A0A1W6JKT3	Glycosyltransferase	NA
UHGV-1967298_28	PHROG	phrog_2882	DNA methyltransferase	other
UHGV-1967298_28	UniRef90	UniRef90_A0A0V8E6V9	Putative C5 methylase (MAV1virus-like)	NA
UHGV-1967298_28	eggNOG-mapper	565653.EGBG_01954	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-1967298_28	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1967298_28	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1967298_28	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-1967298_29	PHROG	phrog_2670	NA	unknown function
UHGV-1967298_29	UniRef90	UniRef90_A0A7T3CDC1	NA	NA
UHGV-1967298_29	Pfam	PF07874	NA	DUF1660
UHGV-1967298_29	Structural annotation	NF041603	NA	NA
UHGV-1967298_30	PHROG	phrog_19098	NA	unknown function
UHGV-1967298_30	UniRef90	UniRef90_A0A0M2ZR12	ATP synthase F0, A subunit, atpB	NA
UHGV-1967298_32	UniRef90	UniRef90_D2BK63	NA	NA
UHGV-1967298_33	PHROG	phrog_2198	Alt-like transcription activator	transcription regulation
UHGV-1967298_33	UniRef90	UniRef90_UPI001CE2CF4D	RinA family protein	NA
UHGV-1967298_33	eggNOG-mapper	1229517.AMFD01000023_gene1326	EVIDENCE BY HOMOLOGY BIO14.03 Phage related functions and prophages	NA
UHGV-1967298_33	Pfam	PF05263	NA	DUF722
UHGV-1967298_33	Structural annotation	PF05263, MF_00674, TIGR01636, COG1595	NA	NA
UHGV-1967298_34	PHROG	phrog_3281	endonuclease VII	DNA, RNA and nucleotide metabolism
UHGV-1967298_34	UniRef90	UniRef90_UPI000BF9E143	Rho termination factor N-terminal domain-containing protein	NA
UHGV-1967298_35	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1967298_35	UniRef90	UniRef90_A0A0M2ZSF5	HNH endonuclease domain protein	NA
UHGV-1967298_35	eggNOG-mapper	226185.EF_2825	HNH endonuclease	NA
UHGV-1967298_35	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1967298_35	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1967298_35	Structural annotation	PF05766	NA	NA
UHGV-1967298_36	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-1967298_36	UniRef90	UniRef90_A0A0M2ZSD1	Phage terminase, small subunit, P27 family TC 45 60 45 60	NA
UHGV-1967298_36	eggNOG-mapper	565664.EFXG_02663	NA	NA
UHGV-1967298_36	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1967298_37	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1967298_37	UniRef90	UniRef90_A0A1E7G7J5	Terminase	NA
UHGV-1967298_37	eggNOG-mapper	565664.EFXG_02662	Phage Terminase	NA
UHGV-1967298_37	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1967298_37	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1967298_37	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1967298_37	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1967298_38	PHROG	phrog_12	portal protein	head and packaging
UHGV-1967298_38	UniRef90	UniRef90_A0A0M2ZW19	Phage portal protein, HK97 family	NA
UHGV-1967298_38	eggNOG-mapper	1145276.T479_01620	Phage portal protein	NA
UHGV-1967298_38	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1967298_38	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1967298_38	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1967298_39	KOfam	K06904	NA	NA
UHGV-1967298_39	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1967298_39	UniRef90	UniRef90_A0A0M2ZTG1	Phage prohead protease, HK97 family	NA
UHGV-1967298_39	eggNOG-mapper	1145276.T479_01625	Caudovirus prohead serine protease	NA
UHGV-1967298_39	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1967298_39	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1967298_39	COG	COG3740	Phage head maturation protease	NA
UHGV-1967298_39	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1967298_40	PHROG	phrog_10	major head protein	head and packaging
UHGV-1967298_40	UniRef90	UniRef90_A0A5D4GB69	Phage major capsid protein	NA
UHGV-1967298_40	eggNOG-mapper	226185.EF_2820	Phage capsid family	NA
UHGV-1967298_40	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1967298_40	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1967298_40	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1967298_40	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1967298_41	PHROG	phrog_7440	major tail protein	tail
UHGV-1967298_41	UniRef90	UniRef90_A0A7T3CDC8	Fibronectin type III domain-containing protein	NA
UHGV-1967298_41	eggNOG-mapper	1231377.C426_2218	NA	NA
UHGV-1967298_41	Structural annotation	PF21605	NA	NA
UHGV-1967298_42	PHROG	phrog_4609	NA	unknown function
UHGV-1967298_42	UniRef90	UniRef90_A0A0M2ZSC6	Putative phage protein (Putative DNA packaging)	NA
UHGV-1967298_42	eggNOG-mapper	1158604.I591_00530	Phage gp6-like head-tail connector protein	NA
UHGV-1967298_42	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1967298_42	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1967298_43	PHROG	phrog_4014	head-tail adaptor	connector
UHGV-1967298_43	UniRef90	UniRef90_A0A0M2ZW14	Phage head-tail adaptor	NA
UHGV-1967298_43	eggNOG-mapper	1158614.I592_02331	Phage head-tail joining protein	NA
UHGV-1967298_43	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1967298_43	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1967298_43	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1967298_44	UniRef90	UniRef90_A0A0M2A8L3	NA	NA
UHGV-1967298_44	eggNOG-mapper	226185.EF_2817	NA	NA
UHGV-1967298_44	Structural annotation	PF20765	NA	NA
UHGV-1967298_45	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1967298_45	UniRef90	UniRef90_A0A0M2ZX90	Phage protein, HK97 gp10 family	NA
UHGV-1967298_45	eggNOG-mapper	565664.EFXG_02655	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1967298_45	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1967298_45	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1967298_45	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-1967298_46	PHROG	phrog_11502	tail protein	tail
UHGV-1967298_46	UniRef90	UniRef90_A0A0M2ZSE7	Phage major tail protein, phi13 family	NA
UHGV-1967298_46	eggNOG-mapper	226185.EF_2815	NA	NA
UHGV-1967298_46	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1967298_46	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1967298_47	PHROG	phrog_4888	tail assembly chaperone	tail
UHGV-1967298_47	eggNOG-mapper	1158614.I592_02327	NA	NA
UHGV-1967298_47	Structural annotation	PF11836	NA	NA
UHGV-1967298_48	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-1967298_48	UniRef90	UniRef90_A0A0M2ZW10	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-1967298_48	eggNOG-mapper	565653.EGBG_02364	Phage-related minor tail protein	NA
UHGV-1967298_48	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1967298_48	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1967298_48	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1967298_48	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1967298_49	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1967298_49	UniRef90	UniRef90_UPI001BAFEAD6	phage tail family protein	NA
UHGV-1967298_49	eggNOG-mapper	1201292.DR75_1630	phage tail	NA
UHGV-1967298_49	COG	COG4722	Phage-related protein YomH	NA
UHGV-1967298_49	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1967298_50	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-1967298_50	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1967298_50	UniRef90	UniRef90_A0A0M2ZX85	Phage minor structural protein, N-terminal region	NA
UHGV-1967298_50	eggNOG-mapper	272623.L63739	Phage minor structural protein	NA
UHGV-1967298_50	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1967298_50	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-1967298_50	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-1967298_50	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1967298_50	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-1967298_50	Structural annotation	PF14594, PF01551, PF18013, TIGR01665, NF040883, COG4926, COG0739	NA	NA
UHGV-1967298_51	PHROG	phrog_8913	minor head protein	head and packaging
UHGV-1967298_51	UniRef90	UniRef90_A6MAD2	Gp067	NA
UHGV-1967298_51	eggNOG-mapper	388452.A6MAD2_9CAUD	NA	NA
UHGV-1967298_51	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-1967298_51	Pfam	PF18667	Baseplate upper protein immunoglobulin like domain	BppU_IgG
UHGV-1967298_51	Structural annotation	PF10651, PF18667, NF040788, COG5513	NA	NA
UHGV-1967298_52	PHROG	phrog_7911	tail protein	tail
UHGV-1967298_52	UniRef90	UniRef90_A6MAD1	Gp066	NA
UHGV-1967298_52	eggNOG-mapper	388452.A6MAD1_9CAUD	NA	NA
UHGV-1967298_52	Pfam	PF18338	Lower baseplate protein N-terminal domain	BppL_N
UHGV-1967298_53	PHROG	phrog_1379	NA	unknown function
UHGV-1967298_53	UniRef90	UniRef90_A0A0B8QX14	FOG: TPR repeat	NA
UHGV-1967298_53	eggNOG-mapper	63118.O80121_9CAUD	NA	NA
UHGV-1967298_54	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1967298_54	PHROG	phrog_291	endolysin	lysis
UHGV-1967298_54	UniRef90	UniRef90_A0A2X0R3D5	N-acetylmuramoyl-L-alanine amidase sle1	NA
UHGV-1967298_54	eggNOG-mapper	114416.Q8LTP4_9CAUD	peptidoglycan catabolic process	NA
UHGV-1967298_54	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1967298_54	Pfam	PF01476	LysM domain	LysM
UHGV-1967298_54	Structural annotation	PF01476, PF18697, TIGR02899, COG3757, COG1388	NA	NA