UHGV-1967457

Genome information

vOTU vOTU-019392

Genome length 28,165 bps

CDS count 28

Completeness 62.43% (medium-quality)

geNomad score 0.9397

Prediction confidence Confident

Genome information
Genome ID	UHGV-1967457
vOTU ID	vOTU-019392
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300014938\|Ga0134444_100148\|provirus_237_28401
BioSample	SAMN03922524
Country	Germany
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.43% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9397
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.95
Jumbo phage	No

Genome content
Genome length	28,165 bps
GC content	61.42%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	28
CDS density	95.43%
Average CDS length	960.86 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1967457_1	KOfam	K19092	parE1_3_4; toxin ParE1/3/4	NA
UHGV-1967457_1	PHROG	phrog_2455	NA	unknown function
UHGV-1967457_1	UniRef90	UniRef90_A0A1G4WWM4	ParE toxin of type II toxin-antitoxin system, parDE	NA
UHGV-1967457_1	eggNOG-mapper	335541.Swol_1971	ParE toxin of type II toxin-antitoxin system, parDE	NA
UHGV-1967457_1	Pfam	PF05016	ParE toxin of type II toxin-antitoxin system, parDE	ParE_toxin
UHGV-1967457_1	COG	COG3668	Plasmid stabilization system protein ParE	NA
UHGV-1967457_1	Structural annotation	PF05016, TIGR00053, COG3668	NA	NA
UHGV-1967457_2	UniRef90	UniRef90_A0A354WRR3	Type II toxin-antitoxin system Phd/YefM family antitoxin	NA
UHGV-1967457_2	eggNOG-mapper	1298920.KI911353_gene5321	Antitoxin component of a toxin-antitoxin (TA) module	NA
UHGV-1967457_2	Pfam	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system	PhdYeFM_antitox
UHGV-1967457_2	COG	COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	NA
UHGV-1967457_2	Structural annotation	PF02604, TIGR01552, COG2161	NA	NA
UHGV-1967457_3	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-1967457_3	PHROG	phrog_498	DNA methyltransferase	other
UHGV-1967457_3	UniRef90	UniRef90_W0FHI1	Methyltransferase	NA
UHGV-1967457_3	eggNOG-mapper	994573.T472_0214020	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-1967457_3	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1967457_3	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1967457_3	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1967457_3	COG	COG0863	DNA modification methylase	NA
UHGV-1967457_3	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-1967457_4	COG	COG4219	Signal transducer regulating beta-lactamase production, contains metallopeptidase domain	NA
UHGV-1967457_5	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-1967457_5	UniRef90	UniRef90_A0A1Q6PU38	Terminase	NA
UHGV-1967457_5	eggNOG-mapper	1209989.TepiRe1_2607	Phage terminase, small subunit	NA
UHGV-1967457_5	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1967457_5	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-1967457_5	COG	COG3747	Phage terminase, small subunit	NA
UHGV-1967457_5	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1967457_6	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1967457_6	UniRef90	UniRef90_A0A1Q6PTP4	Terminase	NA
UHGV-1967457_6	eggNOG-mapper	1408324.JNJK01000006_gene1378	Phage Terminase	NA
UHGV-1967457_6	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1967457_6	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1967457_6	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1967457_6	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1967457_7	PHROG	phrog_2323	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1967457_7	UniRef90	UniRef90_E7GJY4	Phage endonuclease	NA
UHGV-1967457_7	eggNOG-mapper	742740.HMPREF9474_01229	HNH endonuclease	NA
UHGV-1967457_7	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1967457_7	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1967457_7	Structural annotation	PF01844, COG1403	NA	NA
UHGV-1967457_8	UniRef90	UniRef90_A0A1Y3YFV9	GIY-YIG domain-containing protein	NA
UHGV-1967457_8	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-1967457_8	COG	COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	NA
UHGV-1967457_9	PHROG	phrog_12	portal protein	head and packaging
UHGV-1967457_9	UniRef90	UniRef90_A0A1Q6PTQ2	Phage portal protein	NA
UHGV-1967457_9	eggNOG-mapper	1121289.JHVL01000007_gene2755	Phage portal protein, HK97 family	NA
UHGV-1967457_9	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1967457_9	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1967457_9	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1967457_9	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1967457_10	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1967457_10	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1967457_10	UniRef90	UniRef90_A0A2V2FK72	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1967457_10	eggNOG-mapper	1123250.KB908423_gene716	Belongs to the peptidase S14 family	NA
UHGV-1967457_10	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1967457_10	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1967457_10	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-1967457_11	PHROG	phrog_10	major head protein	head and packaging
UHGV-1967457_11	UniRef90	UniRef90_A0A2V2FGW4	Phage major capsid protein	NA
UHGV-1967457_11	eggNOG-mapper	696281.Desru_3549	TIGRFAM phage major capsid protein, HK97 family	NA
UHGV-1967457_11	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1967457_11	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1967457_11	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1967457_11	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1967457_12	PHROG	phrog_12102	NA	unknown function
UHGV-1967457_12	UniRef90	UniRef90_A0A7X7FI45	Head fiber protein	NA
UHGV-1967457_13	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-1967457_13	UniRef90	UniRef90_A0A7X7FKE4	Phage gp6-like head-tail connector protein	NA
UHGV-1967457_13	eggNOG-mapper	1121116.KB894776_gene1858	Phage gp6-like head-tail connector protein	NA
UHGV-1967457_13	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1967457_13	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1967457_13	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1967457_14	PHROG	phrog_25	head closure Hc1	connector
UHGV-1967457_14	UniRef90	UniRef90_A0A7X7FI16	Phage head closure protein	NA
UHGV-1967457_14	eggNOG-mapper	1027292.HMPREF9372_1256	Phage head-tail adaptor	NA
UHGV-1967457_14	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1967457_14	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1967457_14	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1967457_14	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1967457_15	Structural annotation	PF05657	NA	NA
UHGV-1967457_16	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1967457_16	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1967457_16	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1967457_16	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-1967457_17	PHROG	phrog_88	major tail protein	tail
UHGV-1967457_17	UniRef90	UniRef90_A0A7C6BMC6	Phage tail protein	NA
UHGV-1967457_17	eggNOG-mapper	1382315.JPOI01000001_gene276	Phage major tail protein phi13	NA
UHGV-1967457_17	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1967457_17	COG	COG5276	NA	NA
UHGV-1967457_17	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1967457_20	KOfam	K19092	parE1_3_4; toxin ParE1/3/4	NA
UHGV-1967457_20	PHROG	phrog_2455	NA	unknown function
UHGV-1967457_20	UniRef90	UniRef90_A0A7C6FVQ7	Type II toxin-antitoxin system RelE/ParE family toxin	NA
UHGV-1967457_20	eggNOG-mapper	1449126.JQKL01000052_gene3065	addiction module toxin, RelE StbE family	NA
UHGV-1967457_20	Pfam	PF05016	ParE toxin of type II toxin-antitoxin system, parDE	ParE_toxin
UHGV-1967457_20	NCBIFam	TIGR02385.1	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	NA
UHGV-1967457_20	COG	COG3668	Plasmid stabilization system protein ParE	NA
UHGV-1967457_20	Structural annotation	PF05016, TIGR00053, COG3668	NA	NA
UHGV-1967457_21	KOfam	K19165	phd; antitoxin Phd	NA
UHGV-1967457_21	PHROG	phrog_2268	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-1967457_21	UniRef90	UniRef90_A0A7C6FS16	Antitoxin	NA
UHGV-1967457_21	eggNOG-mapper	580327.Tthe_0822	Antitoxin component of a toxin-antitoxin (TA) module	NA
UHGV-1967457_21	Pfam	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system	PhdYeFM_antitox
UHGV-1967457_21	NCBIFam	TIGR01552.1	type II toxin-antitoxin system prevent-host-death family antitoxin	NA
UHGV-1967457_21	COG	COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	NA
UHGV-1967457_21	Structural annotation	PF02604, TIGR01552, COG2161	NA	NA
UHGV-1967457_22	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-1967457_22	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-1967457_22	UniRef90	UniRef90_A0A1Q6PTR6	Phage tail tape measure protein	NA
UHGV-1967457_22	eggNOG-mapper	1289596.M1PKM6_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-1967457_22	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1967457_22	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1967457_22	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-1967457_23	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1967457_23	UniRef90	UniRef90_A0A7C6FS63	Phage tail protein	NA
UHGV-1967457_23	eggNOG-mapper	1540257.JQMW01000004_gene407	tail component	NA
UHGV-1967457_23	COG	COG4722	Phage-related protein YomH	NA
UHGV-1967457_23	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1967457_24	KOfam	K07473	dinJ; DNA-damage-inducible protein J	NA
UHGV-1967457_24	PHROG	phrog_2737	NA	unknown function
UHGV-1967457_24	UniRef90	UniRef90_UPI0006C5AC41	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA
UHGV-1967457_24	eggNOG-mapper	1499680.CCFE01000027_gene3360	RelB antitoxin	NA
UHGV-1967457_24	Pfam	PF04221	RelB antitoxin	RelB
UHGV-1967457_24	NCBIFam	TIGR02384.1	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA
UHGV-1967457_24	COG	COG3077	Antitoxin component of the RelBE or YafQ-DinJ toxin-antitoxin module	NA
UHGV-1967457_24	Structural annotation	PF04221, TIGR02384, COG3077	NA	NA
UHGV-1967457_25	PHROG	phrog_32804	NA	unknown function
UHGV-1967457_25	UniRef90	UniRef90_A0A3D4QB94	NA	NA
UHGV-1967457_25	eggNOG-mapper	887325.HMPREF0381_2362	NA	NA
UHGV-1967457_25	PADLOC	darT	NA	NA
UHGV-1967457_25	Pfam	PF14487	ssDNA thymidine ADP-ribosyltransferase, DarT	DarT
UHGV-1967457_25	Structural annotation	PF14487	NA	NA
UHGV-1967457_26	KOfam	K09388	NA	NA
UHGV-1967457_26	PHROG	phrog_335	phosphatase	other
UHGV-1967457_26	UniRef90	UniRef90_A0A3D4QBY5	Appr-1-p processing protein	NA
UHGV-1967457_26	eggNOG-mapper	641112.ACOK01000083_gene3282	Macro domain	NA
UHGV-1967457_26	PADLOC	darG	NA	NA
UHGV-1967457_26	Pfam	PF01661	Macro domain	Macro
UHGV-1967457_26	COG	COG3465	NA	NA
UHGV-1967457_26	Structural annotation	PF20016, MF_01205, NF001666, COG2110, COG3465	NA	NA
UHGV-1967457_27	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1967457_27	UniRef90	UniRef90_A0A7C6FP44	SH3 domain-containing protein	NA
UHGV-1967457_27	eggNOG-mapper	386415.NT01CX_2159	Phage minor structural protein	NA
UHGV-1967457_27	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-1967457_27	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1967457_27	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1967457_27	COG	COG4926	Phage-related protein	NA
UHGV-1967457_28	KOfam	K15342	cas1; CRISP-associated protein Cas1	NA
UHGV-1967457_28	UniRef90	UniRef90_A0A6L5YDZ5	CRISPR-associated endonuclease Cas1	NA
UHGV-1967457_28	eggNOG-mapper	292459.STH663	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette	NA
UHGV-1967457_28	PADLOC	Cas1e_WP_035839043.1	NA	CRISPR-CAS
UHGV-1967457_28	Pfam	PF01867	CRISPR associated protein Cas1	Cas_Cas1
UHGV-1967457_28	NCBIFam	TIGR03638.1	type I-E CRISPR-associated endonuclease Cas1e	NA
UHGV-1967457_28	COG	COG1518	CRISPR-Cas system-associated integrase Cas1	NA
UHGV-1967457_28	HAMAP	MF_01470	CRISPR-associated endonuclease Cas1 [cas1]	NA