UHGV-1968322

Genome information

Genome length 37,552 bps

CDS count 63

Completeness 99.16% (high-quality)

geNomad score 0.9477

Prediction confidence Confident

Genome information
Genome ID	UHGV-1968322
vOTU ID	vOTU-010211
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300014565\|Ga0169881_100106\|provirus_66505_104056
BioSample	SAMEA2580293
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.16% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9477
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.06
Jumbo phage	No

Genome content
Genome length	37,552 bps
GC content	34.04%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	93.30%
Average CDS length	561.43 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1968322_1	KOfam	K14059	int; integrase	NA
UHGV-1968322_1	PHROG	phrog_1	integrase	integration and excision
UHGV-1968322_1	UniRef90	UniRef90_UPI000E4CB1B1	site-specific integrase	NA
UHGV-1968322_1	eggNOG-mapper	1232446.BAIE02000011_gene1633	Site-specific recombinase, phage integrase family	NA
UHGV-1968322_1	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-1968322_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1968322_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1968322_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1968322_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1968322_2	UniRef90	UniRef90_A0A328UBY0	Cell filamentation protein Fic	NA
UHGV-1968322_2	eggNOG-mapper	397291.C804_06304	Virulence protein RhuM family	NA
UHGV-1968322_2	Pfam	PF13310	Virulence protein RhuM family	Virulence_RhuM
UHGV-1968322_2	COG	COG3943	NA	NA
UHGV-1968322_2	Structural annotation	PF13310, TIGR02681, COG3943	NA	NA
UHGV-1968322_3	eggNOG-mapper	755731.Clo1100_1139	NA	NA
UHGV-1968322_4	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-1968322_4	PHROG	phrog_3989	NA	unknown function
UHGV-1968322_4	UniRef90	UniRef90_A0A6N4TGE7	BRCT domain-containing protein	NA
UHGV-1968322_4	eggNOG-mapper	44251.PDUR_08265	DNA polymerase III subunit epsilon	NA
UHGV-1968322_4	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-1968322_4	Pfam	PF00929	Exonuclease	RNase_T
UHGV-1968322_4	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-1968322_4	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-1968322_4	Structural annotation	PF00929, PF08797, PF00533, MF_00157, NF004844, COG0847	NA	NA
UHGV-1968322_5	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1968322_5	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1968322_5	UniRef90	UniRef90_UPI001D076F33	XRE family transcriptional regulator	NA
UHGV-1968322_5	eggNOG-mapper	1111454.HMPREF1250_0782	Helix-turn-helix XRE-family like proteins	NA
UHGV-1968322_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1968322_5	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1968322_5	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1968322_5	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-1968322_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1968322_6	UniRef90	UniRef90_A0A1Y4R5Z0	HTH cro/C1-type domain-containing protein	NA
UHGV-1968322_6	eggNOG-mapper	938278.CAJO01000051_gene818	DNA-binding helix-turn-helix protein	NA
UHGV-1968322_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1968322_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1968322_6	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1968322_7	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-1968322_7	UniRef90	UniRef90_UPI001D093EF2	ORF6C domain-containing protein	NA
UHGV-1968322_7	eggNOG-mapper	1232446.BAIE02000011_gene1630	ORF6C domain	NA
UHGV-1968322_7	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-1968322_7	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-1968322_7	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-1968322_7	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-1968322_12	UniRef90	UniRef90_UPI000E4FA7A6	site-specific DNA-methyltransferase	NA
UHGV-1968322_12	eggNOG-mapper	457405.FSDG_01570	DNA methylase	NA
UHGV-1968322_12	COG	COG0863	DNA modification methylase	NA
UHGV-1968322_12	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-1968322_14	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1968322_14	UniRef90	UniRef90_G9R0Z0	HNHc domain-containing protein	NA
UHGV-1968322_14	eggNOG-mapper	360911.EAT1b_0007	NUMOD4 motif	NA
UHGV-1968322_14	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1968322_14	Structural annotation	PF13392, PF07453	NA	NA
UHGV-1968322_17	PHROG	phrog_3634	NA	unknown function
UHGV-1968322_17	UniRef90	UniRef90_A0A3E3AEX0	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-1968322_17	eggNOG-mapper	1232446.BAIE02000002_gene804	nucleoside 2-deoxyribosyltransferase	NA
UHGV-1968322_17	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-1968322_17	Structural annotation	PF13676, MF_03036, TIGR03646, COG4916	NA	NA
UHGV-1968322_18	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1968322_18	PHROG	phrog_1	integrase	integration and excision
UHGV-1968322_18	UniRef90	UniRef90_UPI000E547716	tyrosine-type recombinase/integrase	NA
UHGV-1968322_18	eggNOG-mapper	1232449.BAHV02000016_gene1840	Phage integrase, N-terminal SAM-like domain	NA
UHGV-1968322_18	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-1968322_18	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1968322_18	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1968322_18	Structural annotation	PF00589, PF13495, MF_02055, NF040815, COG4974	NA	NA
UHGV-1968322_20	eggNOG-mapper	1232446.BAIE02000011_gene1618	NA	NA
UHGV-1968322_23	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1968322_23	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1968322_23	UniRef90	UniRef90_UPI001D07CE99	HNH endonuclease	NA
UHGV-1968322_23	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-1968322_23	Pfam	PF14279	HNH endonuclease	HNH_5
UHGV-1968322_23	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1968322_23	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-1968322_24	PHROG	phrog_625	NA	unknown function
UHGV-1968322_24	UniRef90	UniRef90_A0A3E3EHP8	ASCH domain-containing protein	NA
UHGV-1968322_24	eggNOG-mapper	1227266.HMPREF1551_00545	NA	NA
UHGV-1968322_24	Structural annotation	PF12961, NF002008, COG2028	NA	NA
UHGV-1968322_26	UniRef90	UniRef90_UPI001ADDDCFE	CopG family transcriptional regulator	NA
UHGV-1968322_26	eggNOG-mapper	1235800.C819_00492	NA	NA
UHGV-1968322_26	Structural annotation	PF01402, NF041793, COG3905	NA	NA
UHGV-1968322_28	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-1968322_28	UniRef90	UniRef90_A0A3A9AW20	Phage_rep_org_N domain-containing protein	NA
UHGV-1968322_28	eggNOG-mapper	1111134.HMPREF1253_0491	Phage replisome organizer N-terminal domain protein	NA
UHGV-1968322_28	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-1968322_28	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-1968322_28	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-1968322_29	PHROG	phrog_2289	helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1968322_29	UniRef90	UniRef90_UPI001BAD89C6	replicative helicase loader/inhibitor	NA
UHGV-1968322_30	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1968322_30	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1968322_30	UniRef90	UniRef90_UPI001BA4C082	AAA family ATPase	NA
UHGV-1968322_30	eggNOG-mapper	1232446.BAIE02000002_gene817	Participates in initiation and elongation during chromosome replication	NA
UHGV-1968322_30	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1968322_30	COG	COG0305	Replicative DNA helicase	NA
UHGV-1968322_30	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1968322_32	UniRef90	UniRef90_G9R105	HIPIP domain-containing protein	NA
UHGV-1968322_32	Pfam	PF01355	High potential iron-sulfur protein	HIPIP
UHGV-1968322_33	PHROG	phrog_1828	NA	unknown function
UHGV-1968322_33	eggNOG-mapper	1450694.BTS2_0549	NA	NA
UHGV-1968322_35	Structural annotation	PF04545, PF01920, TIGR01636	NA	NA
UHGV-1968322_36	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1968322_36	UniRef90	UniRef90_A0A3E3EGW1	HNH endonuclease	NA
UHGV-1968322_36	eggNOG-mapper	926561.KB900623_gene763	HNH nucleases	NA
UHGV-1968322_36	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1968322_36	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1968322_38	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-1968322_38	UniRef90	UniRef90_A0A3E3EG90	RNA polymerase subunit sigma-70	NA
UHGV-1968322_38	eggNOG-mapper	864178.E2ELI1_9CAUD	Phage terminase, small subunit	NA
UHGV-1968322_38	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1968322_38	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1968322_39	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1968322_39	UniRef90	UniRef90_A0A3E3EH16	Terminase	NA
UHGV-1968322_39	eggNOG-mapper	610130.Closa_0741	Phage Terminase	NA
UHGV-1968322_39	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1968322_39	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1968322_39	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1968322_39	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1968322_40	PHROG	phrog_12	portal protein	head and packaging
UHGV-1968322_40	UniRef90	UniRef90_A0A3E3EI59	Phage portal protein	NA
UHGV-1968322_40	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-1968322_40	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1968322_40	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1968322_40	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1968322_40	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1968322_41	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1968322_41	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1968322_41	UniRef90	UniRef90_A0A3E3EG77	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1968322_41	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-1968322_41	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1968322_41	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1968322_41	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-1968322_42	PHROG	phrog_10	major head protein	head and packaging
UHGV-1968322_42	UniRef90	UniRef90_A0A3E3EGM4	Phage major capsid protein	NA
UHGV-1968322_42	eggNOG-mapper	349161.Dred_2604	Phage capsid family	NA
UHGV-1968322_42	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1968322_42	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1968322_42	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1968322_42	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1968322_43	PHROG	phrog_749	NA	unknown function
UHGV-1968322_43	eggNOG-mapper	1415774.U728_1251	NA	NA
UHGV-1968322_44	eggNOG-mapper	1235792.C808_00088	NA	NA
UHGV-1968322_44	Structural annotation	PF16467, MF_01457, TIGR01563, COG5614	NA	NA
UHGV-1968322_45	PHROG	phrog_78	tail terminator	connector
UHGV-1968322_45	UniRef90	UniRef90_A0A0Z8IUE1	Prophage pi2 protein 38	NA
UHGV-1968322_45	eggNOG-mapper	1235802.C823_05272	NA	NA
UHGV-1968322_45	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-1968322_46	UniRef90	UniRef90_A0A374RUJ8	HK97 gp10 family phage protein	NA
UHGV-1968322_46	eggNOG-mapper	86416.Clopa_0344	NA	NA
UHGV-1968322_46	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1968322_46	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1968322_47	PHROG	phrog_88	major tail protein	tail
UHGV-1968322_47	UniRef90	UniRef90_A0A3E3EG64	Phage tail protein	NA
UHGV-1968322_47	eggNOG-mapper	476272.RUMHYD_01477	COG NOG11304 non supervised orthologous group	NA
UHGV-1968322_47	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1968322_47	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1968322_48	PHROG	phrog_709	NA	unknown function
UHGV-1968322_48	eggNOG-mapper	1392487.JIAD01000001_gene514	NA	NA
UHGV-1968322_48	Structural annotation	PF11836	NA	NA
UHGV-1968322_49	PHROG	phrog_3033	NA	unknown function
UHGV-1968322_50	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-1968322_50	UniRef90	UniRef90_A0A3E3EH06	Phage tail tape measure protein	NA
UHGV-1968322_50	eggNOG-mapper	903814.ELI_1307	Phage-related minor tail protein	NA
UHGV-1968322_50	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1968322_50	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1968322_50	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-1968322_50	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1968322_51	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1968322_51	UniRef90	UniRef90_A0A3E3EI44	Phage tail protein	NA
UHGV-1968322_51	eggNOG-mapper	999413.HMPREF1094_02000	phage tail	NA
UHGV-1968322_51	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1968322_51	COG	COG4722	Phage-related protein YomH	NA
UHGV-1968322_51	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1968322_52	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1968322_52	UniRef90	UniRef90_A0A3E3EG68	Peptidase S74 domain-containing protein	NA
UHGV-1968322_52	eggNOG-mapper	1232446.BAIE02000002_gene836	Phage minor structural protein	NA
UHGV-1968322_52	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-1968322_52	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1968322_52	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-1968322_52	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1968322_52	COG	COG4926	Phage-related protein	NA
UHGV-1968322_52	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-1968322_53	eggNOG-mapper	999413.HMPREF1094_01998	NA	NA
UHGV-1968322_55	PHROG	phrog_38707	NA	unknown function
UHGV-1968322_55	eggNOG-mapper	537007.BLAHAN_05239	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-1968322_55	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-1968322_56	PHROG	phrog_24267	NA	unknown function
UHGV-1968322_56	UniRef90	UniRef90_R5HGH3	Phage minor structural protein	NA
UHGV-1968322_56	eggNOG-mapper	482234.SCAZ3_03280	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-1968322_56	COG	COG4675	Phage tail collar domain	NA
UHGV-1968322_57	UniRef90	UniRef90_R7KBG5	Conserved domain protein	NA
UHGV-1968322_58	PHROG	phrog_1382	NA	unknown function
UHGV-1968322_58	Structural annotation	NF040910	NA	NA
UHGV-1968322_59	PHROG	phrog_199	holin	lysis
UHGV-1968322_59	UniRef90	UniRef90_UPI000E414CC9	phage holin family protein	NA
UHGV-1968322_59	eggNOG-mapper	469596.HMPREF9488_01337	Bacteriophage holin family	NA
UHGV-1968322_59	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1968322_59	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1968322_59	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1968322_59	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1968322_60	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1968322_60	PHROG	phrog_1794	amidase	lysis
UHGV-1968322_60	UniRef90	UniRef90_A0A3E3E9Q5	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-1968322_60	eggNOG-mapper	1286171.EAL2_c06030	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-1968322_60	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1968322_60	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1968322_60	Structural annotation	PF01510, PF18342, MF_04111, NF008758, NF040670, COG5632	NA	NA
UHGV-1968322_62	eggNOG-mapper	1232446.BAIE02000003_gene848	NA	NA