UHGV-1968395

Genome information

Genome length 36,072 bps

CDS count 44

Completeness 93.75% (high-quality)

geNomad score 0.9788

Prediction confidence Confident

Genome information
Genome ID	UHGV-1968395
vOTU ID	vOTU-062360
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300014804\|Ga0134371_1000014\|provirus_62298_98369
BioSample	NA
Country	Germany
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.75% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9788
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	5.63
Jumbo phage	No

Genome content
Genome length	36,072 bps
GC content	62.54%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	94.57%
Average CDS length	778.77 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1968395_1	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1968395_1	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-1968395_1	UniRef90	UniRef90_A0A7X8AVT1	Helix-turn-helix transcriptional regulator	NA
UHGV-1968395_1	eggNOG-mapper	203119.Cthe_2461	sequence-specific DNA binding	NA
UHGV-1968395_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1968395_1	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1968395_3	PHROG	phrog_14088	NA	unknown function
UHGV-1968395_3	UniRef90	UniRef90_A0A3E5GTA5	Carboxypeptidase	NA
UHGV-1968395_3	eggNOG-mapper	626523.GCWU000342_01045	NA	NA
UHGV-1968395_4	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1968395_4	UniRef90	UniRef90_UPI001C3A6F66	NA	NA
UHGV-1968395_4	eggNOG-mapper	588581.Cpap_0887	NA	NA
UHGV-1968395_4	Structural annotation	COG2250	NA	NA
UHGV-1968395_6	eggNOG-mapper	693746.OBV_21850	NA	NA
UHGV-1968395_10	PHROG	phrog_38338	NA	unknown function
UHGV-1968395_10	UniRef90	UniRef90_UPI00189B3582	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-1968395_10	eggNOG-mapper	693746.OBV_25410	NA	NA
UHGV-1968395_11	PHROG	phrog_8470	NA	unknown function
UHGV-1968395_11	UniRef90	UniRef90_UPI00195E492B	PcfJ domain-containing protein	NA
UHGV-1968395_11	eggNOG-mapper	1378168.N510_01842	PcfJ-like protein	NA
UHGV-1968395_11	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-1968395_11	Structural annotation	PF14284	NA	NA
UHGV-1968395_12	PHROG	phrog_15609	NA	unknown function
UHGV-1968395_12	UniRef90	UniRef90_UPI001C102D5E	NA	NA
UHGV-1968395_12	eggNOG-mapper	693746.OBV_25390	NA	NA
UHGV-1968395_12	Pfam	PF11300	NA	DUF3102
UHGV-1968395_12	COG	COG2433	Possible nuclease of RNase H fold, RuvC/YqgF family	NA
UHGV-1968395_12	Structural annotation	PF11300, PF07321, NF038070	NA	NA
UHGV-1968395_13	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1968395_13	UniRef90	UniRef90_R6TQ60	Putative terminase large subunit	NA
UHGV-1968395_13	eggNOG-mapper	693746.OBV_23980	phage Terminase large subunit	NA
UHGV-1968395_13	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-1968395_13	Structural annotation	PF03237, PF17289, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1968395_15	UniRef90	UniRef90_A0A2V2EEG3	NA	NA
UHGV-1968395_15	Pfam	PF04448	NA	DUF551
UHGV-1968395_16	PHROG	phrog_3136	NA	unknown function
UHGV-1968395_16	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-1968395_16	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-1968395_16	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-1968395_18	UniRef90	UniRef90_A0A415G5B2	NA	NA
UHGV-1968395_18	eggNOG-mapper	411461.DORFOR_01165	NA	NA
UHGV-1968395_18	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-1968395_19	Structural annotation	PF09228	NA	NA
UHGV-1968395_20	Structural annotation	NF040595	NA	NA
UHGV-1968395_21	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1968395_21	eggNOG-mapper	1226322.HMPREF1545_03841	NA	NA
UHGV-1968395_21	Structural annotation	PF01446, NF041486	NA	NA
UHGV-1968395_22	eggNOG-mapper	1226322.HMPREF1545_00288	NA	NA
UHGV-1968395_23	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1968395_23	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1968395_23	UniRef90	UniRef90_G4KPV4	Terminase small subunit family protein	NA
UHGV-1968395_23	eggNOG-mapper	693746.OBV_23940	DNA packaging	NA
UHGV-1968395_23	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1968395_23	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1968395_23	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1968395_24	PHROG	phrog_156	portal protein	head and packaging
UHGV-1968395_24	eggNOG-mapper	693746.OBV_23930	NA	NA
UHGV-1968395_24	Structural annotation	PF12236, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-1968395_25	Structural annotation	PF04606	NA	NA
UHGV-1968395_27	PHROG	phrog_35275	NA	unknown function
UHGV-1968395_27	eggNOG-mapper	693746.OBV_23910	NA	NA
UHGV-1968395_28	PHROG	phrog_24113	NA	unknown function
UHGV-1968395_28	eggNOG-mapper	1226322.HMPREF1545_03847	NA	NA
UHGV-1968395_28	Structural annotation	PF11133, COG5471	NA	NA
UHGV-1968395_29	PHROG	phrog_371	major head protein	head and packaging
UHGV-1968395_29	UniRef90	UniRef90_R6TFU9	Mu-like_gpT domain-containing protein	NA
UHGV-1968395_29	eggNOG-mapper	693746.OBV_23890	NA	NA
UHGV-1968395_29	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-1968395_29	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1968395_30	eggNOG-mapper	693746.OBV_23880	NA	NA
UHGV-1968395_30	Structural annotation	PF20387	NA	NA
UHGV-1968395_31	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-1968395_31	eggNOG-mapper	693746.OBV_23870	NA	NA
UHGV-1968395_31	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-1968395_32	eggNOG-mapper	1408437.JNJN01000002_gene1389	NA	NA
UHGV-1968395_34	eggNOG-mapper	2754.EH55_00535	NA	NA
UHGV-1968395_35	PHROG	phrog_4105	NA	unknown function
UHGV-1968395_35	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-1968395_35	eggNOG-mapper	411460.RUMTOR_01326	NA	NA
UHGV-1968395_37	PHROG	phrog_7805	NA	unknown function
UHGV-1968395_37	UniRef90	UniRef90_UPI0009E7940D	SEC-C domain-containing protein	NA
UHGV-1968395_37	eggNOG-mapper	768726.HMPREF9178_1597	NA	NA
UHGV-1968395_38	PHROG	phrog_1129	holin	lysis
UHGV-1968395_38	UniRef90	UniRef90_A0A1C7FPV3	Enolase	NA
UHGV-1968395_38	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-1968395_38	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1968395_38	Structural annotation	PF06946	NA	NA
UHGV-1968395_39	KOfam	K22519	PTAC5; protein disulfide-isomerase [EC:5.3.4.1]	NA
UHGV-1968395_39	PHROG	phrog_1493	endolysin	lysis
UHGV-1968395_39	UniRef90	UniRef90_A0A810PUG7	SPOR domain-containing protein	NA
UHGV-1968395_39	eggNOG-mapper	1235794.C811_01391	Ami_2	NA
UHGV-1968395_39	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1968395_39	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-1968395_39	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-1968395_39	Structural annotation	PF01520, PF01471, MF_00562, TIGR02883, COG0860, COG3409	NA	NA
UHGV-1968395_40	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-1968395_41	PHROG	phrog_13543	NA	unknown function
UHGV-1968395_41	eggNOG-mapper	445971.ANASTE_00728	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair	NA
UHGV-1968395_41	Pfam	PF18819	Phage MuF-C-terminal domain	MuF_C
UHGV-1968395_41	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-1968395_41	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-1968395_42	KOfam	K07448	mrr; restriction system protein	NA
UHGV-1968395_42	UniRef90	UniRef90_A0A3D4D7R4	SWIM-type domain-containing protein	NA
UHGV-1968395_42	Pfam	PF04434	SWIM zinc finger	SWIM
UHGV-1968395_42	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-1968395_42	COG	COG1525	Endonuclease YncB, thermonuclease family	NA
UHGV-1968395_42	Structural annotation	PF04471, MF_00722, NF002876, COG1787	NA	NA
UHGV-1968395_43	KOfam	K06334	cotJC; spore coat protein JC	NA
UHGV-1968395_43	PHROG	phrog_7573	NA	unknown function
UHGV-1968395_43	UniRef90	UniRef90_A0A1Q6R0Z6	Rubrerythrin family protein	NA
UHGV-1968395_43	eggNOG-mapper	1226322.HMPREF1545_03685	Manganese containing catalase	NA
UHGV-1968395_43	Pfam	PF05067	Manganese containing catalase	Mn_catalase
UHGV-1968395_43	COG	COG3546	Mn-containing catalase (includes spore coat protein CotJC)	NA
UHGV-1968395_43	Structural annotation	PF05067, MF_00931, TIGR04535, COG3546	NA	NA
UHGV-1968395_44	eggNOG-mapper	1235797.C816_03380	NA	NA