UHGV-1968763

Genome information

vOTU vOTU-019493

Genome length 23,731 bps

CDS count 37

Completeness 59.53% (medium-quality)

geNomad score 0.9809

Prediction confidence Confident

Genome information
Genome ID	UHGV-1968763
vOTU ID	vOTU-019493
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300014956\|Ga0134434_1000132\|provirus_44109_67839
BioSample	SAMN03922513
Country	Germany
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.53% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9809
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.71
Jumbo phage	No

Genome content
Genome length	23,731 bps
GC content	52.03%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	90.09%
Average CDS length	581.03 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1968763_1	KOfam	K00640	cysE; serine O-acetyltransferase [EC:2.3.1.30]	NA
UHGV-1968763_1	PHROG	phrog_2154	NA	unknown function
UHGV-1968763_1	UniRef90	UniRef90_A0A3D3ZBM0	Serine acetyltransferase	NA
UHGV-1968763_1	eggNOG-mapper	411462.DORLON_02099	Bacterial transferase hexapeptide (six repeats)	NA
UHGV-1968763_1	Pfam	PF00132	Bacterial transferase hexapeptide (six repeats)	Hexapep
UHGV-1968763_1	COG	COG1045	Serine acetyltransferase	NA
UHGV-1968763_2	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1968763_2	PHROG	phrog_95	integrase	integration and excision
UHGV-1968763_2	UniRef90	UniRef90_UPI00164E9A6A	recombinase family protein	NA
UHGV-1968763_2	eggNOG-mapper	718252.FP2_29980	NA	NA
UHGV-1968763_2	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1968763_2	Pfam	PF07508	Recombinase	Recombinase
UHGV-1968763_2	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1968763_2	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1968763_2	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-1968763_3	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-1968763_4	UniRef90	UniRef90_A0A2N2CQC6	XRE family transcriptional regulator	NA
UHGV-1968763_4	eggNOG-mapper	1378168.N510_01712	NA	NA
UHGV-1968763_4	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1968763_5	UniRef90	UniRef90_A0A2Z4Q9Z4	Nascent polypeptide-associated complex domain protein	NA
UHGV-1968763_5	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-1968763_6	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1968763_6	PHROG	phrog_10250	NA	unknown function
UHGV-1968763_6	UniRef90	UniRef90_U2QJE0	Phage terminase, large subunit, PBSX family	NA
UHGV-1968763_6	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-1968763_6	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1968763_6	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1968763_6	COG	COG1783	Phage terminase large subunit	NA
UHGV-1968763_6	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1968763_8	PHROG	phrog_533	portal protein	head and packaging
UHGV-1968763_8	UniRef90	UniRef90_UPI000680A1DB	phage portal protein	NA
UHGV-1968763_8	eggNOG-mapper	411471.SUBVAR_06996	NA	NA
UHGV-1968763_8	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1968763_9	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1968763_9	UniRef90	UniRef90_UPI0006814CA4	phage minor capsid protein	NA
UHGV-1968763_9	eggNOG-mapper	693746.OBV_18050	Phage minor capsid protein 2	NA
UHGV-1968763_9	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1968763_9	COG	COG2369	NA	NA
UHGV-1968763_9	Structural annotation	PF06152, PF15542, TIGR01641, COG2369	NA	NA
UHGV-1968763_12	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1968763_12	UniRef90	UniRef90_G4L0H8	Phage minor structural GP20 family protein	NA
UHGV-1968763_12	eggNOG-mapper	693746.OBV_18080	COG NOG36366 non supervised orthologous group	NA
UHGV-1968763_12	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1968763_12	Structural annotation	PF06810	NA	NA
UHGV-1968763_13	PHROG	phrog_212	major head protein	head and packaging
UHGV-1968763_13	UniRef90	UniRef90_A0A354MR33	Phage capsid protein	NA
UHGV-1968763_13	eggNOG-mapper	935836.JAEL01000021_gene1494	NA	NA
UHGV-1968763_13	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-1968763_14	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1968763_14	eggNOG-mapper	693746.OBV_18110	NA	NA
UHGV-1968763_15	Structural annotation	PF20536, MF_01370, TIGR02126	NA	NA
UHGV-1968763_16	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1968763_16	UniRef90	UniRef90_UPI0006805998	minor capsid protein	NA
UHGV-1968763_16	eggNOG-mapper	33035.JPJF01000106_gene3128	NA	NA
UHGV-1968763_16	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1968763_16	Structural annotation	PF11114	NA	NA
UHGV-1968763_17	PHROG	phrog_3266	tail completion	connector
UHGV-1968763_17	eggNOG-mapper	693746.OBV_18140	NA	NA
UHGV-1968763_17	Structural annotation	PF08873	NA	NA
UHGV-1968763_18	PHROG	phrog_3099	NA	unknown function
UHGV-1968763_18	eggNOG-mapper	693746.OBV_18150	NA	NA
UHGV-1968763_18	Structural annotation	TIGR02126	NA	NA
UHGV-1968763_19	PHROG	phrog_11299	NA	unknown function
UHGV-1968763_19	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-1968763_19	Structural annotation	PF10666	NA	NA
UHGV-1968763_20	PHROG	phrog_706	NA	unknown function
UHGV-1968763_20	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-1968763_20	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-1968763_20	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1968763_20	Structural annotation	PF06854	NA	NA
UHGV-1968763_21	KOfam	K07448	mrr; restriction system protein	NA
UHGV-1968763_21	PHROG	phrog_19856	NA	unknown function
UHGV-1968763_21	UniRef90	UniRef90_A0A2Z4Q9W7	Restriction endonuclease	NA
UHGV-1968763_21	eggNOG-mapper	1235790.C805_00010	Restriction endonuclease	NA
UHGV-1968763_21	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-1968763_21	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-1968763_21	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-1968763_21	Structural annotation	PF04471, NF002876, COG1787	NA	NA
UHGV-1968763_22	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1968763_22	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-1968763_22	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-1968763_22	COG	COG1511	NA	NA
UHGV-1968763_22	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-1968763_23	PHROG	phrog_1194	NA	unknown function
UHGV-1968763_23	eggNOG-mapper	1232443.BAIA02000078_gene17	NA	NA
UHGV-1968763_23	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-1968763_24	PHROG	phrog_6616	tail protein	tail
UHGV-1968763_25	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-1968763_25	PHROG	phrog_894	endolysin	lysis
UHGV-1968763_25	UniRef90	UniRef90_UPI0012559453	D-Ala-D-Ala carboxypeptidase family metallohydrolase	NA
UHGV-1968763_25	eggNOG-mapper	2754.EH55_01340	Peptidase M15	NA
UHGV-1968763_25	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-1968763_25	COG	COG3108	NA	NA
UHGV-1968763_25	Structural annotation	PF08291, NF000086, COG3108	NA	NA
UHGV-1968763_26	PHROG	phrog_937	hemolysin	other
UHGV-1968763_26	eggNOG-mapper	1007096.BAGW01000017_gene814	NA	NA
UHGV-1968763_27	PHROG	phrog_10091	holin	lysis
UHGV-1968763_27	UniRef90	UniRef90_D7GNX3	Holin, phage phi LC3 family	NA
UHGV-1968763_27	eggNOG-mapper	97139.C824_05950	Bacteriophage holin	NA
UHGV-1968763_27	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-1968763_27	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-1968763_27	COG	COG5546	NA	NA
UHGV-1968763_27	Structural annotation	COG5546	NA	NA
UHGV-1968763_28	Structural annotation	PF01047, MF_00620, COG2771	NA	NA
UHGV-1968763_29	PHROG	phrog_3754	NA	unknown function
UHGV-1968763_29	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-1968763_30	PHROG	phrog_21718	NA	unknown function
UHGV-1968763_30	UniRef90	UniRef90_A0A285PT36	Consensus disorder prediction	NA
UHGV-1968763_31	PHROG	phrog_22984	NA	unknown function
UHGV-1968763_32	PHROG	phrog_16490	NA	unknown function
UHGV-1968763_32	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-1968763_34	PHROG	phrog_20016	NA	unknown function
UHGV-1968763_34	UniRef90	UniRef90_A0A345BPX4	Carbohydrate binding domain/collagen triple helix repeat protein	NA
UHGV-1968763_34	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-1968763_34	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1968763_35	Structural annotation	PF12510	NA	NA
UHGV-1968763_37	PHROG	phrog_38239	NA	unknown function
UHGV-1968763_37	UniRef90	UniRef90_R5EF16	Ferredoxin:thioredoxin reductase	NA
UHGV-1968763_37	eggNOG-mapper	1160721.RBI_I01767	Ferredoxin thioredoxin reductase catalytic beta chain	NA
UHGV-1968763_37	Pfam	PF02943	Ferredoxin thioredoxin reductase catalytic beta chain	FeThRed_B
UHGV-1968763_37	Structural annotation	NF041072, COG4802	NA	NA