UHGV-1969283

Genome information

Genome length 28,397 bps

CDS count 35

Completeness 99.56% (high-quality)

geNomad score 0.9786

Prediction confidence Confident

Genome information
Genome ID	UHGV-1969283
vOTU ID	vOTU-007682
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300014921\|Ga0169822_100082\|provirus_19803_48199
BioSample	SAMEA2580234
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.56% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	Yes

Viral signal
geNomad score	0.9786
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.9
Jumbo phage	No

Genome content
Genome length	28,397 bps
GC content	35.41%
Genetic code	Blepharisma nuclear code (15)
CDS count	35
CDS density	90.51%
Average CDS length	737.57 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1969283_4	eggNOG-mapper	1347393.HG726020_gene906	NA	NA
UHGV-1969283_4	Structural annotation	PF12187, MF_01490, NF040854, COG1591	NA	NA
UHGV-1969283_6	UniRef90	UniRef90_UPI000C1C2052	DEAD/DEAH box helicase family protein	NA
UHGV-1969283_6	eggNOG-mapper	435590.BVU_2296	NA	NA
UHGV-1969283_6	Structural annotation	PF02399, MF_00965, TIGR00614, COG1201	NA	NA
UHGV-1969283_7	Structural annotation	NF007216	NA	NA
UHGV-1969283_8	Structural annotation	PF12651, NF041793, COG4710	NA	NA
UHGV-1969283_9	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-1969283_9	UniRef90	UniRef90_D7IS85	Phage terminase, small subunit, P27 family	NA
UHGV-1969283_9	eggNOG-mapper	1122931.AUAE01000036_gene1073	Phage terminase, small subunit	NA
UHGV-1969283_9	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1969283_9	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-1969283_9	COG	COG3747	Phage terminase, small subunit	NA
UHGV-1969283_9	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1969283_10	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-1969283_11	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1969283_11	UniRef90	UniRef90_D7IS84	Phage terminase large subunit	NA
UHGV-1969283_11	eggNOG-mapper	1122931.AUAE01000036_gene1072	Phage Terminase	NA
UHGV-1969283_11	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1969283_11	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1969283_11	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1969283_11	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1969283_12	PHROG	phrog_12	portal protein	head and packaging
UHGV-1969283_12	UniRef90	UniRef90_K6AEA9	HK97 family phage portal protein	NA
UHGV-1969283_12	eggNOG-mapper	908937.Prede_1355	Phage portal protein	NA
UHGV-1969283_12	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1969283_12	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1969283_12	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1969283_12	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1969283_13	PHROG	phrog_23820	tail fiber protein	tail
UHGV-1969283_13	eggNOG-mapper	261726.Q6R4W0_9CAUD	NA	NA
UHGV-1969283_22	KOfam	K06904	NA	NA
UHGV-1969283_22	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1969283_22	UniRef90	UniRef90_A0A496C2C5	HK97 family phage prohead protease	NA
UHGV-1969283_22	eggNOG-mapper	908937.Prede_1354	Caudovirus prohead serine protease	NA
UHGV-1969283_22	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1969283_22	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1969283_22	COG	COG3740	Phage head maturation protease	NA
UHGV-1969283_22	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1969283_23	PHROG	phrog_617	major head protein	head and packaging
UHGV-1969283_23	UniRef90	UniRef90_A0A3R6IXJ0	Phage major capsid protein	NA
UHGV-1969283_23	eggNOG-mapper	1122931.AUAE01000036_gene1069	Phage capsid family	NA
UHGV-1969283_23	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1969283_23	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1969283_23	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1969283_23	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1969283_24	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-1969283_24	UniRef90	UniRef90_A0A316RGV0	Phage gp6-like head-tail connector protein	NA
UHGV-1969283_24	eggNOG-mapper	908937.Prede_1352	Phage gp6-like head-tail connector protein	NA
UHGV-1969283_24	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1969283_24	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1969283_24	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1969283_25	PHROG	phrog_25	head closure Hc1	connector
UHGV-1969283_25	UniRef90	UniRef90_D7IS77	Phage head-tail adaptor	NA
UHGV-1969283_25	eggNOG-mapper	908937.Prede_1351	Phage head-tail joining protein	NA
UHGV-1969283_25	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1969283_25	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1969283_26	eggNOG-mapper	1347393.HG726020_gene892	NA	NA
UHGV-1969283_26	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-1969283_27	PHROG	phrog_347	tail terminator	connector
UHGV-1969283_27	UniRef90	UniRef90_UPI000E03762E	NA	NA
UHGV-1969283_27	eggNOG-mapper	1347393.HG726020_gene891	NA	NA
UHGV-1969283_27	Structural annotation	PF11367, COG5003	NA	NA
UHGV-1969283_28	PHROG	phrog_1407	major tail protein	tail
UHGV-1969283_28	UniRef90	UniRef90_UPI000DFD5B0C	phage tail tube protein	NA
UHGV-1969283_28	eggNOG-mapper	1236517.BAKO01000013_gene1445	Phage tail tube protein	NA
UHGV-1969283_28	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-1969283_28	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1969283_29	eggNOG-mapper	908937.Prede_1347	NA	NA
UHGV-1969283_29	Structural annotation	PF11836	NA	NA
UHGV-1969283_31	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-1969283_31	eggNOG-mapper	1453496.AT03_15205	COG5281, Phage-related minor tail protein	NA
UHGV-1969283_31	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1969283_31	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1969283_31	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1969283_31	Structural annotation	PF10145, MF_04138, TIGR01760, COG5280	NA	NA
UHGV-1969283_32	eggNOG-mapper	908937.Prede_1343	NA	NA
UHGV-1969283_32	Structural annotation	PF14594, TIGR03361, COG4379	NA	NA
UHGV-1969283_34	UniRef90	UniRef90_UPI0004833697	YrzE family protein	NA
UHGV-1969283_35	PHROG	phrog_1501	NA	unknown function
UHGV-1969283_35	UniRef90	UniRef90_A0A843GJJ8	NA	NA
UHGV-1969283_35	eggNOG-mapper	679935.Alfi_0537	NA	NA
UHGV-1969283_35	Pfam	PF18925	NA	DUF5675
UHGV-1969283_35	Structural annotation	PF18925	NA	NA