UHGV-1970518

Genome information

vOTU vOTU-019938

Genome length 31,985 bps

CDS count 47

Completeness 89.12% (medium-quality)

geNomad score 0.9733

Prediction confidence Confident

Genome information
Genome ID	UHGV-1970518
vOTU ID	vOTU-019938
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300014927\|Ga0169766_100049\|provirus_96233_128217
BioSample	SAMEA2580178
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.12% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	26
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9733
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	66.11
Jumbo phage	No

Genome content
Genome length	31,985 bps
GC content	37.12%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	92.40%
Average CDS length	633.83 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1970518_1	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-1970518_1	PHROG	phrog_998	endolysin	lysis
UHGV-1970518_1	UniRef90	UniRef90_A0A6N3FK05	Bacteriophage peptidoglycan hydrolase	NA
UHGV-1970518_1	eggNOG-mapper	272623.L70517	EVIDENCE BY HOMOLOGY BIO14.03 Phage related functions and prophages	NA
UHGV-1970518_1	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-1970518_1	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1970518_1	Structural annotation	PF00877, TIGR02594, COG3738	NA	NA
UHGV-1970518_2	PHROG	phrog_10091	holin	lysis
UHGV-1970518_2	UniRef90	UniRef90_A0A6N3FKG7	Bacteriophage holin	NA
UHGV-1970518_2	eggNOG-mapper	553184.ATORI0001_0989	COG5546 Small integral membrane protein	NA
UHGV-1970518_2	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-1970518_2	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-1970518_2	COG	COG5546	NA	NA
UHGV-1970518_2	Structural annotation	COG5546	NA	NA
UHGV-1970518_3	PHROG	phrog_2429	involved in bacteriocin production or immunity	moron, auxiliary metabolic gene and host takeover
UHGV-1970518_3	UniRef90	UniRef90_UPI0003A7F9DF	BhlA/UviB family holin-like peptide	NA
UHGV-1970518_3	eggNOG-mapper	1140001.I571_01848	BhlA holin family	NA
UHGV-1970518_3	Pfam	PF10960	BhlA holin family	Holin_BhlA
UHGV-1970518_4	PHROG	phrog_10054	NA	unknown function
UHGV-1970518_4	UniRef90	UniRef90_A0A6N3FM14	BppU_N domain-containing protein	NA
UHGV-1970518_4	eggNOG-mapper	1158604.I591_00541	InterPro IPR018913 Domain of	NA
UHGV-1970518_4	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-1970518_5	KOfam	K03651	cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]	NA
UHGV-1970518_5	PHROG	phrog_7158	NA	unknown function
UHGV-1970518_5	UniRef90	UniRef90_A0A6N3FM49	Metallophos domain-containing protein	NA
UHGV-1970518_5	eggNOG-mapper	1260356.D920_01482	acid phosphatase activity	NA
UHGV-1970518_5	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-1970518_5	COG	COG1409	3',5'-cyclic AMP phosphodiesterase CpdA	NA
UHGV-1970518_6	PHROG	phrog_6042	minor head protein	head and packaging
UHGV-1970518_6	UniRef90	UniRef90_A0A6N3FKR7	BppU_N domain-containing protein	NA
UHGV-1970518_6	eggNOG-mapper	565664.EFXG_01759	NA	NA
UHGV-1970518_6	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-1970518_7	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-1970518_7	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1970518_7	UniRef90	UniRef90_A0A6N3FL01	Murein DD-endopeptidase MepM	NA
UHGV-1970518_7	eggNOG-mapper	1158604.I591_00538	Prophage endopeptidase tail	NA
UHGV-1970518_7	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1970518_7	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-1970518_7	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-1970518_7	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1970518_7	COG	COG4926	Phage-related protein	NA
UHGV-1970518_7	Structural annotation	PF14594, PF01551, PF18013, TIGR01665, NF040883, COG4926, COG0739	NA	NA
UHGV-1970518_8	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1970518_8	UniRef90	UniRef90_A0A6N3FLH6	Phage tail protein	NA
UHGV-1970518_8	eggNOG-mapper	1158604.I591_00537	phage tail	NA
UHGV-1970518_8	COG	COG4722	Phage-related protein YomH	NA
UHGV-1970518_8	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1970518_9	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-1970518_9	UniRef90	UniRef90_UPI001CF17DE2	phage tail tape measure protein	NA
UHGV-1970518_9	eggNOG-mapper	1158604.I591_00536	Phage-related minor tail protein	NA
UHGV-1970518_9	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1970518_9	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1970518_9	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1970518_9	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1970518_10	PHROG	phrog_4888	tail assembly chaperone	tail
UHGV-1970518_10	UniRef90	UniRef90_W7D9N8	NA	NA
UHGV-1970518_10	eggNOG-mapper	565664.EFXG_02653	NA	NA
UHGV-1970518_10	Structural annotation	PF11836	NA	NA
UHGV-1970518_11	PHROG	phrog_11502	tail protein	tail
UHGV-1970518_11	UniRef90	UniRef90_A0A8E2CER8	Phage tail protein	NA
UHGV-1970518_11	eggNOG-mapper	1158604.I591_00534	NA	NA
UHGV-1970518_11	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1970518_12	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1970518_12	UniRef90	UniRef90_A0A132YZK7	HK97 gp10 family phage protein	NA
UHGV-1970518_12	eggNOG-mapper	565664.EFXG_02655	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1970518_12	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1970518_12	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1970518_12	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-1970518_13	PHROG	phrog_78	tail terminator	connector
UHGV-1970518_13	UniRef90	UniRef90_A0A377L6F7	NA	NA
UHGV-1970518_13	eggNOG-mapper	565664.EFXG_02656	NA	NA
UHGV-1970518_13	Structural annotation	PF20765	NA	NA
UHGV-1970518_14	PHROG	phrog_4014	head-tail adaptor	connector
UHGV-1970518_14	UniRef90	UniRef90_A0A2K8TFW3	Phage head-tail joining protein	NA
UHGV-1970518_14	eggNOG-mapper	1158604.I591_00531	Phage head-tail joining protein	NA
UHGV-1970518_14	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1970518_14	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1970518_14	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1970518_15	PHROG	phrog_4609	NA	unknown function
UHGV-1970518_15	UniRef90	UniRef90_UPI0008A9CFE8	head-tail connector protein	NA
UHGV-1970518_15	eggNOG-mapper	1158604.I591_00530	Phage gp6-like head-tail connector protein	NA
UHGV-1970518_15	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1970518_15	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1970518_16	PHROG	phrog_7440	major tail protein	tail
UHGV-1970518_16	UniRef90	UniRef90_UPI0013EB9891	fibronectin type III domain-containing protein	NA
UHGV-1970518_16	eggNOG-mapper	1260356.D920_00142	NA	NA
UHGV-1970518_16	Structural annotation	PF21605	NA	NA
UHGV-1970518_17	PHROG	phrog_10	major head protein	head and packaging
UHGV-1970518_17	UniRef90	UniRef90_UPI0008A89AFE	phage major capsid protein	NA
UHGV-1970518_17	eggNOG-mapper	1158604.I591_00529	Phage capsid family	NA
UHGV-1970518_17	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1970518_17	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1970518_17	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1970518_17	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1970518_18	KOfam	K06904	NA	NA
UHGV-1970518_18	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1970518_18	UniRef90	UniRef90_A0A377KN37	Phage prohead protease, HK97 family	NA
UHGV-1970518_18	eggNOG-mapper	1201292.DR75_1639	Caudovirus prohead serine protease	NA
UHGV-1970518_18	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1970518_18	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1970518_18	COG	COG3740	Phage head maturation protease	NA
UHGV-1970518_18	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1970518_19	PHROG	phrog_12	portal protein	head and packaging
UHGV-1970518_19	UniRef90	UniRef90_A0A377KN49	Phage portal protein	NA
UHGV-1970518_19	eggNOG-mapper	565664.EFXG_02661	Phage portal protein	NA
UHGV-1970518_19	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1970518_19	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1970518_19	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1970518_20	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1970518_20	UniRef90	UniRef90_A0A132P9B0	Terminase	NA
UHGV-1970518_20	eggNOG-mapper	565664.EFXG_02662	Phage Terminase	NA
UHGV-1970518_20	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1970518_20	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1970518_20	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1970518_20	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1970518_21	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-1970518_21	UniRef90	UniRef90_A0A2K8TFV2	Terminase small subunit	NA
UHGV-1970518_21	eggNOG-mapper	565664.EFXG_02663	NA	NA
UHGV-1970518_21	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1970518_22	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1970518_22	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1970518_22	UniRef90	UniRef90_A0A2K8TFR7	Endonuclease	NA
UHGV-1970518_22	eggNOG-mapper	565664.EFXG_02664	HNH endonuclease	NA
UHGV-1970518_22	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1970518_22	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1970518_22	Structural annotation	PF05766	NA	NA
UHGV-1970518_23	PHROG	phrog_3281	endonuclease VII	DNA, RNA and nucleotide metabolism
UHGV-1970518_23	UniRef90	UniRef90_UPI000CF30667	Rho termination factor N-terminal domain-containing protein	NA
UHGV-1970518_23	eggNOG-mapper	565664.EFXG_02665	NA	NA
UHGV-1970518_23	Structural annotation	PF09124	NA	NA
UHGV-1970518_24	PHROG	phrog_5859	NA	unknown function
UHGV-1970518_24	eggNOG-mapper	565664.EFXG_02666	NA	NA
UHGV-1970518_24	Structural annotation	PF03927, MF_02200, NF009840, COG3471	NA	NA
UHGV-1970518_25	PHROG	phrog_3675	NA	unknown function
UHGV-1970518_25	UniRef90	UniRef90_UPI001E2A5F85	YjcQ family protein	NA
UHGV-1970518_25	eggNOG-mapper	565664.EFXG_02667	YjcQ protein	NA
UHGV-1970518_25	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-1970518_25	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-1970518_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1970518_26	UniRef90	UniRef90_R2MBH8	Sigma70_r4_2 domain-containing protein	NA
UHGV-1970518_26	eggNOG-mapper	565664.EFXG_02668	NA	NA
UHGV-1970518_26	Structural annotation	PF04545, MF_00674, TIGR02984	NA	NA
UHGV-1970518_28	PHROG	phrog_3240	NA	unknown function
UHGV-1970518_28	UniRef90	UniRef90_Q4ZC34	ORF065	NA
UHGV-1970518_28	eggNOG-mapper	1158604.I591_00517	NA	NA
UHGV-1970518_29	PHROG	phrog_6766	NA	unknown function
UHGV-1970518_29	eggNOG-mapper	565664.EFXG_02670	NA	NA
UHGV-1970518_30	PHROG	phrog_3356	transposase	integration and excision
UHGV-1970518_30	UniRef90	UniRef90_C9A182	Predicted protein	NA
UHGV-1970518_30	eggNOG-mapper	565664.EFXG_02671	NA	NA
UHGV-1970518_30	Structural annotation	PF06056	NA	NA
UHGV-1970518_31	PHROG	phrog_5403	NA	unknown function
UHGV-1970518_31	UniRef90	UniRef90_V5XLE1	Gp58	NA
UHGV-1970518_31	eggNOG-mapper	565664.EFXG_02672	NA	NA
UHGV-1970518_33	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1970518_33	UniRef90	UniRef90_UPI001F0C5654	NA	NA
UHGV-1970518_33	eggNOG-mapper	565664.EFXG_02673	NA	NA
UHGV-1970518_33	Pfam	PF06356	NA	DUF1064
UHGV-1970518_33	Structural annotation	PF06356, MF_04160, NF033179, COG2887	NA	NA
UHGV-1970518_35	PHROG	phrog_13888	NA	unknown function
UHGV-1970518_35	eggNOG-mapper	565664.EFXG_02674	NA	NA
UHGV-1970518_35	Structural annotation	PF11011	NA	NA
UHGV-1970518_36	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1970518_36	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1970518_36	UniRef90	UniRef90_R2P9W1	AAA domain-containing protein	NA
UHGV-1970518_36	eggNOG-mapper	565664.EFXG_02675	IstB-like ATP binding protein	NA
UHGV-1970518_36	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-1970518_36	COG	COG1484	DNA replication protein DnaC	NA
UHGV-1970518_36	Structural annotation	PF01695, MF_00377, NF005931, COG1484	NA	NA
UHGV-1970518_37	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1970518_37	UniRef90	UniRef90_C9A177	NA	NA
UHGV-1970518_37	eggNOG-mapper	565653.EGBG_01946	DnaD domain protein	NA
UHGV-1970518_37	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1970518_37	Structural annotation	TIGR01610	NA	NA
UHGV-1970518_38	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1970518_38	UniRef90	UniRef90_R2MBG6	NA	NA
UHGV-1970518_38	eggNOG-mapper	565664.EFXG_02677	NA	NA
UHGV-1970518_38	Pfam	PF12684	NA	DUF3799
UHGV-1970518_38	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-1970518_38	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-1970518_39	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1970518_39	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1970518_39	UniRef90	UniRef90_A0A377L4G2	RecT protein	NA
UHGV-1970518_39	eggNOG-mapper	565664.EFXG_02678	RecT family	NA
UHGV-1970518_39	Pfam	PF03837	RecT family	RecT
UHGV-1970518_39	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1970518_39	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-1970518_40	PHROG	phrog_31313	NA	unknown function
UHGV-1970518_40	UniRef90	UniRef90_C9A174	Predicted protein	NA
UHGV-1970518_40	eggNOG-mapper	1158604.I591_00507	NA	NA
UHGV-1970518_40	Structural annotation	PF09466	NA	NA
UHGV-1970518_41	PHROG	phrog_3012	NA	unknown function
UHGV-1970518_41	eggNOG-mapper	1300150.EMQU_0762	NA	NA
UHGV-1970518_41	Structural annotation	PF00410, MF_01302_B	NA	NA
UHGV-1970518_42	PHROG	phrog_24238	NA	unknown function
UHGV-1970518_43	eggNOG-mapper	1300150.EMQU_0759	NA	NA
UHGV-1970518_43	Pfam	PF05595	NA	DUF771
UHGV-1970518_43	COG	COG4707	Prophage pi2 protein 07	NA
UHGV-1970518_44	PHROG	phrog_1337	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1970518_44	UniRef90	UniRef90_A0A0V7Y7Y5	Helix-turn-helix domain protein	NA
UHGV-1970518_44	eggNOG-mapper	1140001.I571_01701	Helix-turn-helix	NA
UHGV-1970518_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1970518_45	UniRef90	UniRef90_A0A8E1YH26	Helix-turn-helix domain-containing protein	NA
UHGV-1970518_45	eggNOG-mapper	1260356.D920_01819	Helix-turn-helix XRE-family like proteins	NA
UHGV-1970518_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1970518_45	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1970518_46	PHROG	phrog_87	metallo-protease	other
UHGV-1970518_46	UniRef90	UniRef90_A0A8E1YJ11	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-1970518_46	eggNOG-mapper	1260356.D920_01820	IrrE N-terminal-like domain	NA
UHGV-1970518_46	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1970518_46	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1970518_46	Structural annotation	PF13058, MF_00745, NF003339, COG2856	NA	NA
UHGV-1970518_47	KOfam	K14059	int; integrase	NA
UHGV-1970518_47	PHROG	phrog_1	integrase	integration and excision
UHGV-1970518_47	UniRef90	UniRef90_A0A6N3FMW5	Tyrosine recombinase XerC	NA
UHGV-1970518_47	eggNOG-mapper	1300150.EMQU_0754	Pfam:Integrase_AP2	NA
UHGV-1970518_47	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-1970518_47	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1970518_47	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1970518_47	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA