UHGV-1970686

Genome information

Genome length 34,615 bps

CDS count 59

Completeness 80.20% (medium-quality)

geNomad score 0.9714

Prediction confidence Confident

Genome information
Genome ID	UHGV-1970686
vOTU ID	vOTU-041250
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300014944\|Ga0134440_100181\|provirus_1_34615
BioSample	SAMN03922520
Country	Germany
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.20% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9714
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	5.9
Jumbo phage	No

Genome content
Genome length	34,615 bps
GC content	49.99%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	85.49%
Average CDS length	504.61 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1970686_1	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-1970686_1	eggNOG-mapper	665956.HMPREF1032_03917	NA	NA
UHGV-1970686_2	PHROG	phrog_13046	NA	unknown function
UHGV-1970686_2	eggNOG-mapper	1232449.BAHV02000016_gene1817	NA	NA
UHGV-1970686_2	Structural annotation	PF20387	NA	NA
UHGV-1970686_3	PHROG	phrog_371	major head protein	head and packaging
UHGV-1970686_3	UniRef90	UniRef90_UPI001F183EB8	Mu-like prophage major head subunit gpT family protein	NA
UHGV-1970686_3	eggNOG-mapper	1226322.HMPREF1545_03848	NA	NA
UHGV-1970686_3	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-1970686_3	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1970686_4	PHROG	phrog_24113	NA	unknown function
UHGV-1970686_4	eggNOG-mapper	1226322.HMPREF1545_03847	NA	NA
UHGV-1970686_4	Structural annotation	PF11133, COG5471	NA	NA
UHGV-1970686_5	PHROG	phrog_35275	NA	unknown function
UHGV-1970686_5	eggNOG-mapper	1226322.HMPREF1545_03846	NA	NA
UHGV-1970686_8	PHROG	phrog_156	portal protein	head and packaging
UHGV-1970686_8	eggNOG-mapper	693746.OBV_23930	NA	NA
UHGV-1970686_8	Structural annotation	PF12236, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-1970686_9	KOfam	K21523	gp17; terminase, large subunit [EC:3.1.-.-]	NA
UHGV-1970686_9	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1970686_9	UniRef90	UniRef90_UPI001F401ABC	terminase family protein	NA
UHGV-1970686_9	eggNOG-mapper	316274.Haur_1384	NA	NA
UHGV-1970686_9	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1970686_9	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-1970686_9	Structural annotation	PF03354, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-1970686_10	PHROG	phrog_1233	NA	unknown function
UHGV-1970686_10	eggNOG-mapper	1232443.BAIA02000078_gene33	NA	NA
UHGV-1970686_10	Structural annotation	PF13058	NA	NA
UHGV-1970686_12	PHROG	phrog_2412	NA	unknown function
UHGV-1970686_12	eggNOG-mapper	1203554.HMPREF1476_00247	NA	NA
UHGV-1970686_14	PHROG	phrog_25027	NA	unknown function
UHGV-1970686_14	UniRef90	UniRef90_A0A1Y3RPR4	ArdcN domain-containing protein	NA
UHGV-1970686_14	eggNOG-mapper	1399942.U3PBI8_9CAUD	NA	NA
UHGV-1970686_14	Structural annotation	PF08401	NA	NA
UHGV-1970686_16	UniRef90	UniRef90_A0A2K4ZGQ9	DarA_C domain-containing protein	NA
UHGV-1970686_17	PHROG	phrog_19458	primase	DNA, RNA and nucleotide metabolism
UHGV-1970686_17	UniRef90	UniRef90_A0A7X5DCK0	LPD15 domain-containing protein	NA
UHGV-1970686_17	eggNOG-mapper	657322.FPR_26770	NA	NA
UHGV-1970686_17	COG	COG4227	Antirestriction protein ArdC	NA
UHGV-1970686_18	eggNOG-mapper	1121335.Clst_0383	NA	NA
UHGV-1970686_18	Structural annotation	PF04545	NA	NA
UHGV-1970686_19	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-1970686_19	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-1970686_19	eggNOG-mapper	428125.CLOLEP_01814	COG NOG14118 non supervised orthologous group	NA
UHGV-1970686_19	Structural annotation	NF001611, COG1694	NA	NA
UHGV-1970686_20	PHROG	phrog_22543	NA	unknown function
UHGV-1970686_21	UniRef90	UniRef90_UPI001C10265C	NA	NA
UHGV-1970686_21	Pfam	PF04448	NA	DUF551
UHGV-1970686_21	Structural annotation	NF011227	NA	NA
UHGV-1970686_22	PHROG	phrog_10714	NA	unknown function
UHGV-1970686_22	UniRef90	UniRef90_UPI001C3A10B1	Zinc ribbon domain-containing protein	NA
UHGV-1970686_22	eggNOG-mapper	1226322.HMPREF1545_00023	NA	NA
UHGV-1970686_23	PHROG	phrog_24658	NA	unknown function
UHGV-1970686_23	UniRef90	UniRef90_R6HTM1	Gp50	NA
UHGV-1970686_24	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1970686_24	PHROG	phrog_67	DNA methyltransferase	other
UHGV-1970686_24	UniRef90	UniRef90_A0A431IA37	Methyltransferase	NA
UHGV-1970686_24	eggNOG-mapper	479437.Elen_2607	DNA methylase	NA
UHGV-1970686_24	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-1970686_24	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1970686_24	COG	COG0863	DNA modification methylase	NA
UHGV-1970686_24	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-1970686_27	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1970686_27	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1970686_27	UniRef90	UniRef90_UPI0006D84EB7	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1970686_27	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1970686_27	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-1970686_28	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1970686_28	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1970686_28	UniRef90	UniRef90_A0A0W7TNB4	DNA helicase	NA
UHGV-1970686_28	eggNOG-mapper	665956.HMPREF1032_02618	Participates in initiation and elongation during chromosome replication	NA
UHGV-1970686_28	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-1970686_28	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1970686_28	COG	COG0305	Replicative DNA helicase	NA
UHGV-1970686_28	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1970686_29	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1970686_29	UniRef90	UniRef90_UPI001EE2C20A	helix-turn-helix domain-containing protein	NA
UHGV-1970686_29	eggNOG-mapper	665956.HMPREF1032_02617	Phage replisome organizer, N-terminal domain protein	NA
UHGV-1970686_29	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1970686_29	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-1970686_30	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1970686_30	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1970686_30	UniRef90	UniRef90_A0A316PHP0	Single-stranded DNA-binding protein	NA
UHGV-1970686_30	eggNOG-mapper	665956.HMPREF1032_00430	Single-stranded DNA-binding protein	NA
UHGV-1970686_30	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1970686_30	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1970686_30	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1970686_30	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1970686_30	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-1970686_31	eggNOG-mapper	886882.PPSC2_p0386	NA	NA
UHGV-1970686_32	PHROG	phrog_7566	NA	unknown function
UHGV-1970686_32	UniRef90	UniRef90_A0A371ATG2	Phosphoenolpyruvate carboxykinase	NA
UHGV-1970686_32	eggNOG-mapper	693746.OBV_25470	NA	NA
UHGV-1970686_33	PHROG	phrog_1389	NA	unknown function
UHGV-1970686_33	eggNOG-mapper	883156.HMPREF9282_01223	NA	NA
UHGV-1970686_33	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-1970686_35	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1970686_35	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-1970686_35	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-1970686_35	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-1970686_38	PHROG	phrog_4433	NA	unknown function
UHGV-1970686_38	UniRef90	UniRef90_A0A6M5C839	Putative ADP-ribosyltransferase	NA
UHGV-1970686_38	eggNOG-mapper	665950.HMPREF1025_01373	regulation of DNA-templated transcription, elongation	NA
UHGV-1970686_38	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-1970686_39	eggNOG-mapper	742735.HMPREF9467_00844	NA	NA
UHGV-1970686_44	PHROG	phrog_6401	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1970686_44	UniRef90	UniRef90_K9YFZ3	DNA binding domain protein, excisionase family	NA
UHGV-1970686_44	eggNOG-mapper	1449080.JQMV01000006_gene2254	Helix-turn-helix domain	NA
UHGV-1970686_44	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1970686_44	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-1970686_45	UniRef90	UniRef90_UPI001956DCC9	helix-turn-helix transcriptional regulator	NA
UHGV-1970686_45	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-1970686_46	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1970686_46	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1970686_46	UniRef90	UniRef90_A0A2V2F7D3	HTH cro/C1-type domain-containing protein	NA
UHGV-1970686_46	eggNOG-mapper	1297617.JPJD01000059_gene2644	addiction module antidote protein HigA	NA
UHGV-1970686_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1970686_46	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-1970686_47	PHROG	phrog_87	metallo-protease	other
UHGV-1970686_47	UniRef90	UniRef90_UPI001966F635	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-1970686_47	eggNOG-mapper	717606.PaecuDRAFT_3093	IrrE N-terminal-like domain	NA
UHGV-1970686_47	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1970686_47	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1970686_47	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1970686_49	KOfam	K02238	comEC; competence protein ComEC	NA
UHGV-1970686_49	PHROG	phrog_14556	NA	unknown function
UHGV-1970686_49	UniRef90	UniRef90_UPI000A5D3AF4	MBL fold metallo-hydrolase	NA
UHGV-1970686_49	eggNOG-mapper	1378168.N510_02494	Competence protein ComEC	NA
UHGV-1970686_49	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-1970686_49	COG	COG2333	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	NA
UHGV-1970686_50	eggNOG-mapper	1231377.C426_0586	Peptidase S24-like	NA
UHGV-1970686_50	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-1970686_51	PHROG	phrog_1758	acetyltransferase	other
UHGV-1970686_51	UniRef90	UniRef90_A0A1Y4M8L7	N-acetyltransferase	NA
UHGV-1970686_51	eggNOG-mapper	642492.Clole_1882	acetyltransferase	NA
UHGV-1970686_51	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-1970686_51	Structural annotation	PF13673, MF_02210, NF000360, COG2153	NA	NA
UHGV-1970686_53	KOfam	K14059	int; integrase	NA
UHGV-1970686_53	PHROG	phrog_1	integrase	integration and excision
UHGV-1970686_53	UniRef90	UniRef90_UPI00195DFC45	site-specific integrase	NA
UHGV-1970686_53	eggNOG-mapper	748224.HMPREF9436_01375	Phage integrase family	NA
UHGV-1970686_53	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1970686_53	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1970686_53	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1970686_54	eggNOG-mapper	428125.CLOLEP_03247	NA	NA
UHGV-1970686_55	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1970686_55	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1970686_55	UniRef90	UniRef90_A0A1Y4LNI4	DNA replication protein	NA
UHGV-1970686_55	eggNOG-mapper	665956.HMPREF1032_03350	IstB-like ATP binding protein	NA
UHGV-1970686_55	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-1970686_55	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-1970686_55	COG	COG1484	DNA replication protein DnaC	NA
UHGV-1970686_55	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-1970686_56	UniRef90	UniRef90_A0A417EGY0	Replication initiator protein A (Fragment)	NA
UHGV-1970686_56	eggNOG-mapper	665956.HMPREF1032_03351	Replication initiator protein A (RepA) N-terminus	NA
UHGV-1970686_56	COG	COG1349	DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family	NA
UHGV-1970686_57	eggNOG-mapper	665956.HMPREF1032_03352	NA	NA
UHGV-1970686_58	UniRef90	UniRef90_A0A1C6EZ90	MobC domain-containing protein	NA
UHGV-1970686_58	eggNOG-mapper	500632.CLONEX_01028	Bacterial mobilisation protein (MobC)	NA
UHGV-1970686_58	Pfam	PF05713	Bacterial mobilisation protein (MobC)	MobC
UHGV-1970686_58	Structural annotation	PF19514, NF010432	NA	NA
UHGV-1970686_59	UniRef90	UniRef90_A0A1G6C055	Transcriptional regulator, predicted component of viral defense system	NA
UHGV-1970686_59	eggNOG-mapper	411467.BACCAP_02963	Transcriptional regulator, AbiEi antitoxin	NA
UHGV-1970686_59	PADLOC	AbiEi_WP_047105540.1	AbiEi	Abi
UHGV-1970686_59	Pfam	PF13338	Transcriptional regulator, AbiEi antitoxin	AbiEi_4
UHGV-1970686_59	COG	COG5340	Abortive phage infection protein AbiEi, antitoxin conponent of an AbiEi-AbiEii TA system	NA
UHGV-1970686_59	Structural annotation	PF13338, PF09407, COG5340	NA	NA