UHGV-1971130

Genome information

Genome length 34,672 bps

CDS count 54

Completeness 67.70% (medium-quality)

geNomad score 0.9579

Prediction confidence Confident

Genome information
Genome ID	UHGV-1971130
vOTU ID	vOTU-041251
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300023493\|Ga0257031_100401\|provirus_20914_55585
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	67.70% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9579
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.76
Jumbo phage	No

Genome content
Genome length	34,672 bps
GC content	28.26%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	92.28%
Average CDS length	594.22 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1971130_2	KOfam	K18640	parM, stbA; plasmid segregation protein ParM	NA
UHGV-1971130_2	PHROG	phrog_691	partition protein	DNA, RNA and nucleotide metabolism
UHGV-1971130_2	UniRef90	UniRef90_UPI000CDAAB77	ParM/StbA family protein	NA
UHGV-1971130_2	eggNOG-mapper	1414720.CBYM010000040_gene1670	cell division	NA
UHGV-1971130_2	Pfam	PF21522	Archaeal actin homologue MreB-like, C-terminal	MreB-like_C
UHGV-1971130_2	COG	COG0849	Cell division ATPase FtsA	NA
UHGV-1971130_2	Structural annotation	PF06723, MF_02207, NF010498, COG1077	NA	NA
UHGV-1971130_5	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1971130_5	UniRef90	UniRef90_UPI00136B2580	helix-turn-helix domain-containing protein	NA
UHGV-1971130_5	eggNOG-mapper	536233.CLO_0566	NA	NA
UHGV-1971130_5	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-1971130_5	Structural annotation	PF07106, MF_01177, NF040642, COG0640	NA	NA
UHGV-1971130_6	PHROG	phrog_3180	Arc-like repressor	transcription regulation
UHGV-1971130_6	UniRef90	UniRef90_A0A5N7IQ78	Ribbon-helix-helix domain-containing protein	NA
UHGV-1971130_6	eggNOG-mapper	632245.CLP_2676	Ribbon-helix-helix domain	NA
UHGV-1971130_6	Pfam	PF12651	Ribbon-helix-helix domain	RHH_3
UHGV-1971130_6	Structural annotation	PF12651, COG4710	NA	NA
UHGV-1971130_7	PHROG	phrog_8026	NA	unknown function
UHGV-1971130_7	UniRef90	UniRef90_A0A7X9SR48	DNA-binding protein	NA
UHGV-1971130_7	eggNOG-mapper	1235792.C808_01964	HIRAN domain	NA
UHGV-1971130_7	Pfam	PF13657	HipA N-terminal domain	Couple_hipA
UHGV-1971130_7	Pfam	PF08797	HIRAN domain	HIRAN
UHGV-1971130_8	PHROG	phrog_8728	NA	unknown function
UHGV-1971130_8	UniRef90	UniRef90_UPI001A2D1AC1	HipA domain-containing protein	NA
UHGV-1971130_8	eggNOG-mapper	397287.C807_03639	HipA-like C-terminal domain	NA
UHGV-1971130_8	Pfam	PF07804	HipA-like C-terminal domain	HipA_C
UHGV-1971130_8	COG	COG3550	Serine/threonine protein kinase HipA, toxin component of the HipAB toxin-antitoxin module	NA
UHGV-1971130_8	Structural annotation	PF07804, NF007297, COG3550	NA	NA
UHGV-1971130_9	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1971130_9	PHROG	phrog_435	endolysin	lysis
UHGV-1971130_9	UniRef90	UniRef90_UPI0018A8ED38	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1971130_9	eggNOG-mapper	1414720.CBYM010000014_gene2742	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1971130_9	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1971130_9	Pfam	PF07538	Clostridial hydrophobic W	ChW
UHGV-1971130_9	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1971130_9	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860, COG5492	NA	NA
UHGV-1971130_10	PHROG	phrog_1129	holin	lysis
UHGV-1971130_10	UniRef90	UniRef90_W6RX80	Putative membrane protein	NA
UHGV-1971130_10	eggNOG-mapper	1216932.CM240_1835	Phage holin family Hol44, in holin superfamily V	NA
UHGV-1971130_10	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1971130_10	Structural annotation	PF16079	NA	NA
UHGV-1971130_11	PHROG	phrog_1193	hemolysin	other
UHGV-1971130_11	UniRef90	UniRef90_A0A8D6R147	Membrane protein	NA
UHGV-1971130_11	eggNOG-mapper	1345695.CLSA_c29710	Haemolysin XhlA	NA
UHGV-1971130_11	Pfam	PF10779	Haemolysin XhlA	XhlA
UHGV-1971130_12	PHROG	phrog_3915	NA	unknown function
UHGV-1971130_12	eggNOG-mapper	86416.Clopa_2563	NA	NA
UHGV-1971130_13	eggNOG-mapper	556261.HMPREF0240_03316	GDSL-like Lipase/Acylhydrolase	NA
UHGV-1971130_15	PHROG	phrog_7043	tail protein	tail
UHGV-1971130_15	UniRef90	UniRef90_UPI0018996BD4	phage tail protein	NA
UHGV-1971130_15	eggNOG-mapper	1499683.CCFF01000005_gene80	Phage minor structural protein	NA
UHGV-1971130_15	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1971130_15	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1971130_15	COG	COG4926	Phage-related protein	NA
UHGV-1971130_15	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1971130_16	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1971130_16	UniRef90	UniRef90_A0A174QR32	Tail component family protein	NA
UHGV-1971130_16	eggNOG-mapper	573061.Clocel_3532	tail component	NA
UHGV-1971130_16	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1971130_16	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1971130_16	COG	COG4722	Phage-related protein YomH	NA
UHGV-1971130_16	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1971130_17	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-1971130_17	UniRef90	UniRef90_A0A6B0DZQ8	PhageMin_Tail domain-containing protein	NA
UHGV-1971130_17	eggNOG-mapper	573061.Clocel_3533	tail tape measure protein	NA
UHGV-1971130_17	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1971130_17	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1971130_17	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1971130_19	PHROG	phrog_1021	NA	unknown function
UHGV-1971130_19	eggNOG-mapper	1414720.CBYM010000040_gene1653	NA	NA
UHGV-1971130_20	PHROG	phrog_885	major tail protein	tail
UHGV-1971130_20	UniRef90	UniRef90_A0A101Y2E4	Big_5 domain-containing protein	NA
UHGV-1971130_20	eggNOG-mapper	457396.CSBG_01054	Chitobiase/beta-hexosaminidase C-terminal domain	NA
UHGV-1971130_20	COG	COG2273	Beta-glucanase, GH16 family	NA
UHGV-1971130_20	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-1971130_21	PHROG	phrog_957	head protein	head and packaging
UHGV-1971130_21	eggNOG-mapper	457396.CSBG_01053	NA	NA
UHGV-1971130_21	Structural annotation	PF11367, COG4722	NA	NA
UHGV-1971130_22	UniRef90	UniRef90_UPI001A9B6FBF	HK97 gp10 family phage protein	NA
UHGV-1971130_22	eggNOG-mapper	1414720.CBYM010000040_gene1650	NA	NA
UHGV-1971130_22	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1971130_22	Structural annotation	TIGR01725	NA	NA
UHGV-1971130_23	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1971130_23	UniRef90	UniRef90_UPI00071736EE	phage head closure protein	NA
UHGV-1971130_23	eggNOG-mapper	457396.CSBG_01051	head-tail adaptor	NA
UHGV-1971130_23	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1971130_23	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1971130_23	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1971130_24	UniRef90	UniRef90_UPI00157576BA	phage gp6-like head-tail connector protein	NA
UHGV-1971130_24	eggNOG-mapper	457396.CSBG_01050	NA	NA
UHGV-1971130_25	PHROG	phrog_10	major head protein	head and packaging
UHGV-1971130_25	UniRef90	UniRef90_A0A1C6JHX3	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1971130_25	eggNOG-mapper	457396.CSBG_01049	Phage major capsid protein, HK97 family	NA
UHGV-1971130_25	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1971130_25	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1971130_25	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1971130_25	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1971130_26	KOfam	K06904	NA	NA
UHGV-1971130_26	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1971130_26	UniRef90	UniRef90_A0A316MBP5	HK97 family phage prohead protease	NA
UHGV-1971130_26	eggNOG-mapper	1211817.CCAT010000007_gene1038	Caudovirus prohead serine protease	NA
UHGV-1971130_26	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1971130_26	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1971130_26	COG	COG3740	Phage head maturation protease	NA
UHGV-1971130_26	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1971130_27	PHROG	phrog_12	portal protein	head and packaging
UHGV-1971130_27	UniRef90	UniRef90_A0A316MSJ3	Portal protein	NA
UHGV-1971130_27	eggNOG-mapper	457396.CSBG_01047	Portal protein	NA
UHGV-1971130_27	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1971130_27	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1971130_27	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1971130_28	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1971130_28	UniRef90	UniRef90_A0A1C6JHP9	Phage terminase-like protein, large subunit	NA
UHGV-1971130_28	eggNOG-mapper	457396.CSBG_01046	Terminase	NA
UHGV-1971130_28	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1971130_28	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1971130_28	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1971130_28	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1971130_29	PHROG	phrog_1066	NA	unknown function
UHGV-1971130_29	UniRef90	UniRef90_A0A316MDS1	Zinc-binding protein	NA
UHGV-1971130_29	eggNOG-mapper	457396.CSBG_01045	NA	NA
UHGV-1971130_29	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1971130_30	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-1971130_30	UniRef90	UniRef90_A0A1C6JI31	HNH endonuclease	NA
UHGV-1971130_30	eggNOG-mapper	457396.CSBG_01044	HNH endonuclease	NA
UHGV-1971130_30	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1971130_30	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1971130_30	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-1971130_32	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-1971130_32	UniRef90	UniRef90_A0A316MA76	Transposase	NA
UHGV-1971130_32	eggNOG-mapper	457396.CSBG_01043	transposase activity	NA
UHGV-1971130_32	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-1971130_32	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-1971130_32	Structural annotation	PF07141	NA	NA
UHGV-1971130_33	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-1971130_33	PHROG	phrog_56	DNA methyltransferase	other
UHGV-1971130_33	UniRef90	UniRef90_A0A3P6JP74	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-1971130_33	eggNOG-mapper	1196322.A370_05724	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-1971130_33	PADLOC	MTase_II_00039	Type II methyltransferase	RM
UHGV-1971130_33	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-1971130_33	NCBIFam	TIGR00571.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA
UHGV-1971130_33	COG	COG0338	DNA-adenine methylase	NA
UHGV-1971130_33	Structural annotation	PF02086, MF_00934, TIGR00571, COG0338	NA	NA
UHGV-1971130_34	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1971130_34	UniRef90	UniRef90_A0A1G9I4W9	Sigma-70, region 4	NA
UHGV-1971130_34	eggNOG-mapper	1415774.U728_493	DNA-templated transcription, initiation	NA
UHGV-1971130_34	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-1971130_34	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-1971130_36	PHROG	phrog_5164	NA	unknown function
UHGV-1971130_36	COG	COG4997	Predicted house-cleaning noncanonical NTP pyrophosphatase, all-alpha NTP-PPase (MazG) superfamily	NA
UHGV-1971130_38	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-1971130_38	UniRef90	UniRef90_A0A8J8PIG5	RNA-binding protein	NA
UHGV-1971130_38	eggNOG-mapper	1458852.A0A059T7N3_9CAUD	NA	NA
UHGV-1971130_38	Pfam	PF12961	NA	DUF3850
UHGV-1971130_38	Structural annotation	PF12961, MF_00684, NF003443, COG4043	NA	NA
UHGV-1971130_39	PHROG	phrog_15609	NA	unknown function
UHGV-1971130_39	UniRef90	UniRef90_UPI001CFD0A4B	NA	NA
UHGV-1971130_39	eggNOG-mapper	632245.CLP_1620	NA	NA
UHGV-1971130_39	Pfam	PF11300	NA	DUF3102
UHGV-1971130_39	COG	COG0188	DNA gyrase/topoisomerase IV, subunit A	NA
UHGV-1971130_39	Structural annotation	PF11300, NF038070	NA	NA
UHGV-1971130_40	PHROG	phrog_8470	NA	unknown function
UHGV-1971130_40	UniRef90	UniRef90_UPI001CF14225	PcfJ domain-containing protein	NA
UHGV-1971130_40	eggNOG-mapper	649747.HMPREF0083_05326	PcfJ-like protein	NA
UHGV-1971130_40	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-1971130_40	Structural annotation	PF14284	NA	NA
UHGV-1971130_41	UniRef90	UniRef90_UPI001F1646FF	PcfK-like family protein	NA
UHGV-1971130_41	eggNOG-mapper	1395513.P343_08075	NA	NA
UHGV-1971130_41	Structural annotation	PF14058	NA	NA
UHGV-1971130_43	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-1971130_43	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-1971130_43	UniRef90	UniRef90_UPI0010556A3A	3'-5' exonuclease	NA
UHGV-1971130_43	eggNOG-mapper	331678.Cphamn1_1726	PFAM Exonuclease RNase T and DNA polymerase III	NA
UHGV-1971130_43	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-1971130_43	Pfam	PF00929	Exonuclease	RNase_T
UHGV-1971130_43	COG	COG0847	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	NA
UHGV-1971130_43	Structural annotation	PF00929, MF_00157, NF006316, COG0847	NA	NA
UHGV-1971130_44	PHROG	phrog_25509	NA	unknown function
UHGV-1971130_44	eggNOG-mapper	1280689.AUJC01000003_gene942	NA	NA
UHGV-1971130_45	PHROG	phrog_3497	NA	unknown function
UHGV-1971130_45	UniRef90	UniRef90_A0A174EZL9	NA	NA
UHGV-1971130_45	eggNOG-mapper	1280689.AUJC01000003_gene939	NA	NA
UHGV-1971130_45	Structural annotation	COG5126	NA	NA
UHGV-1971130_46	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1971130_46	UniRef90	UniRef90_I2E8X7	Gp31	NA
UHGV-1971130_46	eggNOG-mapper	1415775.U729_1544	NA	NA
UHGV-1971130_46	Structural annotation	PF21578, NF033538	NA	NA
UHGV-1971130_47	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-1971130_47	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-1971130_47	UniRef90	UniRef90_L1QID1	Putative transition state transcriptional regulatory protein AbrB	NA
UHGV-1971130_47	eggNOG-mapper	1280689.AUJC01000018_gene134	AbrB family	NA
UHGV-1971130_47	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-1971130_47	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-1971130_47	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-1971130_47	Structural annotation	PF15937, TIGR01439, NF004424, COG2002	NA	NA
UHGV-1971130_50	UniRef90	UniRef90_UPI000C07BC9E	DNA-binding protein	NA
UHGV-1971130_50	eggNOG-mapper	86416.Clopa_4316	NA	NA
UHGV-1971130_51	UniRef90	UniRef90_UPI0005520212	helix-turn-helix domain-containing protein	NA
UHGV-1971130_51	eggNOG-mapper	1211817.CCAT010000007_gene1062	NA	NA
UHGV-1971130_51	Pfam	PF05339	NA	DUF739
UHGV-1971130_51	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-1971130_52	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1971130_52	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1971130_52	UniRef90	UniRef90_A0A1I1NPN1	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1971130_52	eggNOG-mapper	1211817.CCAT010000007_gene1063	sequence-specific DNA binding	NA
UHGV-1971130_52	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1971130_52	COG	COG1426	NA	NA
UHGV-1971130_53	PHROG	phrog_87	metallo-protease	other
UHGV-1971130_53	UniRef90	UniRef90_UPI00189DC221	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-1971130_53	eggNOG-mapper	857293.CAAU_0764	Zn peptidase	NA
UHGV-1971130_53	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1971130_53	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1971130_53	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1971130_54	KOfam	K14059	int; integrase	NA
UHGV-1971130_54	PHROG	phrog_1	integrase	integration and excision
UHGV-1971130_54	UniRef90	UniRef90_UPI000C06F202	site-specific integrase	NA
UHGV-1971130_54	eggNOG-mapper	86416.Clopa_4319	Belongs to the 'phage' integrase family	NA
UHGV-1971130_54	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-1971130_54	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1971130_54	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1971130_54	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1971130_54	Structural annotation	PF00589, PF02920, MF_01808, TIGR02224, COG4974, COG3422	NA	NA