UHGV-1971955

Genome information

Genome length 24,511 bps

CDS count 43

Completeness 64.63% (medium-quality)

geNomad score 0.9478

Prediction confidence Confident

Genome information
Genome ID	UHGV-1971955
vOTU ID	vOTU-024950
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300014565\|Ga0169881_100959
BioSample	SAMEA2580293
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.63% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9478
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.23
Jumbo phage	No

Genome content
Genome length	24,511 bps
GC content	37.70%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	90.44%
Average CDS length	518.51 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1971955_1	PHROG	phrog_2335	tail length tape measure protein	tail
UHGV-1971955_1	UniRef90	UniRef90_A0A292SNJ5	TMP_3 domain-containing protein	NA
UHGV-1971955_1	eggNOG-mapper	437329.A5A3Q5_9CAUD	peptidoglycan catabolic process	NA
UHGV-1971955_1	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1971955_1	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1971955_3	PHROG	phrog_280	virion structural protein	head and packaging
UHGV-1971955_4	PHROG	phrog_205	virion structural protein	head and packaging
UHGV-1971955_7	PHROG	phrog_222	tail protein	tail
UHGV-1971955_8	PHROG	phrog_477	head-tail adaptor Ad1	connector
UHGV-1971955_8	UniRef90	UniRef90_K7XYM6	Putative head-tail connector protein	NA
UHGV-1971955_8	eggNOG-mapper	86416.Clopa_2547	NA	NA
UHGV-1971955_8	Pfam	PF20557	Putative DnaT-like ssDNA binding protein	DnaT_2
UHGV-1971955_8	Structural annotation	PF20557	NA	NA
UHGV-1971955_9	PHROG	phrog_10	major head protein	head and packaging
UHGV-1971955_9	UniRef90	UniRef90_A0A292SNU5	Phage major capsid protein	NA
UHGV-1971955_9	eggNOG-mapper	1321782.HMPREF1986_02268	Phage capsid family	NA
UHGV-1971955_9	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1971955_9	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1971955_9	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1971955_9	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1971955_11	PHROG	phrog_4611	minor head protein	head and packaging
UHGV-1971955_11	UniRef90	UniRef90_A0A0C7NL75	Bacteriophage A118, Gp4, minor capsid	NA
UHGV-1971955_11	eggNOG-mapper	645512.GCWU000246_00008	Phage minor capsid protein 2	NA
UHGV-1971955_11	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1971955_12	PHROG	phrog_533	portal protein	head and packaging
UHGV-1971955_12	UniRef90	UniRef90_R6QEB6	Prophage LambdaCh01 portal protein	NA
UHGV-1971955_12	eggNOG-mapper	632518.Calow_0828	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1971955_12	Structural annotation	PF05133, MF_04120, TIGR01542, COG4695	NA	NA
UHGV-1971955_13	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1971955_13	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-1971955_13	UniRef90	UniRef90_A0A292SRG5	PBSX family phage terminase large subunit	NA
UHGV-1971955_13	eggNOG-mapper	999411.HMPREF1092_00914	phage terminase, large subunit, PBSX family	NA
UHGV-1971955_13	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1971955_13	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1971955_13	COG	COG1783	Phage terminase large subunit	NA
UHGV-1971955_13	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1971955_14	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-1971955_14	UniRef90	UniRef90_A0A843HSC6	DNA-packaging protein	NA
UHGV-1971955_14	eggNOG-mapper	999411.HMPREF1092_03330	DNA-packaging protein gp3	NA
UHGV-1971955_14	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-1971955_15	UniRef90	UniRef90_A0A2Z5X2Q6	Site-specific recombinase, resolvase family protein	NA
UHGV-1971955_15	eggNOG-mapper	521045.Kole_1963	NA	NA
UHGV-1971955_15	Pfam	PF18863	AbiJ N-terminal domain 4	AbiJ_NTD4
UHGV-1971955_15	Structural annotation	PF18863, PF05168, COG1895	NA	NA
UHGV-1971955_18	KOfam	K07691	comA; two-component system, NarL family, competent response regulator ComA	NA
UHGV-1971955_18	UniRef90	UniRef90_R6PDW5	LuxR family response regulator	NA
UHGV-1971955_18	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-1971955_18	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-1971955_28	KOfam	K11624	ydfI; two-component system, NarL family, response regulator YdfI	NA
UHGV-1971955_28	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-1971955_28	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-1971955_29	Structural annotation	PF07374	NA	NA
UHGV-1971955_30	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1971955_30	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1971955_30	UniRef90	UniRef90_A0A843HIU7	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1971955_30	eggNOG-mapper	796940.HMPREF9628_00163	Endodeoxyribonuclease RusA	NA
UHGV-1971955_30	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1971955_30	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1971955_31	eggNOG-mapper	1209989.TepiRe1_1834	Response regulator receiver	NA
UHGV-1971955_31	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-1971955_31	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-1971955_32	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1971955_32	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1971955_32	UniRef90	UniRef90_A0A843HM17	ATP-binding protein	NA
UHGV-1971955_32	eggNOG-mapper	572479.Hprae_2086	IstB-like ATP binding protein	NA
UHGV-1971955_32	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-1971955_32	COG	COG1484	DNA replication protein DnaC	NA
UHGV-1971955_32	Structural annotation	PF01695, PF06827, MF_00377, NF005992, COG1484	NA	NA
UHGV-1971955_33	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1971955_33	eggNOG-mapper	293826.Amet_0842	DnaD domain protein	NA
UHGV-1971955_33	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1971955_33	Structural annotation	PF10771, MF_01177, TIGR01610, COG0640	NA	NA
UHGV-1971955_34	PHROG	phrog_10048	NA	unknown function
UHGV-1971955_34	UniRef90	UniRef90_A0A379C7X1	Exodeoxyribonuclease X	NA
UHGV-1971955_34	eggNOG-mapper	431943.CKL_3297	NA	NA
UHGV-1971955_35	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1971955_35	UniRef90	UniRef90_A0A843HVZ5	YqaJ viral recombinase family protein	NA
UHGV-1971955_35	eggNOG-mapper	1307436.PBF_04250	YqaJ-like viral recombinase domain	NA
UHGV-1971955_35	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1971955_35	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-1971955_35	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1971955_35	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-1971955_40	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1971955_40	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1971955_40	UniRef90	UniRef90_R6PBN1	Helix-turn-helix domain protein	NA
UHGV-1971955_40	eggNOG-mapper	1229205.BUPH_04965	Helix-turn-helix domain	NA
UHGV-1971955_40	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-1971955_40	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1971955_40	Structural annotation	PF12844, PF13744, MF_00535, NF041951, NF007257, COG1476, COG5499	NA	NA
UHGV-1971955_43	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1971955_43	PHROG	phrog_95	integrase	integration and excision
UHGV-1971955_43	UniRef90	UniRef90_A0A3D2FYT1	Recombinase family protein (Fragment)	NA
UHGV-1971955_43	eggNOG-mapper	1235835.C814_00825	Resolvase, N terminal domain	NA
UHGV-1971955_43	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1971955_43	Pfam	PF07508	Recombinase	Recombinase
UHGV-1971955_43	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1971955_43	Structural annotation	PF00239, PF07508, MF_00178, NF041201, COG1961	NA	NA