UHGV-1971992

Genome information

Genome length 32,934 bps

CDS count 42

Completeness 85.20% (medium-quality)

geNomad score 0.9794

Prediction confidence Confident

Genome information
Genome ID	UHGV-1971992
vOTU ID	vOTU-041253
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300014804\|Ga0134371_1000543
BioSample	SAMN03922478
Country	Germany
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.20% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9794
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.75
Jumbo phage	No

Genome content
Genome length	32,934 bps
GC content	48.99%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	89.14%
Average CDS length	700.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1971992_1	PHROG	phrog_5059	NA	unknown function
UHGV-1971992_1	UniRef90	UniRef90_UPI0005EB2646	NA	NA
UHGV-1971992_1	eggNOG-mapper	632292.Calhy_0845	NA	NA
UHGV-1971992_1	Pfam	PF08861	NA	DUF1828
UHGV-1971992_1	Pfam	PF08862	NA	DUF1829
UHGV-1971992_1	Structural annotation	PF08862, PF08861, MF_00722, COG3372	NA	NA
UHGV-1971992_2	PHROG	phrog_2649	endolysin	lysis
UHGV-1971992_2	UniRef90	UniRef90_A0A358M2Y7	PG_binding_1 domain-containing protein	NA
UHGV-1971992_2	eggNOG-mapper	525254.HMPREF0072_1273	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-1971992_2	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-1971992_2	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1971992_2	Structural annotation	PF11910, MF_01354, NF033742	NA	NA
UHGV-1971992_3	PHROG	phrog_1129	holin	lysis
UHGV-1971992_3	UniRef90	UniRef90_UPI001C124A7D	phage holin family protein	NA
UHGV-1971992_3	eggNOG-mapper	537013.CLOSTMETH_01754	Phage holin family Hol44, in holin superfamily V	NA
UHGV-1971992_3	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1971992_3	Structural annotation	PF16079	NA	NA
UHGV-1971992_4	PHROG	phrog_937	hemolysin	other
UHGV-1971992_4	eggNOG-mapper	1235800.C819_01426	NA	NA
UHGV-1971992_6	PHROG	phrog_6616	tail protein	tail
UHGV-1971992_6	UniRef90	UniRef90_A0A412RR71	Tail fiber domain-containing protein	NA
UHGV-1971992_6	eggNOG-mapper	445971.ANASTE_00088	NA	NA
UHGV-1971992_6	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-1971992_6	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-1971992_7	PHROG	phrog_1194	NA	unknown function
UHGV-1971992_7	eggNOG-mapper	1121866.AUGK01000003_gene1438	NA	NA
UHGV-1971992_7	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1971992_8	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1971992_8	eggNOG-mapper	246194.CHY_1662	lysine exporter protein (LysE YggA)	NA
UHGV-1971992_8	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-1971992_8	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-1971992_10	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-1971992_10	UniRef90	UniRef90_A0A7X8ZQI2	Lipoprotein_Ltp domain-containing protein	NA
UHGV-1971992_10	eggNOG-mapper	1507.HMPREF0262_00674	Host cell surface-exposed lipoprotein	NA
UHGV-1971992_10	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-1971992_11	PHROG	phrog_2066	NA	unknown function
UHGV-1971992_12	PHROG	phrog_2115	tail protein	tail
UHGV-1971992_12	eggNOG-mapper	1123230.ARQJ01000027_gene1345	NA	NA
UHGV-1971992_13	PHROG	phrog_158	major tail protein	tail
UHGV-1971992_13	UniRef90	UniRef90_UPI001359F4A3	phage tail tube protein	NA
UHGV-1971992_13	eggNOG-mapper	650150.ERH_0618	Phage tail tube protein	NA
UHGV-1971992_13	Pfam	PF16461	Lambda phage tail tube protein, TTP	Phage_TTP_12
UHGV-1971992_13	Structural annotation	PF16461, TIGR02241, COG5437	NA	NA
UHGV-1971992_14	PHROG	phrog_78	tail terminator	connector
UHGV-1971992_14	eggNOG-mapper	1209989.TepiRe1_1156	NA	NA
UHGV-1971992_14	Structural annotation	PF05657	NA	NA
UHGV-1971992_15	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1971992_15	UniRef90	UniRef90_A0A1M6MXQ2	Phage protein, HK97 gp10 family	NA
UHGV-1971992_15	eggNOG-mapper	1499683.CCFF01000014_gene3905	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1971992_15	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1971992_15	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1971992_15	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1971992_16	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1971992_18	PHROG	phrog_283	major head protein	head and packaging
UHGV-1971992_18	UniRef90	UniRef90_A0A316RCU2	P22 coat protein	NA
UHGV-1971992_18	eggNOG-mapper	1297617.JPJD01000059_gene2633	P22 coat protein - gene protein 5	NA
UHGV-1971992_18	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-1971992_18	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1971992_19	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1971992_19	UniRef90	UniRef90_UPI0018A8F1CB	phage scaffolding protein	NA
UHGV-1971992_19	eggNOG-mapper	169963.lmo2297	Phage minor structural protein GP20	NA
UHGV-1971992_19	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1971992_22	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-1971992_22	UniRef90	UniRef90_UPI001C11FEDD	minor capsid protein	NA
UHGV-1971992_22	eggNOG-mapper	742733.HMPREF9469_01825	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-1971992_22	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1971992_22	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1971992_22	COG	COG2369	NA	NA
UHGV-1971992_22	Structural annotation	PF04233, TIGR01641, COG2357	NA	NA
UHGV-1971992_23	PHROG	phrog_64	portal protein	head and packaging
UHGV-1971992_23	UniRef90	UniRef90_A0A3D4VRW3	Phage portal protein	NA
UHGV-1971992_23	eggNOG-mapper	97138.C820_00238	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1971992_23	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1971992_23	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1971992_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1971992_24	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1971992_24	UniRef90	UniRef90_A0A2N0ULW5	Phage terminase, large subunit, PBSX family	NA
UHGV-1971992_24	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-1971992_24	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1971992_24	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1971992_24	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1971992_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-1971992_24	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1971992_25	PHROG	phrog_1171	tail spike protein	tail
UHGV-1971992_25	eggNOG-mapper	411464.DESPIG_00760	tail collar domain protein	NA
UHGV-1971992_25	COG	COG4675	Phage tail collar domain	NA
UHGV-1971992_26	Structural annotation	PF07703, NF038114, COG5501	NA	NA
UHGV-1971992_27	UniRef90	UniRef90_UPI000680D86D	PF13754 domain-containing protein	NA
UHGV-1971992_27	Pfam	PF13754	NA	Big_3_4
UHGV-1971992_27	Structural annotation	PF13754	NA	NA
UHGV-1971992_28	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-1971992_28	PHROG	phrog_11157	NA	unknown function
UHGV-1971992_28	UniRef90	UniRef90_A0A174LMA6	Bacillopeptidase F	NA
UHGV-1971992_28	eggNOG-mapper	476272.RUMHYD_02867	NA	NA
UHGV-1971992_28	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-1971992_28	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-1971992_28	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-1971992_28	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-1971992_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1971992_30	PHROG	phrog_757	DNA methyltransferase	other
UHGV-1971992_30	UniRef90	UniRef90_A0A3R6ATD0	DNA cytosine methyltransferase	NA
UHGV-1971992_30	eggNOG-mapper	742733.HMPREF9469_01835	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-1971992_30	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1971992_30	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-1971992_31	KOfam	K21919	KCTD9; BTB/POZ domain-containing protein KCTD9	NA
UHGV-1971992_31	PHROG	phrog_923	NA	unknown function
UHGV-1971992_31	eggNOG-mapper	768710.DesyoDRAFT_5248	Pentapeptide repeats (8 copies)	NA
UHGV-1971992_31	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-1971992_31	COG	COG1357	NA	NA
UHGV-1971992_31	Structural annotation	PF13599, NF011744, COG1357	NA	NA
UHGV-1971992_32	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1971992_32	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1971992_32	UniRef90	UniRef90_A0A0L0WED4	Holliday junction resolvase	NA
UHGV-1971992_32	eggNOG-mapper	411459.RUMOBE_01038	COG COG4570 Holliday junction resolvase	NA
UHGV-1971992_32	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1971992_32	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1971992_32	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1971992_33	PHROG	phrog_1408	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1971992_33	UniRef90	UniRef90_S1N930	Phage replication initiation protein	NA
UHGV-1971992_33	eggNOG-mapper	632292.Calhy_0413	NA	NA
UHGV-1971992_33	Structural annotation	PF01475, MF_01819, NF006999, COG0735	NA	NA
UHGV-1971992_35	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1971992_35	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1971992_35	UniRef90	UniRef90_A0A3D3Y007	Recombinase RecT	NA
UHGV-1971992_35	eggNOG-mapper	1226322.HMPREF1545_00015	RecT family	NA
UHGV-1971992_35	Pfam	PF03837	RecT family	RecT
UHGV-1971992_35	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1971992_35	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1971992_35	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-1971992_36	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1971992_36	UniRef90	UniRef90_UPI001D078B74	YqaJ viral recombinase family protein	NA
UHGV-1971992_36	eggNOG-mapper	428125.CLOLEP_01823	YqaJ viral recombinase family	NA
UHGV-1971992_36	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1971992_36	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-1971992_36	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1971992_36	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-1971992_39	PHROG	phrog_14105	NA	unknown function
UHGV-1971992_39	UniRef90	UniRef90_D4JQH0	Pentapeptide repeats (8 copies)	NA
UHGV-1971992_39	eggNOG-mapper	97138.C820_00368	PPE family	NA
UHGV-1971992_39	Pfam	PF01469	Pentapeptide repeats (8 copies)	Pentapeptide_2
UHGV-1971992_39	COG	COG5651	PPE-repeat protein	NA
UHGV-1971992_41	UniRef90	UniRef90_R6ERV1	Putative transcriptional regulator with C-terminal CBS domains	NA
UHGV-1971992_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1971992_41	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA