UHGV-1972058

Genome information

Genome length 34,317 bps

CDS count 58

Completeness 83.61% (medium-quality)

geNomad score 0.9779

Prediction confidence Confident

Genome information
Genome ID	UHGV-1972058
vOTU ID	vOTU-018791
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300014936\|Ga0169833_100036\|provirus_14160_51009
BioSample	SAMEA2580245
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.61% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9779
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.5
Jumbo phage	No

Genome content
Genome length	34,317 bps
GC content	44.83%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	91.37%
Average CDS length	547.35 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1972058_1	UniRef90	UniRef90_A0A7X8VAU8	Phage tail assembly protein	NA
UHGV-1972058_1	eggNOG-mapper	411902.CLOBOL_06816	NA	NA
UHGV-1972058_3	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-1972058_3	UniRef90	UniRef90_A0A3E2U545	XRE family transcriptional regulator	NA
UHGV-1972058_3	eggNOG-mapper	411461.DORFOR_01128	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1972058_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1972058_4	eggNOG-mapper	411902.CLOBOL_05639	NA	NA
UHGV-1972058_6	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1972058_6	PHROG	phrog_9611	endolysin	lysis
UHGV-1972058_6	UniRef90	UniRef90_R5FAN7	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-1972058_6	eggNOG-mapper	742733.HMPREF9469_01796	Ami_2	NA
UHGV-1972058_6	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1972058_6	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-1972058_6	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1972058_6	Structural annotation	PF01510, PF19127, MF_04111, NF008758, TIGR04035, COG5632	NA	NA
UHGV-1972058_7	PHROG	phrog_1129	holin	lysis
UHGV-1972058_7	UniRef90	UniRef90_A0A3E2U4V5	Holin	NA
UHGV-1972058_7	eggNOG-mapper	1256908.HMPREF0373_00463	Phage holin family Hol44, in holin superfamily V	NA
UHGV-1972058_7	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1972058_7	Structural annotation	PF06946	NA	NA
UHGV-1972058_8	eggNOG-mapper	610130.Closa_0762	NA	NA
UHGV-1972058_9	UniRef90	UniRef90_A0A3E2U4U3	XkdX family protein	NA
UHGV-1972058_9	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-1972058_9	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-1972058_10	eggNOG-mapper	742733.HMPREF9469_01800	NA	NA
UHGV-1972058_11	PHROG	phrog_17196	kinase	other
UHGV-1972058_11	eggNOG-mapper	742733.HMPREF9469_01805	NA	NA
UHGV-1972058_11	Structural annotation	PF13619, COG3536	NA	NA
UHGV-1972058_13	PHROG	phrog_18190	NA	unknown function
UHGV-1972058_13	UniRef90	UniRef90_A0A2T3F3C9	Peptidase S74 domain-containing protein	NA
UHGV-1972058_13	eggNOG-mapper	742733.HMPREF9469_01807	NA	NA
UHGV-1972058_13	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-1972058_14	PHROG	phrog_18190	NA	unknown function
UHGV-1972058_14	UniRef90	UniRef90_N9YY23	Peptidase S74 domain-containing protein	NA
UHGV-1972058_14	eggNOG-mapper	742733.HMPREF9469_01807	NA	NA
UHGV-1972058_15	PHROG	phrog_1194	NA	unknown function
UHGV-1972058_15	eggNOG-mapper	742733.HMPREF9469_01808	NA	NA
UHGV-1972058_15	Pfam	PF20458	NA	DUF6711
UHGV-1972058_15	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-1972058_16	PHROG	phrog_9418	NA	unknown function
UHGV-1972058_16	UniRef90	UniRef90_N9XK57	zinc_ribbon_2 domain-containing protein	NA
UHGV-1972058_16	eggNOG-mapper	1235798.C817_02111	NA	NA
UHGV-1972058_16	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-1972058_17	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1972058_17	UniRef90	UniRef90_A0A174GX48	Phage-like protein	NA
UHGV-1972058_17	eggNOG-mapper	742733.HMPREF9469_01814	tape measure	NA
UHGV-1972058_17	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1972058_17	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-1972058_18	PHROG	phrog_2066	NA	unknown function
UHGV-1972058_19	PHROG	phrog_183	tail chaperone protein	tail
UHGV-1972058_19	UniRef90	UniRef90_UPI0008324CF8	NA	NA
UHGV-1972058_19	eggNOG-mapper	742733.HMPREF9469_01816	NA	NA
UHGV-1972058_19	Pfam	PF19591	NA	DUF6096
UHGV-1972058_19	Structural annotation	PF19591	NA	NA
UHGV-1972058_20	PHROG	phrog_158	major tail protein	tail
UHGV-1972058_20	UniRef90	UniRef90_A0A395YJ71	Phage tail protein	NA
UHGV-1972058_20	eggNOG-mapper	742733.HMPREF9469_01817	Phage tail tube protein, TTP	NA
UHGV-1972058_20	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-1972058_20	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-1972058_21	PHROG	phrog_78	tail terminator	connector
UHGV-1972058_21	eggNOG-mapper	742733.HMPREF9469_01818	NA	NA
UHGV-1972058_21	Structural annotation	PF05657	NA	NA
UHGV-1972058_22	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1972058_22	UniRef90	UniRef90_G5HGQ0	HK97 gp10 family phage protein	NA
UHGV-1972058_22	eggNOG-mapper	742733.HMPREF9469_01819	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1972058_22	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1972058_22	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1972058_22	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1972058_23	PHROG	phrog_2168	NA	unknown function
UHGV-1972058_23	eggNOG-mapper	742733.HMPREF9469_01820	NA	NA
UHGV-1972058_23	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1972058_24	PHROG	phrog_132	head-tail adaptor	connector
UHGV-1972058_24	UniRef90	UniRef90_A0A173WLV7	Phage gp6-like head-tail connector protein	NA
UHGV-1972058_24	eggNOG-mapper	742733.HMPREF9469_01821	Phage gp6-like head-tail connector protein	NA
UHGV-1972058_24	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1972058_24	Structural annotation	PF05135	NA	NA
UHGV-1972058_25	PHROG	phrog_2724	NA	unknown function
UHGV-1972058_25	UniRef90	UniRef90_A0A414AP48	Transcription termination factor Rho	NA
UHGV-1972058_25	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-1972058_25	Structural annotation	PF07498	NA	NA
UHGV-1972058_26	PHROG	phrog_422	major head protein	head and packaging
UHGV-1972058_26	UniRef90	UniRef90_A0A2H4JCM6	Putative capsid protein	NA
UHGV-1972058_26	eggNOG-mapper	742733.HMPREF9469_01823	NA	NA
UHGV-1972058_26	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-1972058_27	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-1972058_27	UniRef90	UniRef90_A0A414AP34	NA	NA
UHGV-1972058_27	eggNOG-mapper	742733.HMPREF9469_01824	NA	NA
UHGV-1972058_27	Pfam	PF14265	NA	DUF4355
UHGV-1972058_27	Structural annotation	PF14265	NA	NA
UHGV-1972058_28	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-1972058_28	UniRef90	UniRef90_G5HGQ6	Phage_Mu_F domain-containing protein	NA
UHGV-1972058_28	eggNOG-mapper	742733.HMPREF9469_01825	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-1972058_28	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1972058_28	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1972058_28	COG	COG2369	NA	NA
UHGV-1972058_28	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1972058_29	PHROG	phrog_64	portal protein	head and packaging
UHGV-1972058_29	UniRef90	UniRef90_G5HGQ7	SPP1 family phage portal protein	NA
UHGV-1972058_29	eggNOG-mapper	742733.HMPREF9469_01826	Phage portal protein, SPP1 family	NA
UHGV-1972058_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1972058_29	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-1972058_29	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1972058_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1972058_30	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1972058_30	UniRef90	UniRef90_G5HGQ8	Phage terminase large subunit	NA
UHGV-1972058_30	eggNOG-mapper	742733.HMPREF9469_01827	Terminase RNAseH like domain	NA
UHGV-1972058_30	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1972058_30	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1972058_30	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1972058_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-1972058_30	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1972058_31	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-1972058_31	UniRef90	UniRef90_A0A174GY31	Phage-like protein	NA
UHGV-1972058_31	eggNOG-mapper	742733.HMPREF9469_01828	transposase activity	NA
UHGV-1972058_31	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-1972058_31	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-1972058_31	Structural annotation	PF07141	NA	NA
UHGV-1972058_33	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1972058_33	PHROG	phrog_3502	NA	unknown function
UHGV-1972058_33	UniRef90	UniRef90_N9XKF7	LexA_DNA_bind domain-containing protein	NA
UHGV-1972058_33	eggNOG-mapper	742733.HMPREF9469_01830	LexA DNA binding domain	NA
UHGV-1972058_33	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-1972058_33	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1972058_34	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1972058_34	UniRef90	UniRef90_UPI001D089637	NA	NA
UHGV-1972058_34	eggNOG-mapper	742733.HMPREF9469_01831	NA	NA
UHGV-1972058_34	Structural annotation	PF04545, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-1972058_36	PHROG	phrog_4572	NA	unknown function
UHGV-1972058_36	eggNOG-mapper	411902.CLOBOL_05688	NA	NA
UHGV-1972058_37	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-1972058_37	UniRef90	UniRef90_A0A1E3UAI9	MazG domain-containing protein	NA
UHGV-1972058_37	eggNOG-mapper	658655.HMPREF0988_00885	NA	NA
UHGV-1972058_37	Structural annotation	PF10400, MF_01019, NF010671, COG0140	NA	NA
UHGV-1972058_40	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1972058_40	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1972058_40	UniRef90	UniRef90_N9XN33	IstB_IS21 domain-containing protein	NA
UHGV-1972058_40	eggNOG-mapper	742733.HMPREF9469_01844	IstB-like ATP binding protein	NA
UHGV-1972058_40	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-1972058_40	COG	COG1484	DNA replication protein DnaC	NA
UHGV-1972058_41	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1972058_41	UniRef90	UniRef90_A0A174WT25	Replication initiator A domain-containing protein	NA
UHGV-1972058_41	eggNOG-mapper	742733.HMPREF9469_01845	NA	NA
UHGV-1972058_41	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-1972058_42	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1972058_42	eggNOG-mapper	742740.HMPREF9474_03491	NA	NA
UHGV-1972058_42	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-1972058_43	PHROG	phrog_2113	NA	unknown function
UHGV-1972058_43	eggNOG-mapper	1160721.RBI_II00485	NA	NA
UHGV-1972058_43	Structural annotation	PF21715, TIGR04176, COG1654	NA	NA
UHGV-1972058_44	eggNOG-mapper	1304866.K413DRAFT_4636	NA	NA
UHGV-1972058_44	Structural annotation	PF17457	NA	NA
UHGV-1972058_45	PHROG	phrog_7566	NA	unknown function
UHGV-1972058_45	UniRef90	UniRef90_A0A414AP32	Phosphoenolpyruvate carboxykinase	NA
UHGV-1972058_45	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-1972058_46	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1972058_46	eggNOG-mapper	411490.ANACAC_00804	NA	NA
UHGV-1972058_47	PHROG	phrog_14970	NA	unknown function
UHGV-1972058_47	eggNOG-mapper	411468.CLOSCI_00315	double-strand break repair protein	NA
UHGV-1972058_47	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-1972058_47	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-1972058_48	KOfam	K03698	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	NA
UHGV-1972058_48	PHROG	phrog_5889	NA	unknown function
UHGV-1972058_48	UniRef90	UniRef90_R0CVH9	HDc domain-containing protein	NA
UHGV-1972058_48	eggNOG-mapper	411468.CLOSCI_00316	Metal dependent phosphohydrolases with conserved 'HD' motif.	NA
UHGV-1972058_48	Pfam	PF01966	HD domain	HD
UHGV-1972058_48	NCBIFam	TIGR00277.1	HDIG domain-containing protein	NA
UHGV-1972058_48	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-1972058_48	Structural annotation	PF07514, MF_01427, NF010007, COG3481	NA	NA
UHGV-1972058_54	UniRef90	UniRef90_A0A3D1LDL3	DNA-binding protein	NA
UHGV-1972058_54	eggNOG-mapper	1235797.C816_00778	TIGRFAM DNA binding domain, excisionase family	NA
UHGV-1972058_54	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-1972058_55	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1972058_55	UniRef90	UniRef90_A0A414AP10	XRE family transcriptional regulator	NA
UHGV-1972058_55	eggNOG-mapper	1304866.K413DRAFT_0833	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1972058_55	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1972058_55	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1972058_56	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1972058_56	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1972058_56	UniRef90	UniRef90_A0A414AP97	XRE family transcriptional regulator	NA
UHGV-1972058_56	eggNOG-mapper	411459.RUMOBE_00961	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-1972058_56	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1972058_56	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-1972058_56	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-1972058_57	PHROG	phrog_87	metallo-protease	other
UHGV-1972058_57	UniRef90	UniRef90_A0A3E2U6I8	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-1972058_57	eggNOG-mapper	318464.IO99_00420	IrrE N-terminal-like domain	NA
UHGV-1972058_57	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1972058_57	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1972058_57	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1972058_58	KOfam	K14059	int; integrase	NA
UHGV-1972058_58	PHROG	phrog_1	integrase	integration and excision
UHGV-1972058_58	UniRef90	UniRef90_A0A174NPS2	Site-specific recombinase XerD	NA
UHGV-1972058_58	eggNOG-mapper	397288.C806_02995	Phage integrase family	NA
UHGV-1972058_58	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1972058_58	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1972058_58	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1972058_58	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA