UHGV-1972340

Genome information

Genome length 23,288 bps

CDS count 40

Completeness 57.14% (medium-quality)

geNomad score 0.9767

Prediction confidence Confident

Genome information
Genome ID	UHGV-1972340
vOTU ID	vOTU-036754
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300023493\|Ga0257031_101135
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.14% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9767
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.2
Jumbo phage	No

Genome content
Genome length	23,288 bps
GC content	28.84%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	92.06%
Average CDS length	537.90 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1972340_1	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1972340_1	eggNOG-mapper	1499683.CCFF01000017_gene2158	Phage minor structural protein	NA
UHGV-1972340_1	COG	COG4926	Phage-related protein	NA
UHGV-1972340_2	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1972340_2	UniRef90	UniRef90_A0A1C5VG03	Phage-related protein	NA
UHGV-1972340_2	eggNOG-mapper	573061.Clocel_3532	tail component	NA
UHGV-1972340_2	COG	COG4722	Phage-related protein YomH	NA
UHGV-1972340_2	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1972340_4	PHROG	phrog_559	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1972340_4	UniRef90	UniRef90_UPI0003F525D5	NA	NA
UHGV-1972340_4	eggNOG-mapper	1129192.A0A0E3D988_9CAUD	regulation of transcription, DNA-dependent	NA
UHGV-1972340_4	Structural annotation	PF04480, PF05265, PF14311, TIGR00632, COG3727	NA	NA
UHGV-1972340_5	KOfam	K06240	LAMA3_5; laminin, alpha 3/5	NA
UHGV-1972340_5	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-1972340_5	UniRef90	UniRef90_UPI0011074901	phage tail tape measure protein	NA
UHGV-1972340_5	eggNOG-mapper	1536774.H70357_10670	minor tail protein	NA
UHGV-1972340_5	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1972340_5	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1972340_5	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1972340_6	eggNOG-mapper	1121866.AUGK01000006_gene886	NA	NA
UHGV-1972340_7	UniRef90	UniRef90_A0A316S919	Phage tail protein	NA
UHGV-1972340_7	eggNOG-mapper	1384484.AEQU_1175	NA	NA
UHGV-1972340_7	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-1972340_8	PHROG	phrog_5509	neck protein	connector
UHGV-1972340_8	eggNOG-mapper	1123315.AUIP01000014_gene1956	NA	NA
UHGV-1972340_8	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-1972340_9	Structural annotation	PF05657, COG3167	NA	NA
UHGV-1972340_10	PHROG	phrog_5635	head-tail adaptor	connector
UHGV-1972340_10	UniRef90	UniRef90_UPI0011070497	phage head closure protein	NA
UHGV-1972340_10	eggNOG-mapper	1220589.CD32_01710	NA	NA
UHGV-1972340_10	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1972340_11	PHROG	phrog_749	NA	unknown function
UHGV-1972340_11	UniRef90	UniRef90_A0A1I3QJG6	Phage gp6-like head-tail connector protein	NA
UHGV-1972340_11	eggNOG-mapper	1121866.AUGK01000006_gene881	NA	NA
UHGV-1972340_12	PHROG	phrog_10	major head protein	head and packaging
UHGV-1972340_12	UniRef90	UniRef90_UPI001107332E	phage major capsid protein	NA
UHGV-1972340_12	eggNOG-mapper	349161.Dred_2604	Phage capsid family	NA
UHGV-1972340_12	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1972340_12	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1972340_12	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1972340_12	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1972340_13	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1972340_13	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1972340_13	UniRef90	UniRef90_UPI00110724D9	Clp protease ClpP	NA
UHGV-1972340_13	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-1972340_13	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1972340_13	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1972340_13	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-1972340_14	PHROG	phrog_12	portal protein	head and packaging
UHGV-1972340_14	UniRef90	UniRef90_UPI00148519DF	phage portal protein	NA
UHGV-1972340_14	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-1972340_14	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1972340_14	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1972340_14	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1972340_14	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1972340_15	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1972340_15	UniRef90	UniRef90_A0A1I3QIL6	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1972340_15	eggNOG-mapper	1211817.CCAT010000053_gene2129	Phage Terminase	NA
UHGV-1972340_15	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1972340_15	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1972340_15	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1972340_15	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1972340_16	PHROG	phrog_314	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1972340_16	UniRef90	UniRef90_A0A075KJD6	Putative truncated GIY-YIG endonuclease	NA
UHGV-1972340_16	eggNOG-mapper	1399942.U3PCR9_9CAUD	NUMOD3 motif (2 copies)	NA
UHGV-1972340_16	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-1972340_16	Pfam	PF07460	NUMOD3 motif	NUMOD3
UHGV-1972340_16	NCBIFam	TIGR01453.1	group I intron endonuclease	NA
UHGV-1972340_16	Structural annotation	PF19835, PF07460, PF20987, TIGR01453	NA	NA
UHGV-1972340_17	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-1972340_17	UniRef90	UniRef90_UPI001D06BD2A	P27 family phage terminase small subunit	NA
UHGV-1972340_17	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-1972340_17	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1972340_17	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1972340_18	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1972340_18	UniRef90	UniRef90_A0A1I3QJN8	HNH endonuclease	NA
UHGV-1972340_18	eggNOG-mapper	1415774.U728_1257	HNH nucleases	NA
UHGV-1972340_18	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1972340_18	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1972340_21	PHROG	phrog_9079	NA	unknown function
UHGV-1972340_21	eggNOG-mapper	445973.CLOBAR_02450	NA	NA
UHGV-1972340_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1972340_22	UniRef90	UniRef90_A0A1C5YXD8	Phage transcriptional regulator, RinA family	NA
UHGV-1972340_22	eggNOG-mapper	1151292.QEW_0398	sigma factor activity	NA
UHGV-1972340_22	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1972340_22	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-1972340_28	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-1972340_28	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-1972340_28	UniRef90	UniRef90_UPI0014857828	sigma-70 family RNA polymerase sigma factor	NA
UHGV-1972340_28	eggNOG-mapper	1120746.CCNL01000010_gene1166	Sigma-70 region 2	NA
UHGV-1972340_28	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-1972340_28	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-1972340_28	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1972340_28	Structural annotation	PF04542, PF13404, MF_00959, TIGR02835, COG1191	NA	NA
UHGV-1972340_29	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-1972340_29	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-1972340_29	UniRef90	UniRef90_UPI00110606D0	sigma-70 family RNA polymerase sigma factor	NA
UHGV-1972340_29	eggNOG-mapper	515620.EUBELI_00781	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released	NA
UHGV-1972340_29	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-1972340_29	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-1972340_29	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1972340_29	Structural annotation	PF04542, PF08281, MF_00962, NF004471, COG1191	NA	NA
UHGV-1972340_31	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1972340_31	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1972340_31	UniRef90	UniRef90_UPI0011060A1D	single-stranded DNA-binding protein	NA
UHGV-1972340_31	eggNOG-mapper	445973.CLOBAR_00026	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1972340_31	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1972340_31	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1972340_31	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1972340_31	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1972340_31	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-1972340_34	PHROG	phrog_5164	NA	unknown function
UHGV-1972340_34	Structural annotation	PF06892	NA	NA
UHGV-1972340_36	Structural annotation	PF12092	NA	NA
UHGV-1972340_38	UniRef90	UniRef90_UPI001C000418	phage antirepressor KilAC domain-containing protein	NA
UHGV-1972340_38	eggNOG-mapper	1151292.QEW_0652	BRO family, N-terminal domain	NA
UHGV-1972340_38	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1972340_38	COG	COG3617	Prophage antirepressor	NA
UHGV-1972340_39	eggNOG-mapper	272563.CD630_09080	ORF6N domain	NA
UHGV-1972340_39	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-1972340_39	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-1972340_40	PHROG	phrog_1974	NA	unknown function
UHGV-1972340_40	UniRef90	UniRef90_A0A371ISD9	Nucleoid-associated protein	NA
UHGV-1972340_40	eggNOG-mapper	1301100.HG529375_gene4038	37-kD nucleoid-associated bacterial protein	NA
UHGV-1972340_40	Pfam	PF04245	37-kD nucleoid-associated bacterial protein	NA37
UHGV-1972340_40	COG	COG3081	dsDNA-binding nucleoid-associated protein YejK/NdpA	NA