UHGV-1973776

Genome information

Genome length 36,518 bps

CDS count 53

Completeness 90.54% (high-quality)

geNomad score 0.9772

Prediction confidence Confident

Genome information
Genome ID	UHGV-1973776
vOTU ID	vOTU-061819
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300014927\|Ga0169766_100102\|provirus_33_36550
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.54% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9772
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.47
Jumbo phage	No

Genome content
Genome length	36,518 bps
GC content	40.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	94.44%
Average CDS length	654.11 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1973776_1	PHROG	phrog_2232	NA	unknown function
UHGV-1973776_1	UniRef90	UniRef90_UPI000D647EAE	NA	NA
UHGV-1973776_1	eggNOG-mapper	357809.Cphy_2977	NA	NA
UHGV-1973776_1	Pfam	PF14337	Abortive infection alpha	Abi_alpha
UHGV-1973776_2	UniRef90	UniRef90_R6RP27	HTH cro/C1-type domain-containing protein	NA
UHGV-1973776_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1973776_2	Structural annotation	PF13560, MF_00535, TIGR03070, COG3655	NA	NA
UHGV-1973776_3	PHROG	phrog_30860	NA	unknown function
UHGV-1973776_5	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-1973776_5	UniRef90	UniRef90_A7B3R2	Siphovirus Gp157	NA
UHGV-1973776_5	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-1973776_5	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-1973776_5	Structural annotation	PF05565	NA	NA
UHGV-1973776_6	UniRef90	UniRef90_R6RDX0	Arginyl-tRNA synthetase	NA
UHGV-1973776_7	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1973776_7	UniRef90	UniRef90_R6SKG3	AAA domain-containing protein	NA
UHGV-1973776_7	eggNOG-mapper	1304866.K413DRAFT_0827	AAA domain	NA
UHGV-1973776_7	Pfam	PF13479	AAA domain	AAA_24
UHGV-1973776_7	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-1973776_8	PHROG	phrog_18107	NA	unknown function
UHGV-1973776_8	eggNOG-mapper	1256908.HMPREF0373_00659	NA	NA
UHGV-1973776_8	Structural annotation	PF05037	NA	NA
UHGV-1973776_9	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1973776_9	UniRef90	UniRef90_A0A0H3N242	Phage-related protein	NA
UHGV-1973776_9	eggNOG-mapper	756499.Desde_1078	NA	NA
UHGV-1973776_9	Structural annotation	PF17375	NA	NA
UHGV-1973776_10	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-1973776_10	UniRef90	UniRef90_A0A391NZM9	ERCC4 domain-containing protein	NA
UHGV-1973776_10	eggNOG-mapper	1256908.HMPREF0373_00660	NA	NA
UHGV-1973776_10	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-1973776_10	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-1973776_11	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-1973776_11	PHROG	phrog_11992	NA	unknown function
UHGV-1973776_11	UniRef90	UniRef90_A0A1Y4F273	DNA primase	NA
UHGV-1973776_11	eggNOG-mapper	476272.RUMHYD_01741	CHC2 zinc finger	NA
UHGV-1973776_11	PADLOC	drt-UG29	DRT	DRT
UHGV-1973776_11	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-1973776_11	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-1973776_11	Structural annotation	PF01807	NA	NA
UHGV-1973776_12	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-1973776_12	UniRef90	UniRef90_UPI001D0E7B86	NA	NA
UHGV-1973776_12	eggNOG-mapper	476272.RUMHYD_01742	NA	NA
UHGV-1973776_12	Pfam	PF06048	NA	DUF927
UHGV-1973776_12	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-1973776_12	COG	COG5519	NA	NA
UHGV-1973776_12	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-1973776_14	Structural annotation	PF01246, MF_00773, NF041909, COG2075	NA	NA
UHGV-1973776_15	Structural annotation	PF17399	NA	NA
UHGV-1973776_17	Structural annotation	PF13670	NA	NA
UHGV-1973776_18	PHROG	phrog_17690	NA	unknown function
UHGV-1973776_18	UniRef90	UniRef90_A0A6L5XWF4	3-dehydroquinate synthase	NA
UHGV-1973776_18	eggNOG-mapper	1235798.C817_03495	NA	NA
UHGV-1973776_19	PHROG	phrog_37410	NA	unknown function
UHGV-1973776_20	PHROG	phrog_7811	methyltransferase	other
UHGV-1973776_20	eggNOG-mapper	948565.AFFP02000036_gene1597	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	NA
UHGV-1973776_20	COG	COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	NA
UHGV-1973776_21	UniRef90	UniRef90_A0A417B0F5	C2H2-type domain-containing protein	NA
UHGV-1973776_22	PHROG	phrog_8684	NA	unknown function
UHGV-1973776_22	UniRef90	UniRef90_UPI000463D743	YopX family protein	NA
UHGV-1973776_22	eggNOG-mapper	478749.BRYFOR_07591	YopX protein	NA
UHGV-1973776_22	Pfam	PF09643	YopX protein	YopX
UHGV-1973776_22	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-1973776_22	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1973776_26	PHROG	phrog_19011	NA	unknown function
UHGV-1973776_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1973776_27	UniRef90	UniRef90_R6ZAS5	GED domain-containing protein	NA
UHGV-1973776_27	eggNOG-mapper	476272.RUMHYD_02841	NA	NA
UHGV-1973776_27	Structural annotation	PF02996	NA	NA
UHGV-1973776_28	KOfam	K01129	dgt; dGTPase [EC:3.1.5.1]	NA
UHGV-1973776_28	PHROG	phrog_21998	NA	unknown function
UHGV-1973776_28	UniRef90	UniRef90_UPI0002F169B6	dNTP triphosphohydrolase	NA
UHGV-1973776_28	eggNOG-mapper	658088.HMPREF0987_00663	HD domain	NA
UHGV-1973776_28	PADLOC	dGTPase	NA	NA
UHGV-1973776_28	Pfam	PF01966	HD domain	HD
UHGV-1973776_28	Pfam	PF13286	Phosphohydrolase-associated domain	HD_assoc
UHGV-1973776_28	NCBIFam	TIGR01353.1	dNTP triphosphohydrolase	NA
UHGV-1973776_28	COG	COG0232	dGTP triphosphohydrolase	NA
UHGV-1973776_28	Structural annotation	PF01966, MF_01212, NF041026, COG0232	NA	NA
UHGV-1973776_29	eggNOG-mapper	658088.HMPREF0987_00662	NA	NA
UHGV-1973776_29	Structural annotation	PF01326, MF_00558, NF002527, COG0026	NA	NA
UHGV-1973776_30	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1973776_30	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-1973776_30	UniRef90	UniRef90_UPI00156D7862	terminase small subunit	NA
UHGV-1973776_30	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-1973776_30	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-1973776_30	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1973776_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-1973776_30	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-1973776_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1973776_31	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1973776_31	UniRef90	UniRef90_UPI0015714730	PBSX family phage terminase large subunit	NA
UHGV-1973776_31	eggNOG-mapper	411461.DORFOR_00750	COG COG1783 Phage terminase large subunit	NA
UHGV-1973776_31	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1973776_31	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1973776_31	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1973776_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-1973776_31	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1973776_32	PHROG	phrog_533	portal protein	head and packaging
UHGV-1973776_32	UniRef90	UniRef90_UPI00156E473F	phage portal protein	NA
UHGV-1973776_32	eggNOG-mapper	411461.DORFOR_00749	COG NOG25118 non supervised orthologous group	NA
UHGV-1973776_32	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1973776_32	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1973776_33	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1973776_33	UniRef90	UniRef90_UPI0015710ACC	phage minor capsid protein	NA
UHGV-1973776_33	eggNOG-mapper	742723.HMPREF9477_00909	Phage minor capsid protein 2	NA
UHGV-1973776_33	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1973776_33	COG	COG2369	NA	NA
UHGV-1973776_33	Structural annotation	PF06152	NA	NA
UHGV-1973776_34	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-1973776_34	UniRef90	UniRef90_A0A829NQN8	Bro-N domain-containing protein	NA
UHGV-1973776_34	eggNOG-mapper	397290.C810_01420	BRO family, N-terminal domain	NA
UHGV-1973776_34	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1973776_34	COG	COG3617	Prophage antirepressor	NA
UHGV-1973776_34	Structural annotation	PF02498, NF033622, COG3617	NA	NA
UHGV-1973776_35	UniRef90	UniRef90_UPI00156ED30D	ribosomal-processing cysteine protease Prp	NA
UHGV-1973776_35	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-1973776_36	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-1973776_36	eggNOG-mapper	411461.DORFOR_00745	NA	NA
UHGV-1973776_36	AcrCatalog	cluster_74817	NA	NA
UHGV-1973776_36	Structural annotation	PF10788, MF_02110	NA	NA
UHGV-1973776_37	PHROG	phrog_10	major head protein	head and packaging
UHGV-1973776_37	UniRef90	UniRef90_UPI00156FCD97	phage major capsid protein	NA
UHGV-1973776_37	eggNOG-mapper	411461.DORFOR_00744	COG NOG20168 non supervised orthologous group	NA
UHGV-1973776_37	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1973776_37	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1973776_37	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1973776_37	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1973776_38	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1973776_38	eggNOG-mapper	1235799.C818_04224	NA	NA
UHGV-1973776_39	PHROG	phrog_3366	NA	unknown function
UHGV-1973776_39	eggNOG-mapper	742723.HMPREF9477_00903	NA	NA
UHGV-1973776_39	Pfam	PF20536	NA	DUF6751
UHGV-1973776_39	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-1973776_40	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1973776_40	UniRef90	UniRef90_UPI0015709D5A	minor capsid protein	NA
UHGV-1973776_40	eggNOG-mapper	742723.HMPREF9477_00902	Minor capsid protein	NA
UHGV-1973776_40	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1973776_40	Structural annotation	PF11114	NA	NA
UHGV-1973776_41	PHROG	phrog_3266	tail completion	connector
UHGV-1973776_41	UniRef90	UniRef90_UPI0011DD0321	chloramphenicol resistance protein	NA
UHGV-1973776_41	eggNOG-mapper	742723.HMPREF9477_00901	NA	NA
UHGV-1973776_41	Structural annotation	PF12691	NA	NA
UHGV-1973776_42	PHROG	phrog_3099	NA	unknown function
UHGV-1973776_42	eggNOG-mapper	742723.HMPREF9477_00900	NA	NA
UHGV-1973776_42	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1973776_43	PHROG	phrog_4450	NA	unknown function
UHGV-1973776_43	UniRef90	UniRef90_UPI001F469033	AP endonuclease	NA
UHGV-1973776_43	eggNOG-mapper	573061.Clocel_3535	NA	NA
UHGV-1973776_43	Pfam	PF20378	NA	DUF6673
UHGV-1973776_43	Structural annotation	PF20378	NA	NA
UHGV-1973776_44	PHROG	phrog_706	NA	unknown function
UHGV-1973776_44	UniRef90	UniRef90_UPI00156E0A8C	Gp15 family bacteriophage protein	NA
UHGV-1973776_44	eggNOG-mapper	742723.HMPREF9477_00898	Bacteriophage Gp15 protein	NA
UHGV-1973776_44	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1973776_44	Structural annotation	PF06854	NA	NA
UHGV-1973776_45	PHROG	phrog_5218	NA	unknown function
UHGV-1973776_45	UniRef90	UniRef90_UPI0015702420	phage tail tape measure protein	NA
UHGV-1973776_45	eggNOG-mapper	742723.HMPREF9477_00897	phage tail tape measure protein	NA
UHGV-1973776_45	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1973776_45	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1973776_45	COG	COG4487	NA	NA
UHGV-1973776_45	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-1973776_46	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1973776_46	eggNOG-mapper	658655.HMPREF0988_02551	NA	NA
UHGV-1973776_46	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-1973776_47	PHROG	phrog_538	minor tail protein	tail
UHGV-1973776_47	UniRef90	UniRef90_UPI001E2C8064	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-1973776_47	eggNOG-mapper	665950.HMPREF1025_02520	NA	NA
UHGV-1973776_47	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1973776_47	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-1973776_48	PHROG	phrog_13141	NA	unknown function
UHGV-1973776_48	eggNOG-mapper	742723.HMPREF9477_00894	NA	NA
UHGV-1973776_48	Structural annotation	PF20747, PF17900	NA	NA
UHGV-1973776_49	PHROG	phrog_16164	NA	unknown function
UHGV-1973776_49	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-1973776_49	Structural annotation	PF10651, NF032891	NA	NA
UHGV-1973776_50	PHROG	phrog_18593	NA	unknown function
UHGV-1973776_50	eggNOG-mapper	411460.RUMTOR_02099	NA	NA
UHGV-1973776_51	PHROG	phrog_199	holin	lysis
UHGV-1973776_51	UniRef90	UniRef90_UPI00156E32FD	phage holin family protein	NA
UHGV-1973776_51	eggNOG-mapper	411460.RUMTOR_02100	NA	NA
UHGV-1973776_51	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1973776_51	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1973776_51	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1973776_52	Structural annotation	PF13384, NF001074, COG3677	NA	NA
UHGV-1973776_53	KOfam	K07273	acm; lysozyme	NA
UHGV-1973776_53	PHROG	phrog_291	endolysin	lysis
UHGV-1973776_53	UniRef90	UniRef90_R6RHB4	Putative endolysin	NA
UHGV-1973776_53	eggNOG-mapper	553973.CLOHYLEM_07287	Glycosyl hydrolase, family 25	NA
UHGV-1973776_53	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1973776_53	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-1973776_53	Pfam	PF01476	LysM domain	LysM
UHGV-1973776_53	COG	COG1388	LysM repeat	NA
UHGV-1973776_53	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA