UHGV-1976685

Genome information

Genome length 38,617 bps

CDS count 60

Completeness 99.42% (high-quality)

geNomad score 0.9694

Prediction confidence Confident

Genome information
Genome ID	UHGV-1976685
vOTU ID	vOTU-008648
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300014936\|Ga0169833_100101\|provirus_36142_74758
BioSample	SAMEA2580245
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.42% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9694
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.73
Jumbo phage	No

Genome content
Genome length	38,617 bps
GC content	38.76%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	89.27%
Average CDS length	578.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1976685_1	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1976685_1	PHROG	phrog_1	integrase	integration and excision
UHGV-1976685_1	UniRef90	UniRef90_UPI0013041F9D	tyrosine-type recombinase/integrase	NA
UHGV-1976685_1	eggNOG-mapper	1507.HMPREF0262_00132	Belongs to the 'phage' integrase family	NA
UHGV-1976685_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1976685_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1976685_2	KOfam	K14059	int; integrase	NA
UHGV-1976685_2	PHROG	phrog_1	integrase	integration and excision
UHGV-1976685_2	UniRef90	UniRef90_UPI001BAAA331	site-specific integrase	NA
UHGV-1976685_2	eggNOG-mapper	742740.HMPREF9474_04330	Phage integrase, N-terminal SAM-like domain	NA
UHGV-1976685_2	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1976685_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1976685_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1976685_2	Structural annotation	PF00589, MF_01808, TIGR02225, NF041908, COG4974, COG3422	NA	NA
UHGV-1976685_3	UniRef90	UniRef90_A0A1C5WC68	Virulence protein	NA
UHGV-1976685_3	eggNOG-mapper	748727.CLJU_c00540	Virulence protein RhuM family	NA
UHGV-1976685_3	Pfam	PF13310	Virulence protein RhuM family	Virulence_RhuM
UHGV-1976685_3	COG	COG3943	NA	NA
UHGV-1976685_3	Structural annotation	PF13310, TIGR02681, COG3943	NA	NA
UHGV-1976685_4	PHROG	phrog_5783	NA	unknown function
UHGV-1976685_4	UniRef90	UniRef90_A0A351HU33	Nuclease	NA
UHGV-1976685_4	eggNOG-mapper	864563.HMPREF9166_1292	NYN domain	NA
UHGV-1976685_4	Pfam	PF01936	NYN domain	NYN
UHGV-1976685_4	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-1976685_4	Structural annotation	PF01936, TIGR00288, COG1432	NA	NA
UHGV-1976685_5	PHROG	phrog_17658	NA	unknown function
UHGV-1976685_5	UniRef90	UniRef90_A0A6M0SSN2	SHOCT domain-containing protein	NA
UHGV-1976685_5	eggNOG-mapper	1232447.BAHW02000015_gene1114	NA	NA
UHGV-1976685_7	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1976685_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1976685_7	UniRef90	UniRef90_A0A3R6A5Q0	Helix-turn-helix transcriptional regulator	NA
UHGV-1976685_7	eggNOG-mapper	742733.HMPREF9469_01471	sequence-specific DNA binding	NA
UHGV-1976685_7	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1976685_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1976685_7	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1976685_7	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-1976685_8	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1976685_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1976685_8	UniRef90	UniRef90_A0A3E2UD82	XRE family transcriptional regulator	NA
UHGV-1976685_8	eggNOG-mapper	706433.HMPREF9430_01294	Helix-turn-helix XRE-family like proteins	NA
UHGV-1976685_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1976685_8	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1976685_9	UniRef90	UniRef90_A0A1Q9JVV4	HTH cro/C1-type domain-containing protein	NA
UHGV-1976685_9	eggNOG-mapper	97139.C824_00056	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1976685_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1976685_9	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-1976685_11	PHROG	phrog_9188	NA	unknown function
UHGV-1976685_11	Structural annotation	PF11023	NA	NA
UHGV-1976685_12	UniRef90	UniRef90_UPI001BA7FA88	excisionase family DNA-binding protein	NA
UHGV-1976685_12	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1976685_12	Structural annotation	PF21531, TIGR01764, COG3311	NA	NA
UHGV-1976685_15	PHROG	phrog_11717	NA	unknown function
UHGV-1976685_15	eggNOG-mapper	508419.F8J181_9CAUD	NA	NA
UHGV-1976685_15	Structural annotation	PF06420, TIGR00607, COG4712	NA	NA
UHGV-1976685_16	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1976685_16	eggNOG-mapper	411490.ANACAC_00804	NA	NA
UHGV-1976685_16	Structural annotation	PF05772, NF007281	NA	NA
UHGV-1976685_17	PHROG	phrog_7566	NA	unknown function
UHGV-1976685_17	UniRef90	UniRef90_UPI0015935946	phosphoenolpyruvate carboxykinase	NA
UHGV-1976685_17	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-1976685_18	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1976685_18	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1976685_18	UniRef90	UniRef90_UPI001C1DE1E6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1976685_18	eggNOG-mapper	697281.Mahau_0558	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-1976685_18	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1976685_18	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1976685_18	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-1976685_19	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1976685_19	eggNOG-mapper	742733.HMPREF9469_01845	NA	NA
UHGV-1976685_19	Structural annotation	PF09681, PF09524, TIGR01714, COG1846	NA	NA
UHGV-1976685_20	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1976685_20	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1976685_20	UniRef90	UniRef90_A0A374AGY9	IstB_IS21 domain-containing protein	NA
UHGV-1976685_20	eggNOG-mapper	476272.RUMHYD_03359	DNA-dependent DNA replication	NA
UHGV-1976685_20	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-1976685_20	COG	COG1484	DNA replication protein DnaC	NA
UHGV-1976685_20	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-1976685_21	PHROG	phrog_1123	NA	unknown function
UHGV-1976685_21	eggNOG-mapper	1560313.A0A0D3MSU0_9CAUD	NA	NA
UHGV-1976685_21	Structural annotation	PF03551, MF_01804, TIGR03433, COG1695	NA	NA
UHGV-1976685_22	UniRef90	UniRef90_A0A374AGS2	Transposase	NA
UHGV-1976685_22	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-1976685_23	PHROG	phrog_16126	NA	unknown function
UHGV-1976685_23	eggNOG-mapper	665950.HMPREF1025_01378	NA	NA
UHGV-1976685_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1976685_24	UniRef90	UniRef90_UPI001CD68077	NA	NA
UHGV-1976685_24	eggNOG-mapper	478749.BRYFOR_07600	sigma factor activity	NA
UHGV-1976685_24	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1976685_24	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-1976685_25	PHROG	phrog_10226	NA	unknown function
UHGV-1976685_25	eggNOG-mapper	431943.CKL_3226	NA	NA
UHGV-1976685_25	Structural annotation	COG4127	NA	NA
UHGV-1976685_27	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-1976685_27	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1976685_27	UniRef90	UniRef90_UPI0002D1613D	helix-turn-helix domain-containing protein	NA
UHGV-1976685_27	eggNOG-mapper	1304866.K413DRAFT_0788	Helix-turn-helix XRE-family like proteins	NA
UHGV-1976685_27	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1976685_27	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1976685_29	PHROG	phrog_1129	holin	lysis
UHGV-1976685_29	UniRef90	UniRef90_UPI000485FFFD	phage holin family protein	NA
UHGV-1976685_29	eggNOG-mapper	1304866.K413DRAFT_0135	Phage holin family Hol44, in holin superfamily V	NA
UHGV-1976685_29	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1976685_29	Structural annotation	PF16079	NA	NA
UHGV-1976685_31	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1976685_31	PHROG	phrog_670	endolysin	lysis
UHGV-1976685_31	UniRef90	UniRef90_A0A4V1EGH7	Putative Phage-related amidase	NA
UHGV-1976685_31	eggNOG-mapper	411490.ANACAC_00703	Ami_2	NA
UHGV-1976685_31	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1976685_31	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1976685_31	Structural annotation	PF01510, PF08239, MF_04111, NF008758, COG5632	NA	NA
UHGV-1976685_32	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1976685_32	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1976685_32	UniRef90	UniRef90_UPI001D08E9BA	terminase small subunit	NA
UHGV-1976685_32	eggNOG-mapper	1120978.KB894087_gene429	Terminase small subunit	NA
UHGV-1976685_32	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1976685_32	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1976685_32	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1976685_33	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-1976685_33	UniRef90	UniRef90_UPI0005C7DF53	HNH endonuclease	NA
UHGV-1976685_33	eggNOG-mapper	293826.Amet_2409	HNH endonuclease	NA
UHGV-1976685_33	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1976685_33	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1976685_33	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-1976685_35	PHROG	phrog_5717	tail protein	tail
UHGV-1976685_35	UniRef90	UniRef90_R5HGH3	Phage minor structural protein	NA
UHGV-1976685_35	eggNOG-mapper	411490.ANACAC_00708	Phage minor structural protein	NA
UHGV-1976685_35	COG	COG4926	Phage-related protein	NA
UHGV-1976685_36	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1976685_36	UniRef90	UniRef90_R7FEF5	Terminase	NA
UHGV-1976685_36	eggNOG-mapper	1211817.CCAT010000007_gene1040	Terminase	NA
UHGV-1976685_36	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1976685_36	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1976685_36	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1976685_36	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1976685_37	PHROG	phrog_12	portal protein	head and packaging
UHGV-1976685_37	UniRef90	UniRef90_A0A3R6NU07	Phage portal protein	NA
UHGV-1976685_37	eggNOG-mapper	293826.Amet_2412	Portal protein	NA
UHGV-1976685_37	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1976685_37	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1976685_37	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1976685_38	KOfam	K06904	NA	NA
UHGV-1976685_38	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1976685_38	UniRef90	UniRef90_A0A415G8A3	HK97 family phage prohead protease	NA
UHGV-1976685_38	eggNOG-mapper	1123263.AUKY01000046_gene468	Phage prohead protease, HK97 family	NA
UHGV-1976685_38	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1976685_38	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1976685_38	COG	COG3740	Phage head maturation protease	NA
UHGV-1976685_38	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1976685_39	PHROG	phrog_10	major head protein	head and packaging
UHGV-1976685_39	UniRef90	UniRef90_A0A417W9T2	Phage major capsid protein	NA
UHGV-1976685_39	eggNOG-mapper	411470.RUMGNA_02065	NA	NA
UHGV-1976685_39	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1976685_39	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1976685_39	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1976685_39	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1976685_41	UniRef90	UniRef90_A0A843EB61	Phage head-tail connector protein	NA
UHGV-1976685_41	eggNOG-mapper	1157490.EL26_20705	NA	NA
UHGV-1976685_41	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1976685_42	PHROG	phrog_26419	tail fiber protein	tail
UHGV-1976685_42	eggNOG-mapper	1033738.CAEP01000136_gene2876	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-1976685_42	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-1976685_43	UniRef90	UniRef90_A0A6N7SSZ0	Head-tail adaptor protein	NA
UHGV-1976685_43	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1976685_44	Structural annotation	TIGR01725	NA	NA
UHGV-1976685_45	Structural annotation	PF05657	NA	NA
UHGV-1976685_46	PHROG	phrog_88	major tail protein	tail
UHGV-1976685_46	UniRef90	UniRef90_A0A843HLZ4	Ig-like domain-containing protein	NA
UHGV-1976685_46	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1976685_46	COG	COG5492	NA	NA
UHGV-1976685_46	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1976685_48	PHROG	phrog_5218	NA	unknown function
UHGV-1976685_48	UniRef90	UniRef90_UPI00156DBBA7	phage tail tape measure protein	NA
UHGV-1976685_48	eggNOG-mapper	86416.Clopa_0349	Phage-related minor tail protein	NA
UHGV-1976685_48	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1976685_48	COG	COG1340	NA	NA
UHGV-1976685_48	Structural annotation	PF10145, TIGR01760, NF006545, COG5280	NA	NA
UHGV-1976685_49	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1976685_49	UniRef90	UniRef90_A0A6N7STN1	Phage tail family protein	NA
UHGV-1976685_49	eggNOG-mapper	742740.HMPREF9474_02261	Phage tail protein	NA
UHGV-1976685_49	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1976685_49	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-1976685_50	PHROG	phrog_538	minor tail protein	tail
UHGV-1976685_50	UniRef90	UniRef90_UPI0004813F81	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-1976685_50	eggNOG-mapper	665956.HMPREF1032_00688	NA	NA
UHGV-1976685_50	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1976685_50	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1976685_51	PHROG	phrog_1220	head protein	head and packaging
UHGV-1976685_51	eggNOG-mapper	588581.Cpap_1262	COG NOG18825 non supervised orthologous group	NA
UHGV-1976685_51	Structural annotation	PF16569, PF21567	NA	NA
UHGV-1976685_52	PHROG	phrog_20920	NA	unknown function
UHGV-1976685_52	UniRef90	UniRef90_S6B1J4	Small-conductance mechanosensitive channel	NA
UHGV-1976685_52	eggNOG-mapper	293826.Amet_2614	NA	NA
UHGV-1976685_52	Structural annotation	PF16674	NA	NA
UHGV-1976685_53	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-1976685_53	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1976685_53	UniRef90	UniRef90_A7VYP4	DNA-binding helix-turn-helix protein	NA
UHGV-1976685_53	eggNOG-mapper	428125.CLOLEP_03722	DNA-binding helix-turn-helix protein	NA
UHGV-1976685_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1976685_53	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1976685_53	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1976685_54	Structural annotation	PF07878, NF010256, COG4691	NA	NA
UHGV-1976685_55	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-1976685_55	UniRef90	UniRef90_A0A7U9PFS7	Phage regulatory protein, rha family	NA
UHGV-1976685_55	eggNOG-mapper	1304866.K413DRAFT_3063	TIGRFAM phage regulatory protein, Rha family	NA
UHGV-1976685_55	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-1976685_55	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-1976685_55	COG	COG3617	Prophage antirepressor	NA
UHGV-1976685_55	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-1976685_58	UniRef90	UniRef90_A0A174QL97	Chemotaxis protein	NA
UHGV-1976685_58	eggNOG-mapper	1304866.K413DRAFT_0813	NA	NA
UHGV-1976685_58	Structural annotation	PF10723, NF008671, COG4710	NA	NA
UHGV-1976685_59	PHROG	phrog_1281	NA	unknown function
UHGV-1976685_59	UniRef90	UniRef90_UPI001C1DF2D8	NA	NA
UHGV-1976685_59	eggNOG-mapper	1235800.C819_02270	NA	NA
UHGV-1976685_59	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-1976685_59	COG	COG3600	NA	NA
UHGV-1976685_59	Structural annotation	PF13274, COG3600	NA	NA